Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq152719 93.3 3e-14 seq59939 87.8 1e-12 >seq152719 Length=2073 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||| ||||| |||||||||||| || ||| |||| |||| Sbjct 63 CAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTCCA 122 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || ||||| || |||| || ||| || || ||||| | |||||||| ||| | Sbjct 123 GCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTATCCTGGA 182 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || || || | | | | |||| | || ||||||| || || | ||| | Sbjct 183 TCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATGGACTTAC 242 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | ||||| |||||||||||||| ||||| Sbjct 243 CAGTCAGGGTCTTCACAAAGATCTGCAT 270 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 || ||||| ||||| || || || |||| | || ||||| || || ||||| || Sbjct 536 TCTTTCTGGATGTTATAATCTGACATGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAG 595 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || ||| || || ||||| | |||||||| ||| || || || || | Sbjct 596 ATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTATCCTGGATCTTAGCTTTTACATTC 655 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | || ||||||| || || ||||| || ||||| ||||||||| Sbjct 656 TCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATAGTCTTACCAGTCAGGGTCTTCACA 715 Query 45326 AAGATTTGCATGTTG 45340 ||||| ||||| ||| Sbjct 716 AAGATCTGCATCTTG 730 >seq59939 Length=800 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || ||||| || |||||||| || |||| || ||| || || || || | || |||||| Sbjct 11 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTG 70 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| || || ||| || | | |||| | | ||| ||||| | ||| || Sbjct 71 TCCTGGATCTTGGCCTTGACATTTTCGATTGTGTCACTAGGCTCAACCTCGAGGGTGATG 130 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||||||||| || |||||||||||||| |||||||| Sbjct 131 GTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 392544918905542