Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq20438 289 2e-73 seq153820 98.7 7e-16 >seq20438 Length=3122 Score = 289 bits (320), Expect = 2e-73 Identities = 468/662 (71%), Gaps = 16/662 (2%) Strand=Plus/Minus Query 107676 TTCAT-ACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGT 107734 ||||| |||||||| || ||| |||| ||| ||||| |||||||||||||| || || Sbjct 1462 TTCATTACAGTTCCT-CTCAGTGAAGAGGAGAATGACTTTCCCATTGCCTACTCCATTGT 1404 Query 107735 GGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAA 107794 | |||||||||| ||||||| ||||| || || || ||||| || ||| | ||||| || Sbjct 1403 GATCCATGAGAAAATTGAAATGTTTGAGCGACTTCTTCGAGCAGTTTATACACCTCAAAA 1344 Query 107795 CATATACTGTGTCCACGTGGATGTGAAGTCCCCAGA-GACTTTCAAAGAGGCGGTCAAGG 107853 ||| |||||||| |||||||| |||||| | || || ||||| | |||| || ||| Sbjct 1343 CATCTACTGTGTGCACGTGGACCAAAAGTCCTCCGAAGAATTTCAGA-AGGCTGTGGAGG 1285 Query 107854 CCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATG 107913 | ||| || |||| ||||||||||| || || || | || | | |||| |||||| Sbjct 1284 CTATTGTTGCCTGTTTCCCCAATGTGTTTATAGCTACAAAACTAGAAAAGGTGATTTATG 1225 Query 107914 CCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAG 107973 ||||||||||| | ||||| || || |||||||| ||| ||| || | || | | | Sbjct 1224 CCTCCTGGTCCCGTGTGCAGGCGGATCTGAACTGCATGACAGATCTGTTGAAGTCCCCCG 1165 Query 107974 TGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCG 108033 | |||| |||| | || || || || ||||| |||||||| ||||| ||||||| | Sbjct 1164 TAAAGTGGAGGTACCTGCTCAACACCTGTGGGACCGACTTCCCTATAAAAACCAATGGAG 1105 Query 108034 AGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTT 108093 ||||||| |||||||| | || || || |||||||||||| |||||| | Sbjct 1104 AGATGGTTAAAATACTCAAGATCCTAAATGGAAAAAACAGTATGGAGACTGAGGCGGCCG 1045 Query 108094 CTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTA 108153 || | ||| ||| || ||| | || | || ||||| | ||| ||| | Sbjct 1044 GCGAATACAAGAAAGCCCGTTGGCAGTATCATTACATTGTGACGG--ACAGTGT----CA 991 Query 108154 CCAGCA-AGATGA-AGG---ACCCTCCCCCTGATAATTTACCC-ATGTTCACAGGGAATG 108207 ||| | |||||| ||| | | ||| | ||| | ||| ||||||||||| |||| Sbjct 990 TCAGGACAGATGAGAGGAAAAGTCCCCCGCCGATTAGCAGCCCGATGTTCACAGGAAATG 931 Query 108208 CCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAA 108267 |||| ||||||| ||| ||| |||||| ||| || | | || | | | || | Sbjct 930 CCTACTTTGTGGTCTCAAGAGACTTTGTGACACACGTGATGCAGGACACAGAGGCTCAGA 871 Query 108268 GACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTC 108327 ||| | || ||| || ||||| |||||||| ||||| ||| | |||||||| || | Sbjct 870 AACTCCTGGAGTGGTCGAAGGACACATATAGCCCTGACGAGCACTTGTGGGCCACTCTAC 811 Query 108328 AG 108329 || Sbjct 810 AG 809 >seq153820 Length=569 Score = 98.7 bits (108), Expect = 7e-16 Identities = 202/296 (68%), Gaps = 11/296 (4%) Strand=Plus/Minus Query 108269 ACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCA 108328 |||| | || ||| ||||||||||||| || || || ||| |||||||| ||| |||| Sbjct 335 ACTGATGGAGTGGTTCAAAGACACCTACAGTCCTGATGAATTTCTCTGGGCAACCATTCA 276 Query 108329 GCG--TGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGAC 108386 ||| ||| ||| | | |||||||| | | ||| || || |||| |||||| Sbjct 275 GCGAATGC-CCG-GAGTTCCTGGCTCAATACGACCTCACAGGAAAAATGACATGTCAGAC 218 Query 108387 ATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGG-----AGATGTCAGCA 108441 | | ||||||||| | || || |||||||||| |||||||| || ||| | Sbjct 217 CTCAATGCCATCGCTCGCCTGGTGAAGTGGCAGTGGCACGAGGGGTCGCAGGATTCACC- 159 Query 108442 TGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGG 108501 || ||| || || || |||| ||| |||| || ||| | | || | Sbjct 158 -GGACGCGGTGTACCCAGAGTGTCAAGGAAGCCACGTCAGGGGAATATGCGTAAATGGTG 100 Query 108502 CCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 |||||||| | | ||||| ||| || | ||||| ||||| || |||||||||||| Sbjct 99 CCGGGGACTTACAGTGGATGCTCAAGCAGCATCATCTCTTTGCCAACAAGTTTGAC 44 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346038293097948