Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq496362 208 7e-49
>seq496362
Length=882
Score = 208 bits (230), Expect = 7e-49
Identities = 526/789 (67%), Gaps = 37/789 (5%)
Strand=Plus/Minus
Query 13961 AGTGATATATTTTCCATAAAATCAAATGGATTTGT--TGACATAAACACTTTATCACAAC 14018
||||| || | |||||||| || ||||| |||| || || ||| || | ||||
Sbjct 879 AGTGAAATCATGTCCATAAAGTCGAATGGGTTTGGCGTGTTGTATTCACGTT--CGCAAC 822
Query 14019 CTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAAT 14078
||||||||| || | |||||| | | ||||| | |||||| | |||||||| ||
Sbjct 821 CTAGTTCTACTAAAAGTCTATCGGTTACAAACTCTAAATATTGCGTCATTAAATTCGCAT 762
Query 14079 TCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAG 14138
||||||| |||| ||||||||| | | || | ||||||| |||| || | |
Sbjct 761 TCATACCAATTAAACTTACAGGAAGTGATTCTGTAATAAATTCTCTTTCGATGTTTAAGG 702
Query 14139 CCTCGTTTATAATAATCGTAATAATT---TCATTAGAAGGAGGATATTTTA-----GATG 14190
| || |||||||| || | ||| || || | | | ||||| ||||
Sbjct 701 CGTCA---ATAATAATGGTTCTGATTCTGTCTTTTG--GCACTTTATTTACCAAGTGATG 647
Query 14191 TT--TAAAAATTAAACAC-GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 14247
|| | |||| ||| || |||||||| |||| || || || | | ||| | |||
Sbjct 646 TTGGTGCAAATG---CACTGCGAAATCACAGTGAACACCTTCGTCACGAGAAATCAATTC 590
Query 14248 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 14307
|||||| ||||| |||||||||||||| ||||||||||| ||||| || || | | ||
Sbjct 589 GTTTGAGAATGTCAATCCTGGCATCAAACCTCGTTTTTTCAACCAGAAAATGGAACAAAA 530
Query 14308 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGA 14367
| || || ||||| ||||| || ||||| ||||| || || ||||| ||| | || ||
Sbjct 529 AGCACCTGAGAAGAAAATTCCTTCCACTGCTGCAAAAGCAATCAATCGCTCTGCGAAAGA 470
Query 14368 TGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCAT 14427
|| | ||||||| | ||||| || | ||| ||||| ||| | |
Sbjct 469 ATCTGAAT------CAATCCATTGAATTGCCCAGTCCGCTTTCTTTTTGATAGCAGGAAA 416
Query 14428 TGTTTCAATAGCATTAAATAAATGTTCCTTCTCT--TTAGTACTTGAAATGTATGTATCA 14485
||| | || || ||||||| | |||||| || || || | | || || ||
Sbjct 415 AACTTCTAATGCGTTGAATAAATCGGCTTTCTCTGCTTCGTCTTTTACA--TAAGTGTCG 358
Query 14486 ATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAA 14544
|| | ||| |||| |||| ||| || |||||||| || || |||||||| |||
Sbjct 357 ATTAACAAGGAATACGTTTCGCTGTGAATATTTTCCATCATGATTTGGAAACCATAGAAA 298
Query 14545 ACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAAC 14604
|| | ||||| | |||| || || ||| |||| || | ||||||||| ||
Sbjct 297 GAATTTCGCTTCAGCATATTGCACTTCATTTACAAAGTTTTCAGCAAGATTTTCATTTAC 238
Query 14605 TATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATT 14664
|| || || ||| || |||||||| || |||| ||| ||||||||||| || || ||
Sbjct 237 AATTCCGTCTGAAGCGGCGAAAAATGCTAAAATGTGTTTGATAAAGTATTGTTCGTCTTT 178
Query 14665 GCTGA---GTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCA 14721
| | || ||||| ||| |||||| | || | ||| | ||| || | |||||
Sbjct 177 ATTCAACTTGTTATTCCAGTCGTTTAAATCTTGTGACAAATCAATTTCTTCGGCAGTCCA 118
Query 14722 AAAACTAGC 14730
||||| ||
Sbjct 117 GAAACTCGC 109
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479177180281360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |