Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_002730.1 Length=38297 Score E Sequences producing significant alignments: (Bits) Value seq466164 165 2e-36 seq513023 105 2e-18 seq477953 84.2 5e-12 >seq466164 Length=1079 Score = 165 bits (182), Expect = 2e-36 Identities = 658/1014 (65%), Gaps = 54/1014 (5%) Strand=Plus/Plus Query 24839 GAGGAAGCGATCAAGCTTAACCAACTGGAAGAAATTCTCGCGCCGGTTCGCCAGCGAATC 24898 || |||||| | ||||||||||| || || || || || || || |||||| Sbjct 57 GAAGAAGCGCTTAAGCTTAACCAGCTTGATGAGATCCTTAAACCTGT----CAGCGACAA 112 Query 24899 GTT----ACCGACCTTGAAACAGAGCTTGCTCACTTCAT-GATGAATAACGGTGCGTTGT 24953 | | || ||| |||||| ||||||||||| ||||| | | || | |||||| | Sbjct 113 GATTAACACTGACATTGAAATTGAGCTTGCTCAGTTCATCGGTCAACAT-GGTGCGCTTA 171 Query 24954 CACTTGGTAGCCCCAATACTCCAATCACCAAATGGTCTGATGTTGCGCAGACGGCATCTT 25013 ||||||| || || ||||| | || ||| |||||| ||||| ||||| || | Sbjct 172 GCCTTGGTACGCCAGGCACAGCAATCTCTAAGTGGAGTGATGTAGCGCAAACGGCTTCAT 231 Query 25014 TCCTGAAAGACCTCGGCGTTAATGAAGGTGAAAACT-ATGCTGTAATGGATCCATGGTCT 25072 || | |||||| | ||||||| | || | || | || || || || || ||| || Sbjct 232 TCTTAAAAGACTTGGGCGTTAGC-ACTATGGACGCTTACGCAGTTATCGACCCGTGGGCT 290 Query 25073 GCACAGCGACTTGCTGATGCGCAGACTGGTTTGCACGCTTCAGATCAATTGGTTCGTACT 25132 |||||| | ||||| || || | || | | | | ||| || || ||||| Sbjct 291 GCACAGGCTTTGGCTGACGCACAAGCAGGCCTTAATACGGCTGATAGCTTAGTACGTACA 350 Query 25133 GCATGGGAGAATGCGCAGATCCCAACCAATTTTGGCGGCATTCGCGCACTGATGTCTAAT 25192 || ||||| |||| ||||| | | || ||||| ||||||||||| || ||||| || Sbjct 351 GCGTGGGAAGATGCTCAGATTTCTAAAAACTTTGGTGGCATTCGCGCGCTAATGTCAAAC 410 Query 25193 GGGCTTGCCTCTCGTAC-GCAGG-----GGGCA---TTTGGCGGAACACTGACAGTCAAA 25243 || || ||||| || || || || |||| ||||||| | | || || || Sbjct 411 GGTCTAGCCTCACGCACAGCCGGAACCTTGGCAGGCGTTGGCGGTA---TTACCGTTAAG 467 Query 25244 ACACAGCCAACTGTTACCTATAACGCAGTTAAAGACTCATACCAGTTCACTGTAACATTG 25303 || ||||| || || || ||| || |||||| | ||| | | | || || Sbjct 468 ACTACCCCAACAGTGACTTACCTCGCTGTCAAAGACACTTACGAAATGAGCGTTGTTTTA 527 Query 25304 ACCGGAGCGACAACCAGCGTTACAGGTTTCCTGAAAGCTGGTGATCAGGTTAAATTCACC 25363 || || | |||| | | | || ||| || ||||| || ||| | | ||| Sbjct 528 ACTGGTG---CAACTACCTTGAC------CCTTAAGGCTGGCGACCAGTTGGAGTTCCAA 578 Query 25364 AATACCTACTGGCTGCAACAGCAGACCAAACAGGCGTTGTATAACGGA---GCCACACCA 25420 | || |||||||| | |||||| | || || | || || | || ||||| ||| Sbjct 579 AGCACTTACTGGCTAAACCAGCAGTCTAAGCAAG---TGCTTAGCCGAAATGCCACTCCA 635 Query 25421 ATTAGCTTCACTGCAACGGTTACTGCTGATGCTAATTCAGACAGCAGTGGCGATGTGACG 25480 |||| ||||| || || || ||| ||||| | | | ||| ||| ||||| || Sbjct 636 ATTAAGTTCACGGCTACCGTCCTTGCAGATGCGACCGCCG-TAGC--TGGTGATGTAACC 