Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq496362 185 8e-42 >seq496362 Length=882 Score = 185 bits (204), Expect = 8e-42 Identities = 489/727 (67%), Gaps = 25/727 (3%) Strand=Plus/Minus Query 16043 TCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAA 16102 ||||| || | ||| | || | |||||| | ||||| |||| ||| || |||||||| Sbjct 828 TCGCAACCTAGTTCTACTAAAAGTCTATCGGTTACAAACTCTAAATATTGCGTCATTAAA 769 Query 16103 T-CACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTAT 16161 | | || ||||| || ||||| | ||||| | || |||||| | ||| | | |||| || Sbjct 768 TTCGCA-TTCATACCAATTAAACTTACAGGAAGTGATTCTGTAATAAATTCTCTTTCGAT 710 Query 16162 ATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTG 16221 || | || ||||| || || ||| | | ||| | |||| ||||| Sbjct 709 GTTTAAGGCGTCAATAATAATGGTTCTGATTCTGTCTTTTGGCACTTTATTTACCAAGTG 650 Query 16222 ---TTTAAACATTATACAA-GCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACT 16277 || || || || || |||||||| || | |||||||| | | || || | Sbjct 649 ATGTTGGTGCAA-ATGCACTGCGAAATCACAGTGAACACCTTCGTCACGAGAAATCAATT 591 Query 16278 CGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAA 16337 ||||||| ||||| | |||||||| | ||||||||||| | ||| || || | || Sbjct 590 CGTTTGAGAATGTCAATCCTGGCATCAAACCTCGTTTTTTCAACCAGAAAATGGAACAAA 531 Query 16338 ATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACG 16397 | | ||| || ||||| || ||||| ||||| ||||| |||| ||||||||| || | | Sbjct 530 AAGCACCTGAGAAGAAAATTCCTTCCACTGCTGCAAAAGCAATCAATCGCTCTGCGAAAG 471 Query 16398 TTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACA-CAGTTC 16456 | | | | || ||||||| | ||||| | ||||| | ||| | | ||| Sbjct 470 ----AATCTGA--ATCAATCCATTGAATTGCCCAGTCCGCTTTCTTTTTGATAGCAGGAA 417 Query 16457 ATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCT--ATCTAAAATATAAGTAT 16514 | | |||| ||| || ||||||| ||||| |||| ||| | |||||| | Sbjct 416 AAACT-TCTAATGCGTTGAATAAAT--CGGCTTTCTCTGCTTCGTCTTTTACATAAGTGT 360 Query 16515 CTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-A 16573 | |||| || |||| |||| |||||||| ||||| || || |||||||| | Sbjct 359 CGATTAACAAGGAATACGTTTCGCTGTGAATATTTTCCATCATGATTTGGAAACCATAGA 300 Query 16574 AAGCATCTAGCTTC-GGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTT 16632 ||| || | ||||| | ||| ||| |||||| ||| |||| || | ||||| || Sbjct 299 AAGAATTTCGCTTCAGCATA-TTGCACTTCATTTACAAAGTTTTCAGCAAGATTTTCATT 241 Query 16633 AACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGT- 16691 || ||||| || ||| || ||||| || | |||||||| ||||| | || ||||| Sbjct 240 TACAATTCCGTCTGAAGCGGCGAAAAATGCTAAAATGTGTTTGATAAAGTATTGTTCGTC 181 Query 16692 TATCTGAAAGTT-TTA-ACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGT 16749 | | | || || ||| |||||| ||||||| ||| ||||| | ||||| |||| Sbjct 180 TTTATTCAACTTGTTATTCCAGTCGTTTAAATCTTGTGACAAATCAATTTCTTCGGCAGT 121 Query 16750 CCAAAAA 16756 ||| ||| Sbjct 120 CCAGAAA 114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 459473862737200