Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq44246 127 4e-24 >seq44246 Length=4029 Score = 127 bits (140), Expect = 4e-24 Identities = 397/612 (65%), Gaps = 7/612 (1%) Strand=Plus/Plus Query 248799 CTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCT 248858 || || || |||||| ||| | ||||| | ||||| ||||||||| ||| || || Sbjct 258 CTTCGACAGAGATTTCTCCTACAACTTCTTCGGCTTCAAGACGCTGGAGCGATCCTACCT 317 Query 248859 CCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGT 248918 || || || | ||||| | | ||| || ||||||||| | ||| | ||| | || Sbjct 318 GCTGAAGATCAACGGCAAAGTGGCGGAGCGGCCGCAGCACATGCTCATGAGGGTGTCGGT 377 Query 248919 CGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACC--GGAATGAGTGAA 248976 ||| || |||||| || || || || ||||||| |||| | | | | ||| Sbjct 378 CGGAATCCACAAGACGGATATCGACGCCGCCATCGAGACCTACAACCTGCTCTCGGAGAA 437 Query 248977 CGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTG 249036 ||| | || || ||| | || |||||||||||||| || ||| | |||||| Sbjct 438 G--TGGTTCACCCACGCCTCCCCCACGCTCTTCAACGCAGGAACCAACCGGCCTCAGCTC 495 Query 249037 AGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTT 249096 | ||||| || || ||||| | |||||| |||| ||||| || |||||||| Sbjct 496 TCCAGCTGCTTCCTGCTCACCATGAAGGACGACAGCATCGAGGGCATCTACGACACGCTG 555 Query 249097 AAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATC 249156 || ||| || || || || | || || ||||||||| | ||||| | |||| Sbjct 556 AAGCAGTGTGCACTCATCTCCAAGTCGGCAGGAGGAATCGGTGTGGCCGTCAGCTGCATC 615 Query 249157 CGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTC 249216 ||| | | || |||||| || || || || | | || | || ||| | Sbjct 616 CGATCCACCGGGAGCTACATCGCCGGCACCAACGGCAACTCCAACGGGCTGGTCCCCATG 675 Query 249217 CTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGG 249273 || | || | ||| || | | || |||||| ||| | ||| || Sbjct 676 CTGAGGGTCTACAACAACACAGCACGCTATGTCGACCAGGGCGGCAACAAGCGACCCGGC 735 Query 249274 TCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAA 249333 | ||||||||||| |||| ||||||| || | || || |||||||| |||| Sbjct 736 GCCTTCGCCATGTACCTGGAGCCGTGGCACTTTGACGTGTTCGACTTCCTGGAGCTGAAG 795 Query 249334 AAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCC 249393 ||||||| || || ||| |||||| | || |||||||||||| ||||| || || Sbjct 796 AAGAACACGGGGAAGGAGGAGCAGAGAGCCAGAGATCTCTTCTACGGCTTGTGGATCCCC 855 Query 249394 GACTTGTTCATG 249405 ||| |||||||| Sbjct 856 GACCTGTTCATG 867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1066536736868736