692 Query 25481 GTTACGCTTTCTGGAGTTCCGATTTATGACACTACAAACCCGCAGTACAACTCTGTAAGT 25540 |||| |||||||| ||| | ||| |||| || ||| || |||||| | ||||| Sbjct 693 GTTAGCCTTTCTGGTGTTGCAATTGTTGACGGCACTAACAGCCAATACAACACAGTAAG- 751 Query 25541 CGTCAGGTA--GCGGCAGGCGATGCCGTATCTGTGGTAGGCACTGCTAGCCAGACAATGA 25598 || | | || | ||||||| || ||| | | ||| | ||| || || | Sbjct 752 CG-CGGCTATCGTGGCAGGCATGGCGGTAACAATCAAAGGGGCCGCTGGCGTAACGTACA 810 Query 25599 AGCCCAACCTGTTCTATAACAAGTTCTTCTGTGGCCTTGGCT-CTATCCCACTGCCGAAA 25657 |||| ||| ||||||| | ||| || | || ||| | || | || || || Sbjct 811 AGCCAAACTTGTTCTACACTAAG-CAATCAATCGCAATGGGTACTGTAGAGCTACCAAAG 869 Query 25658 CTGCACAGTATTGATTCTGCTGT--TG-CAA---CATATGAAGGTTTCTCAATCCGCGTA 25711 |||||||| || ||||||||||| || | | | | |||| | || || || Sbjct 870 CTGCACAGCATCGATTCTGCTGTAATGTCTAGCGCTAAGTCAGGTCTAAGTATTCGTGTT 929 Query 25712 CATAAATACGCAGATGGCGATGCCAACGTGCAAAAAATGCGCTTTGACTTACTGCCTGCA 25771 ||||||||| |||| || || ||| ||| | ||||||||||| | ||||| ||| Sbjct 930 CATAAATACTCAGACGGACGCGCTAACAAGCAGATGATGCGCTTTGATGTTCTGCCAGCA 989 Query 25772 TATGTGTGCTTTAACCCTCACATGGGCGGTCAGTTCTTCGGTAATCCGTAATAA 25825 | || | ||| ||||| ||||||| ||||||||||| || ||| | || ||| Sbjct 990 TTTGCGATCTTAAACCCGCACATGGCTGGTCAGTTCTTTGGCAATGCATAGTAA 1043 >seq513023 Length=489 Score = 105 bits (116), Expect = 2e-18 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 21737 CGCATCATTGCAGAATACCGCAATAACAGAATCACCGTTAAGTTTCGTCCTGGTGACAGA 21796 |||||||| | || ||||| || | | || | || | ||||| ||| ||| | Sbjct 100 CGCATCATATCTGAGTACCGAAAGCAGCGTATATCTGTAAGATTTCGCCCTAATGATACT 159 Query 21797 GAGGCAAGCGAAGAGTTAGCCAATAAATTAAATGGTCTGTTCCGTGCTGACTACGAAGAA 21856 ||| ||||||||||| || | | || | || ||| ||| |||||||||||||| || Sbjct 160 GAGTCAAGCGAAGAGCTATCAGAAAAGCTTAACGGTAAGTTTCGTGCTGACTACGAGCAA 219 Query 21857 A-CTGATGGCGGTGAGGCTTGCGATAATGCATTTGACGACGCTGCTACTGGTGGTTTCGG 21915 | || | || |||||| | ||||||||||||||| ||||||| ||||||| || || Sbjct 220 AGCTCA-GGAAATGAGGCGTTCGATAATGCATTTGATGACGCTGTAGCTGGTGGCTTTGG 278 Query 21916 TTGCTTCCGT 21925 |||||||||| Sbjct 279 TTGCTTCCGT 288 >seq477953 Length=379 Score = 84.2 bits (92), Expect = 5e-12 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 17665 CCACCGTCGAACTCTCTCCAGTTGCTGGACGAAACGTTCTCGGTATCCGGGACGGAATTA 17724 ||||||||||||||||| || |||||||||||||||||| | ||| ||| ||||| | Sbjct 1 CCACCGTCGAACTCTCTACAACTGCTGGACGAAACGTTCTTGCCATCAGGGCTGGAATAA 60 Query 17725 TCCGCGACCAAACAGCACTGAGAACGCTTCAGGA 17758 || |||||| | || |||| | || ||||||| Sbjct 61 TCAAGGACCAAGCTGCGCTGAAAGCGTTTCAGGA 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 121664803121316