Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_002730.1
Length=38297
Score E
Sequences producing significant alignments: (Bits) Value
seq466164 165 2e-36
seq513023 105 2e-18
seq477953 84.2 5e-12
>seq466164
Length=1079
Score = 165 bits (182), Expect = 2e-36
Identities = 658/1014 (65%), Gaps = 54/1014 (5%)
Strand=Plus/Plus
Query 24839 GAGGAAGCGATCAAGCTTAACCAACTGGAAGAAATTCTCGCGCCGGTTCGCCAGCGAATC 24898
|| |||||| | ||||||||||| || || || || || || || ||||||
Sbjct 57 GAAGAAGCGCTTAAGCTTAACCAGCTTGATGAGATCCTTAAACCTGT----CAGCGACAA 112
Query 24899 GTT----ACCGACCTTGAAACAGAGCTTGCTCACTTCAT-GATGAATAACGGTGCGTTGT 24953
| | || ||| |||||| ||||||||||| ||||| | | || | |||||| |
Sbjct 113 GATTAACACTGACATTGAAATTGAGCTTGCTCAGTTCATCGGTCAACAT-GGTGCGCTTA 171
Query 24954 CACTTGGTAGCCCCAATACTCCAATCACCAAATGGTCTGATGTTGCGCAGACGGCATCTT 25013
||||||| || || ||||| | || ||| |||||| ||||| ||||| || |
Sbjct 172 GCCTTGGTACGCCAGGCACAGCAATCTCTAAGTGGAGTGATGTAGCGCAAACGGCTTCAT 231
Query 25014 TCCTGAAAGACCTCGGCGTTAATGAAGGTGAAAACT-ATGCTGTAATGGATCCATGGTCT 25072
|| | |||||| | ||||||| | || | || | || || || || || ||| ||
Sbjct 232 TCTTAAAAGACTTGGGCGTTAGC-ACTATGGACGCTTACGCAGTTATCGACCCGTGGGCT 290
Query 25073 GCACAGCGACTTGCTGATGCGCAGACTGGTTTGCACGCTTCAGATCAATTGGTTCGTACT 25132
|||||| | ||||| || || | || | | | | ||| || || |||||
Sbjct 291 GCACAGGCTTTGGCTGACGCACAAGCAGGCCTTAATACGGCTGATAGCTTAGTACGTACA 350
Query 25133 GCATGGGAGAATGCGCAGATCCCAACCAATTTTGGCGGCATTCGCGCACTGATGTCTAAT 25192
|| ||||| |||| ||||| | | || ||||| ||||||||||| || ||||| ||
Sbjct 351 GCGTGGGAAGATGCTCAGATTTCTAAAAACTTTGGTGGCATTCGCGCGCTAATGTCAAAC 410
Query 25193 GGGCTTGCCTCTCGTAC-GCAGG-----GGGCA---TTTGGCGGAACACTGACAGTCAAA 25243
|| || ||||| || || || || |||| ||||||| | | || || ||
Sbjct 411 GGTCTAGCCTCACGCACAGCCGGAACCTTGGCAGGCGTTGGCGGTA---TTACCGTTAAG 467
Query 25244 ACACAGCCAACTGTTACCTATAACGCAGTTAAAGACTCATACCAGTTCACTGTAACATTG 25303
|| ||||| || || || ||| || |||||| | ||| | | | || ||
Sbjct 468 ACTACCCCAACAGTGACTTACCTCGCTGTCAAAGACACTTACGAAATGAGCGTTGTTTTA 527
Query 25304 ACCGGAGCGACAACCAGCGTTACAGGTTTCCTGAAAGCTGGTGATCAGGTTAAATTCACC 25363
|| || | |||| | | | || ||| || ||||| || ||| | | |||
Sbjct 528 ACTGGTG---CAACTACCTTGAC------CCTTAAGGCTGGCGACCAGTTGGAGTTCCAA 578
Query 25364 AATACCTACTGGCTGCAACAGCAGACCAAACAGGCGTTGTATAACGGA---GCCACACCA 25420
| || |||||||| | |||||| | || || | || || | || ||||| |||
Sbjct 579 AGCACTTACTGGCTAAACCAGCAGTCTAAGCAAG---TGCTTAGCCGAAATGCCACTCCA 635
Query 25421 ATTAGCTTCACTGCAACGGTTACTGCTGATGCTAATTCAGACAGCAGTGGCGATGTGACG 25480
|||| ||||| || || || ||| ||||| | | | ||| ||| ||||| ||
Sbjct 636 ATTAAGTTCACGGCTACCGTCCTTGCAGATGCGACCGCCG-TAGC--TGGTGATGTAACC 692
Query 25481 GTTACGCTTTCTGGAGTTCCGATTTATGACACTACAAACCCGCAGTACAACTCTGTAAGT 25540
|||| |||||||| ||| | ||| |||| || ||| || |||||| | |||||
Sbjct 693 GTTAGCCTTTCTGGTGTTGCAATTGTTGACGGCACTAACAGCCAATACAACACAGTAAG- 751
Query 25541 CGTCAGGTA--GCGGCAGGCGATGCCGTATCTGTGGTAGGCACTGCTAGCCAGACAATGA 25598
|| | | || | ||||||| || ||| | | ||| | ||| || || |
Sbjct 752 CG-CGGCTATCGTGGCAGGCATGGCGGTAACAATCAAAGGGGCCGCTGGCGTAACGTACA 810
Query 25599 AGCCCAACCTGTTCTATAACAAGTTCTTCTGTGGCCTTGGCT-CTATCCCACTGCCGAAA 25657
|||| ||| ||||||| | ||| || | || ||| | || | || || ||
Sbjct 811 AGCCAAACTTGTTCTACACTAAG-CAATCAATCGCAATGGGTACTGTAGAGCTACCAAAG 869
Query 25658 CTGCACAGTATTGATTCTGCTGT--TG-CAA---CATATGAAGGTTTCTCAATCCGCGTA 25711
|||||||| || ||||||||||| || | | | | |||| | || || ||
Sbjct 870 CTGCACAGCATCGATTCTGCTGTAATGTCTAGCGCTAAGTCAGGTCTAAGTATTCGTGTT 929
Query 25712 CATAAATACGCAGATGGCGATGCCAACGTGCAAAAAATGCGCTTTGACTTACTGCCTGCA 25771
||||||||| |||| || || ||| ||| | ||||||||||| | ||||| |||
Sbjct 930 CATAAATACTCAGACGGACGCGCTAACAAGCAGATGATGCGCTTTGATGTTCTGCCAGCA 989
Query 25772 TATGTGTGCTTTAACCCTCACATGGGCGGTCAGTTCTTCGGTAATCCGTAATAA 25825
| || | ||| ||||| ||||||| ||||||||||| || ||| | || |||
Sbjct 990 TTTGCGATCTTAAACCCGCACATGGCTGGTCAGTTCTTTGGCAATGCATAGTAA 1043
>seq513023
Length=489
Score = 105 bits (116), Expect = 2e-18
Identities = 139/190 (73%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 21737 CGCATCATTGCAGAATACCGCAATAACAGAATCACCGTTAAGTTTCGTCCTGGTGACAGA 21796
|||||||| | || ||||| || | | || | || | ||||| ||| ||| |
Sbjct 100 CGCATCATATCTGAGTACCGAAAGCAGCGTATATCTGTAAGATTTCGCCCTAATGATACT 159
Query 21797 GAGGCAAGCGAAGAGTTAGCCAATAAATTAAATGGTCTGTTCCGTGCTGACTACGAAGAA 21856
||| ||||||||||| || | | || | || ||| ||| |||||||||||||| ||
Sbjct 160 GAGTCAAGCGAAGAGCTATCAGAAAAGCTTAACGGTAAGTTTCGTGCTGACTACGAGCAA 219
Query 21857 A-CTGATGGCGGTGAGGCTTGCGATAATGCATTTGACGACGCTGCTACTGGTGGTTTCGG 21915
| || | || |||||| | ||||||||||||||| ||||||| ||||||| || ||
Sbjct 220 AGCTCA-GGAAATGAGGCGTTCGATAATGCATTTGATGACGCTGTAGCTGGTGGCTTTGG 278
Query 21916 TTGCTTCCGT 21925
||||||||||
Sbjct 279 TTGCTTCCGT 288
>seq477953
Length=379
Score = 84.2 bits (92), Expect = 5e-12
Identities = 75/94 (80%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 17665 CCACCGTCGAACTCTCTCCAGTTGCTGGACGAAACGTTCTCGGTATCCGGGACGGAATTA 17724
||||||||||||||||| || |||||||||||||||||| | ||| ||| ||||| |
Sbjct 1 CCACCGTCGAACTCTCTACAACTGCTGGACGAAACGTTCTTGCCATCAGGGCTGGAATAA 60
Query 17725 TCCGCGACCAAACAGCACTGAGAACGCTTCAGGA 17758
|| |||||| | || |||| | || |||||||
Sbjct 61 TCAAGGACCAAGCTGCGCTGAAAGCGTTTCAGGA 94
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 121664803121316
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |