Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq152719 109 4e-19 seq152718 82.4 5e-11 seq6427 82.4 5e-11 >seq152719 Length=2073 Score = 109 bits (120), Expect = 4e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| |||||||||||||| || ||| |||| |||| ||||||||| || || Sbjct 308 TCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAG 367 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 ||||||| ||||||||| || | || ||||| || ||| || ||||| | || Sbjct 368 ATGAGCCTCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATC-TTAGCTTTGACATT 426 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | ||| | | ||| || ||| ||||| || ||||| ||||| || ||||| Sbjct 427 CTCAATGGTGTCGTTGGGTTCAACCACCAGAGTGATAGTCTTGCCTGTGAGGGTCTTCAC 486 Query 34378 AAAGATCTGCAT 34389 ||||||||| || Sbjct 487 AAAGATCTGAAT 498 Score = 105 bits (116), Expect = 4e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| |||||||||||||| || ||| |||| |||| ||||||||| || || Sbjct 80 TCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAG 139 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || |||| |||||| || || | || |||||| || ||| || ||||| | || Sbjct 140 ATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTATCCTGGATC-TTAGCTTTGACATT 198 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | ||| | | ||| || |||| ||||||| || || || || || ||||| Sbjct 199 CTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATGGACTTACCAGTCAGGGTCTTCAC 258 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 259 AAAGATCTGCAT 270 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGT 34235 |||||| || || | || ||||||||| ||||| || || |||| | || || | | Sbjct 514 CAGCACAAGATGGATGGTGGATTCTTTCTGGATGTTATAATCTGACATGGTG-CGACCAT 572 Query 34236 CGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGT 34295 | |||| ||||||||| || || || |||| |||||| || || | || |||||| | Sbjct 573 CTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTAT 632 Query 34296 CGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 | ||||| |||| || | || | ||| | | ||| || |||| ||||| | Sbjct 633 CCTGGATCTTAGCTTTTACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATAG 692 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 | || || || || || |||||||||||||||||| Sbjct 693 TCTTACCAGTCAGGGTCTTCACAAAGATCTGCATC 727 >seq152718 Length=3078 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||| |||||||||| || || | || |||| ||||||||| || || Sbjct 2183 TCTTTCTGGATGCTGTAGTCGGAGAGAGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAG 2242 Query 34259 ATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || |||| | ||| || || ||| | || ||||| || ||||| || | || Sbjct 2243 ATCAGCCTGTACTGTTCAGAAGGG-ATGCCTTCCTTATCCTGAATCTTAACTTTGACATT 2301 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | ||| | | ||| || |||| |||||||| || || || || || ||||| Sbjct 2302 CTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATGGTCTTACCAGTCAGGGTCTTCAC 2361 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 2362 AAAGATCTGCAT 2373 >seq6427 Length=3314 Score = 82.4 bits (90), Expect = 5e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||||| || ||| | || |||| ||||||||| || || Sbjct 3144 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 3203 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| |||||| || ||| | || |||||||| ||||| ||| | || Sbjct 3204 ATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTT 3263 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAG 34368 | || | ||| | | || || |||| |||||||| ||||| ||||| Sbjct 3264 TCGATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCCGTGAG 3313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321002867405120