Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq152719 109 4e-19
seq152718 82.4 5e-11
seq6427 82.4 5e-11
>seq152719
Length=2073
Score = 109 bits (120), Expect = 4e-19
Identities = 141/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|||||||| |||||||||||||| || ||| |||| |||| ||||||||| || ||
Sbjct 308 TCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAG 367
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317
||||||| ||||||||| || | || ||||| || ||| || ||||| | ||
Sbjct 368 ATGAGCCTCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATC-TTAGCTTTGACATT 426
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| || | ||| | | ||| || ||| ||||| || ||||| ||||| || |||||
Sbjct 427 CTCAATGGTGTCGTTGGGTTCAACCACCAGAGTGATAGTCTTGCCTGTGAGGGTCTTCAC 486
Query 34378 AAAGATCTGCAT 34389
||||||||| ||
Sbjct 487 AAAGATCTGAAT 498
Score = 105 bits (116), Expect = 4e-18
Identities = 140/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|||||||| |||||||||||||| || ||| |||| |||| ||||||||| || ||
Sbjct 80 TCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAG 139
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317
|| |||| |||||| || || | || |||||| || ||| || ||||| | ||
Sbjct 140 ATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTATCCTGGATC-TTAGCTTTGACATT 198
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| || | ||| | | ||| || |||| ||||||| || || || || || |||||
Sbjct 199 CTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATGGACTTACCAGTCAGGGTCTTCAC 258
Query 34378 AAAGATCTGCAT 34389
||||||||||||
Sbjct 259 AAAGATCTGCAT 270
Score = 93.3 bits (102), Expect = 3e-14
Identities = 151/215 (70%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGT 34235
|||||| || || | || ||||||||| ||||| || || |||| | || || | |
Sbjct 514 CAGCACAAGATGGATGGTGGATTCTTTCTGGATGTTATAATCTGACATGGTG-CGACCAT 572
Query 34236 CGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGT 34295
| |||| ||||||||| || || || |||| |||||| || || | || |||||| |
Sbjct 573 CTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTAT 632
Query 34296 CGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355
| ||||| |||| || | || | ||| | | ||| || |||| ||||| |
Sbjct 633 CCTGGATCTTAGCTTTTACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATAG 692
Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
| || || || || || ||||||||||||||||||
Sbjct 693 TCTTACCAGTCAGGGTCTTCACAAAGATCTGCATC 727
>seq152718
Length=3078
Score = 82.4 bits (90), Expect = 5e-11
Identities = 135/192 (70%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|||||||| ||| |||||||||| || || | || |||| ||||||||| || ||
Sbjct 2183 TCTTTCTGGATGCTGTAGTCGGAGAGAGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAG 2242
Query 34259 ATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317
|| |||| | ||| || || ||| | || ||||| || ||||| || | ||
Sbjct 2243 ATCAGCCTGTACTGTTCAGAAGGG-ATGCCTTCCTTATCCTGAATCTTAACTTTGACATT 2301
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| || | ||| | | ||| || |||| |||||||| || || || || || |||||
Sbjct 2302 CTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATGGTCTTACCAGTCAGGGTCTTCAC 2361
Query 34378 AAAGATCTGCAT 34389
||||||||||||
Sbjct 2362 AAAGATCTGCAT 2373
>seq6427
Length=3314
Score = 82.4 bits (90), Expect = 5e-11
Identities = 120/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| ||||| |||||||||||||| || ||| | || |||| ||||||||| || ||
Sbjct 3144 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 3203
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318
|| |||| |||||| || ||| | || |||||||| ||||| ||| | ||
Sbjct 3204 ATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTT 3263
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAG 34368
| || | ||| | | || || |||| |||||||| ||||| |||||
Sbjct 3264 TCGATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCCGTGAG 3313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 321002867405120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |