Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq20438 289 2e-73
seq153820 98.7 7e-16
>seq20438
Length=3122
Score = 289 bits (320), Expect = 2e-73
Identities = 468/662 (71%), Gaps = 16/662 (2%)
Strand=Plus/Minus
Query 107676 TTCAT-ACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGT 107734
||||| |||||||| || ||| |||| ||| ||||| |||||||||||||| || ||
Sbjct 1462 TTCATTACAGTTCCT-CTCAGTGAAGAGGAGAATGACTTTCCCATTGCCTACTCCATTGT 1404
Query 107735 GGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAA 107794
| |||||||||| ||||||| ||||| || || || ||||| || ||| | ||||| ||
Sbjct 1403 GATCCATGAGAAAATTGAAATGTTTGAGCGACTTCTTCGAGCAGTTTATACACCTCAAAA 1344
Query 107795 CATATACTGTGTCCACGTGGATGTGAAGTCCCCAGA-GACTTTCAAAGAGGCGGTCAAGG 107853
||| |||||||| |||||||| |||||| | || || ||||| | |||| || |||
Sbjct 1343 CATCTACTGTGTGCACGTGGACCAAAAGTCCTCCGAAGAATTTCAGA-AGGCTGTGGAGG 1285
Query 107854 CCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATG 107913
| ||| || |||| ||||||||||| || || || | || | | |||| ||||||
Sbjct 1284 CTATTGTTGCCTGTTTCCCCAATGTGTTTATAGCTACAAAACTAGAAAAGGTGATTTATG 1225
Query 107914 CCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAG 107973
||||||||||| | ||||| || || |||||||| ||| ||| || | || | | |
Sbjct 1224 CCTCCTGGTCCCGTGTGCAGGCGGATCTGAACTGCATGACAGATCTGTTGAAGTCCCCCG 1165
Query 107974 TGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCG 108033
| |||| |||| | || || || || ||||| |||||||| ||||| ||||||| |
Sbjct 1164 TAAAGTGGAGGTACCTGCTCAACACCTGTGGGACCGACTTCCCTATAAAAACCAATGGAG 1105
Query 108034 AGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTT 108093
||||||| |||||||| | || || || |||||||||||| |||||| |
Sbjct 1104 AGATGGTTAAAATACTCAAGATCCTAAATGGAAAAAACAGTATGGAGACTGAGGCGGCCG 1045
Query 108094 CTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTA 108153
|| | ||| ||| || ||| | || | || ||||| | ||| ||| |
Sbjct 1044 GCGAATACAAGAAAGCCCGTTGGCAGTATCATTACATTGTGACGG--ACAGTGT----CA 991
Query 108154 CCAGCA-AGATGA-AGG---ACCCTCCCCCTGATAATTTACCC-ATGTTCACAGGGAATG 108207
||| | |||||| ||| | | ||| | ||| | ||| ||||||||||| ||||
Sbjct 990 TCAGGACAGATGAGAGGAAAAGTCCCCCGCCGATTAGCAGCCCGATGTTCACAGGAAATG 931
Query 108208 CCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAA 108267
|||| ||||||| ||| ||| |||||| ||| || | | || | | | || |
Sbjct 930 CCTACTTTGTGGTCTCAAGAGACTTTGTGACACACGTGATGCAGGACACAGAGGCTCAGA 871
Query 108268 GACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTC 108327
||| | || ||| || ||||| |||||||| ||||| ||| | |||||||| || |
Sbjct 870 AACTCCTGGAGTGGTCGAAGGACACATATAGCCCTGACGAGCACTTGTGGGCCACTCTAC 811
Query 108328 AG 108329
||
Sbjct 810 AG 809
>seq153820
Length=569
Score = 98.7 bits (108), Expect = 7e-16
Identities = 202/296 (68%), Gaps = 11/296 (4%)
Strand=Plus/Minus
Query 108269 ACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCA 108328
|||| | || ||| ||||||||||||| || || || ||| |||||||| ||| ||||
Sbjct 335 ACTGATGGAGTGGTTCAAAGACACCTACAGTCCTGATGAATTTCTCTGGGCAACCATTCA 276
Query 108329 GCG--TGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGAC 108386
||| ||| ||| | | |||||||| | | ||| || || |||| ||||||
Sbjct 275 GCGAATGC-CCG-GAGTTCCTGGCTCAATACGACCTCACAGGAAAAATGACATGTCAGAC 218
Query 108387 ATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGG-----AGATGTCAGCA 108441
| | ||||||||| | || || |||||||||| |||||||| || ||| |
Sbjct 217 CTCAATGCCATCGCTCGCCTGGTGAAGTGGCAGTGGCACGAGGGGTCGCAGGATTCACC- 159
Query 108442 TGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGG 108501
|| ||| || || || |||| ||| |||| || ||| | | || |
Sbjct 158 -GGACGCGGTGTACCCAGAGTGTCAAGGAAGCCACGTCAGGGGAATATGCGTAAATGGTG 100
Query 108502 CCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557
|||||||| | | ||||| ||| || | ||||| ||||| || ||||||||||||
Sbjct 99 CCGGGGACTTACAGTGGATGCTCAAGCAGCATCATCTCTTTGCCAACAAGTTTGAC 44
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 346038293097948
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |