Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq152719 107 2e-18
seq44246 104 2e-17
>seq152719
Length=2073
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
||||||| | || | || ||| | ||||| || || ||||| || ||||| |||||
Sbjct 498 TACCTCCTCTCAAGCGCAGCACAAGATGGATGGTGGATTCTTTCTGGATGTTATAATCTG 557
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
||| ||||| ||| || ||||| || || || |||| || | ||||||||| ||||
Sbjct 558 ACATGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAG 617
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| ||||||||||| || || || ||| || | || | |||||| || || |
Sbjct 618 GGATGCCCTCCTTATCCTGGATCTTAGCTTTTACATTCTCAATGGTGTCGCTGGGTTCAA 677
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||| | || | || || || ||||| || || ||||| ||||||||
Sbjct 678 CCTCCAGAGTGATAGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 726
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/208 (70%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590
|||| |||| || |||||||| || |||||||| ||| | |||||| || || |
Sbjct 63 CAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTCCA 122
Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650
|||| || || || |||| || | ||||||||| ||||| ||||||||||| || |
Sbjct 123 GCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTATCCTGGA 182
Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710
| || ||| || | || | |||||| || || ||||| | || | | || |
Sbjct 183 TCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATGGACTTAC 242
Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738
| ||||| || || ||||| ||||||||
Sbjct 243 CAGTCAGGGTCTTCACAAAGATCTGCAT 270
>seq44246
Length=4029
Score = 104 bits (114), Expect = 2e-17
Identities = 431/668 (65%), Gaps = 23/668 (3%)
Strand=Plus/Minus
Query 133284 TCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACC 133343
|||| || ||||||||||| || ||||| || || | ||||||||||| |||| |
Sbjct 1702 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGC 1643
Query 133344 AACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCCAC 133403
| || ||| || ||||||| |||| || || || || ||||||||||||
Sbjct 1642 AGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCAC 1583
Query 133404 AGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGCAAAATACCC 133463
|| | | ||| || | ||||| | | | || || | || | || |||
Sbjct 1582 AGGTCGGTGGG--------CGTC-TTCTC--CCACAT-GTCGT---ACTGGAGGATGCCC 1538
Query 133464 CTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCCAGCTCGCAG 133523
|||| || || | || ||||| || ||||| || |||||| ||||||
Sbjct 1537 TTGCTGACGGGGGAG-CCTCGTACGTGTCGTAGGGGCCCAGCTCGGCGGCCAGTTCGCAG 1479
Query 133524 CTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TGAATAGTTGACGAACCTGGC 133582
|| ||||||| ||||| |||| ||||| || ||| || || ||| | | | |||
Sbjct 1478 CTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGAT-GTTCAGCAGCTGGGC 1420
Query 133583 ATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCAAACCCTGTATGC 133641
||| ||| || ||| | | || | || | || |||||||||| ||||| | ||
Sbjct 1419 CTCGGGGCTTTCAAAGGGG-TAACGCATCAGGATGAAGGCGTCGGCCAGGCCCTGGACGC 1361
Query 133642 CGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGGATAGTGGT 133701
||| ||||| || | || || ||| | || | ||||| | || ||| ||
Sbjct 1360 CGATACCGATCGGCCTGTGGCGCTTGTTGGACTGATCGGCCTCGGGCACCGGGTAGAAGT 1301
Query 133702 TGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGTTTCAGCAAAA 133761
| | || ||||||||||| || || ||||| | ||| |||| | | |||
Sbjct 1300 TAATCTCTATGATCTTGTTCAGGTTCTTCACGATCACTTTGGTCACAGACTCCAGTTTCT 1241
Query 133762 CATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATACTGGCTAGAT 133821
||||||| ||| || ||| | |||| || |||||| || || ||| ||||
Sbjct 1240 TGAAGTCAAAAGTCC--GC-TCGGGGGTGACGTACATGTTGAGAGCGATGGAGGCCAGAT 1184
Query 133822 TACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCGCAGAGGTTGCTGC 133881
|||| || || ||| | | | | || | ||||| || | ||||||||||||||
Sbjct 1183 TACACACAGCGACCTCATCGCCACTGGAGTATTCAACGATTTCCGTGCAGAGGTTGCTGC 1124
Query 133882 ATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCCTTGTATAGCA 133941
| |||||||| |||| || | || ||||| | ||||| || ||||| ||||
Sbjct 1123 ACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCA 1064
Query 133942 TGTACGGC 133949
||||||||
Sbjct 1063 TGTACGGC 1056
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 431051909071384
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