Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq152719 107 2e-18 seq44246 104 2e-17 >seq152719 Length=2073 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | || | || ||| | ||||| || || ||||| || ||||| ||||| Sbjct 498 TACCTCCTCTCAAGCGCAGCACAAGATGGATGGTGGATTCTTTCTGGATGTTATAATCTG 557 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| ||||| ||| || ||||| || || || |||| || | ||||||||| |||| Sbjct 558 ACATGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAG 617 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||||||||| || || || ||| || | || | |||||| || || | Sbjct 618 GGATGCCCTCCTTATCCTGGATCTTAGCTTTTACATTCTCAATGGTGTCGCTGGGTTCAA 677 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | || || || ||||| || || ||||| |||||||| Sbjct 678 CCTCCAGAGTGATAGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 726 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || |||||||| || |||||||| ||| | |||||| || || | Sbjct 63 CAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTCCA 122 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || || || |||| || | ||||||||| ||||| ||||||||||| || | Sbjct 123 GCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTATCCTGGA 182 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || ||| || | || | |||||| || || ||||| | || | | || | Sbjct 183 TCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATGGACTTAC 242 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| || || ||||| |||||||| Sbjct 243 CAGTCAGGGTCTTCACAAAGATCTGCAT 270 >seq44246 Length=4029 Score = 104 bits (114), Expect = 2e-17 Identities = 431/668 (65%), Gaps = 23/668 (3%) Strand=Plus/Minus Query 133284 TCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACC 133343 |||| || ||||||||||| || ||||| || || | ||||||||||| |||| | Sbjct 1702 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGC 1643 Query 133344 AACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCCAC 133403 | || ||| || ||||||| |||| || || || || |||||||||||| Sbjct 1642 AGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCAC 1583 Query 133404 AGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGCAAAATACCC 133463 || | | ||| || | ||||| | | | || || | || | || ||| Sbjct 1582 AGGTCGGTGGG--------CGTC-TTCTC--CCACAT-GTCGT---ACTGGAGGATGCCC 1538 Query 133464 CTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCCAGCTCGCAG 133523 |||| || || | || ||||| || ||||| || |||||| |||||| Sbjct 1537 TTGCTGACGGGGGAG-CCTCGTACGTGTCGTAGGGGCCCAGCTCGGCGGCCAGTTCGCAG 1479 Query 133524 CTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TGAATAGTTGACGAACCTGGC 133582 || ||||||| ||||| |||| ||||| || ||| || || ||| | | | ||| Sbjct 1478 CTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGAT-GTTCAGCAGCTGGGC 1420 Query 133583 ATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCAAACCCTGTATGC 133641 ||| ||| || ||| | | || | || | || |||||||||| ||||| | || Sbjct 1419 CTCGGGGCTTTCAAAGGGG-TAACGCATCAGGATGAAGGCGTCGGCCAGGCCCTGGACGC 1361 Query 133642 CGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGGATAGTGGT 133701 ||| ||||| || | || || ||| | || | ||||| | || ||| || Sbjct 1360 CGATACCGATCGGCCTGTGGCGCTTGTTGGACTGATCGGCCTCGGGCACCGGGTAGAAGT 1301 Query 133702 TGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGTTTCAGCAAAA 133761 | | || ||||||||||| || || ||||| | ||| |||| | | ||| Sbjct 1300 TAATCTCTATGATCTTGTTCAGGTTCTTCACGATCACTTTGGTCACAGACTCCAGTTTCT 1241 Query 133762 CATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATACTGGCTAGAT 133821 ||||||| ||| || ||| | |||| || |||||| || || ||| |||| Sbjct 1240 TGAAGTCAAAAGTCC--GC-TCGGGGGTGACGTACATGTTGAGAGCGATGGAGGCCAGAT 1184 Query 133822 TACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCGCAGAGGTTGCTGC 133881 |||| || || ||| | | | | || | ||||| || | |||||||||||||| Sbjct 1183 TACACACAGCGACCTCATCGCCACTGGAGTATTCAACGATTTCCGTGCAGAGGTTGCTGC 1124 Query 133882 ATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCCTTGTATAGCA 133941 | |||||||| |||| || | || ||||| | ||||| || ||||| |||| Sbjct 1123 ACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCA 1064 Query 133942 TGTACGGC 133949 |||||||| Sbjct 1063 TGTACGGC 1056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431051909071384