Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq44246 450 1e-121
seq103378 123 2e-23
seq152719 95.1 1e-14
seq59939 91.5 1e-13
>seq44246
Length=4029
Score = 450 bits (498), Expect = 1e-121
Identities = 1025/1523 (67%), Gaps = 40/1523 (3%)
Strand=Plus/Minus
Query 22430 GTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGT 22489
|||| || |||| |||||| |||| || | || ||||| || |||| ||| |||||
Sbjct 1786 GTCAGGTCCTTGAGCAGATGGGGGTTGACGATCTGGAACTCTCCTGACAGGACCCGGCGG 1727
Query 22490 TGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTC 22549
||| |||||| ||| | | |||| || || ||||| ||||| ||||| |||||
Sbjct 1726 GTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTG 1667
Query 22550 GAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTA 22609
|| || || |||||||| |||| ||| || ||| |||| ||||||||| | || ||
Sbjct 1666 GAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTC 1607
Query 22610 CTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTAT 22669
||| |||| | |||||||||||| |||| |||||| || |||||||| |||||
Sbjct 1606 TCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTGGGCGTC---TTCTCCCACATGTCGTAC 1550
Query 22670 TGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATC-GC 22728
|| | | ||| || | ||| ||| |||||||| ||||| || || | || ||
Sbjct 1549 TGGAGGATGCCCTTGCTGACGGGGGAGCC-TCGTACGTGTCGTAGGGGCC-CAGCTCGGC 1492
Query 22729 GGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTT 22788
||| ||||||||||| ||||||| ||| |||| || || ||||| ||||| | ||||
Sbjct 1491 GGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTT 1432
Query 22789 CAATTCGGC--GGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCC 22846
|| | || ||| || |||||| | || |||||||| | ||| ||||| |||
Sbjct 1431 CA--GCAGCTGGGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCC 1374
Query 22847 ATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGC 22906
| ||||| ||||| ||||||||||| | || | || ||| | |||||||||
Sbjct 1373 AGGCCCTGGACGCCGATACCGATCGGCCTGTGGCGCTTGTTGGACTGATCGGCCTCGGGC 1314
Query 22907 AAAGGATACCAATTCGAATCGAT-TGTTC-TGTTCAAGTTTCTGGTCACAAT---TTTCG 22961
| || || | || |||| | || || ||||| || |||| |||| || ||| |
Sbjct 1313 ACCGGGTAGAAGTT--AATCTCTATGATCTTGTTC-AGGTTCT--TCACGATCACTTTGG 1259
Query 22962 TTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT--TGTACAACAAACTTGTTGAC 23019
| | | ||||| ||| | ||| | | || || ||||||
Sbjct 1258 TCACAGACTCCAGTTTCTTGAAGTC--AAAAGTCCGCTCGGGGGTGACGTACATGTTGAG 1201
Query 23020 GGCGATCGAGGCAAGATTGCATACGGCCACC---TCGTCTTTGGACGTGTACTCTACAAT 23076
||||| ||||| ||||| || || || ||| ||| | |||| ||| || || ||
Sbjct 1200 AGCGATGGAGGCCAGATTACACACAGCGACCTCATCGCCACTGGA---GTATTCAACGAT 1144
Query 23077 TTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATT 23136
||| || || || ||||| ||||| || || |||| || ||||||||| || | ||
Sbjct 1143 TTCCGTGCAGAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTT 1084
Query 23137 GCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGC 23196
||| | || ||||| ||||||||||||||||||| ||| ||| ||||||||||| ||
Sbjct 1083 GCAGGCGTCTTTGTACAGCATGTACGGCGTGCCCGACTCCGTCTGGGACTCGATGATGGC 1024
Query 23197 TCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTG 23256
|||||| |||||| | || ||| | || ||| || ||| || |
Sbjct 1023 GTGCCACACCTGCTGAGCCTTCACCACACGCTTGACCCGGCCCTCCCGCTCATATTGGGT 964
Query 23257 GTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCC-GGGCGATTGCATCGGAC 23315
||| | | ||||| || | || | || ||| |||| || |||| | || | ||||
Sbjct 963 GTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCTCTCGC-TGGGAC 905
Query 23316 ACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATA 23375
|||| ||| ||| || | || || | |||| || || || || ||||| |
Sbjct 904 ACATCAGAGACCAGTCCTGGTTGCTCTCCACCCTCTTCATGAACAGGTCGGGGATCCACA 845
Query 23376 GAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCA 23435
||||||| || || | ||| | | |||||| || || |||||||| |||| ||||
Sbjct 844 AGCCGTAGAAGAGATCTCTGGCTCTCTGCTCCTCCTTCCCCGTGTTCTTCTTCAGCTCCA 785
Query 23436 AAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495
||||| |||||||| ||||||||||| ||||| | ||| || ||||| |||| ||
Sbjct 784 GGAAGTCGAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGTCGCT 725
Query 23496 TATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGA 23555
| ||||||||||| ||||| || || || ||||||||||| || || ||||| || || |
Sbjct 724 TGTTGCCGCCCTGGTCGACATAGCGTGCTGTGTTGTTGTAGACCCTCAGCATGGGGACCA 665
Query 23556 GACCGTTGGACGCGCCGCCTACGCCCGCCA---CACTCGAACCTTTTGCTCGAACGTTGT 23612
| |||||||| |||| ||| || | ||| || | | ||| | | |
Sbjct 664 GCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTC---CCGGTGGATCGGATGCAGC 608
Query 23613 GAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGT 23672
||| | ||| || ||||| |||| || || || | || || || ||||| ||||
Sbjct 607 TGACGGCCACACCGATTCCTCCTGCCGACTTGGAGATGAGTGCACACTGCTTCAGCGTGT 548
Query 23673 CGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCG 23732
|||||||||||||||||||||| || || | | || || ||| || || | || |
Sbjct 547 CGTAGATGCCCTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGAGAGCTGAG 488
Query 23733 CTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACA 23792
| || | || ||| || || ||| |||||| || || | | ||| |
Sbjct 487 GCCGGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCCGAGA 428
Query 23793 TTAGATTGTACGTGTCGATGGCGGCATCAATGTCC-TCTCCGTGTATACCGATGGCGACG 23851
|| ||||| || ||||||||||| || || ||| ||| ||| || |||| | ||
Sbjct 427 GCAGGTTGTAGGTCTCGATGGCGGCGTCGATATCCGTCT-TGTGGATTCCGACCGACACC 369
Query 23852 CGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAA 23911
| ||| | ||||| || || | ||| || |||||| || || | ||| || ||
Sbjct 368 CTCATGAGCATGTGCTGCGGCCGCTCCGCCACTTTGCCGTTGATCTTCAGCAGGTAGGAT 309
Query 23912 CGTTGCATCGTTTTAAATCCAAA 23934
|| | || ||| || || || ||
Sbjct 308 CGCTCCAGCGTCTTGAAGCCGAA 286
>seq103378
Length=1867
Score = 123 bits (136), Expect = 2e-23
Identities = 121/156 (78%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399
|||| || ||| |||| || || || || ||||| || ||| ||||||| || | ||| |
Sbjct 1337 TTTCCACTCGTTTCATGAAGAGGTCTGGGATCCACAGGGCGAAGAACAGGTCTCTGGCCC 1278
Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459
| ||||||||| || |||||||| |||| || || || || ||||||||| |||||
Sbjct 1277 TCTGCTCCTCTTTACCTGTGTTCTTCTTCATCTCTAAGAACTCAAACACGTCCAAATGCC 1218
Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495
||||||| ||||| ||||| || || || |||||||
Sbjct 1217 ACGGCTCCAGGTACACGGCGAAGGCCCCGGGTCTCT 1182
Score = 118 bits (130), Expect = 9e-22
Identities = 121/158 (77%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106
|||||| |||||| |||||||| || || || || || |||||||| | || || ||
Sbjct 1801 CACCTCATCTTTGCTGGTGTACTCCACTATCTCTGTGCACAGATTGCTGGATTTGATGGT 1742
Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166
|||| ||| ||||||||| || | ||||| | |||||||||||||||||||||||
Sbjct 1741 TCCCAGATTCTGCTGGTTGCTCTTCCCGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGT 1682
Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204
||||| || ||| ||||||||||| || |||||
Sbjct 1681 ACCCGTTTCAGTCTGTGACTCGATGATGGCGTACCACA 1644
>seq152719
Length=2073
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| || || || ||||| ||||| || || || ||||| | || ||||||||
Sbjct 729 AAGATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACTATCACTCTGGAGGTTGAACCC 670
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
||||| | || | || ||| | || ||| ||||| ||| | || || ||
Sbjct 669 AGCGACACCATTGAGAATGTAAAAGCTAAGATCCAGGATAAGGAGGGCATCCCTCCTGAT 610
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
|||||| | || || || || ||||| ||| ||||||| | || ||| ||||||
Sbjct 609 CAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCATGTCAGATTAT 550
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| || |||||||| || | ||||| || || | |||| || ||||
Sbjct 549 AACATCCAGAAAGAATCCACCATCCATCTTGTGCTGCGCTTGAGAGGAGGTA 498
>seq59939
Length=800
Score = 91.5 bits (100), Expect = 1e-13
Identities = 116/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
|||||||||| || || || ||||| || || ||||| || |||||| |||| ||||| |
Sbjct 170 CAAACATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTTGAGC 111
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
| |||| |||||| ||||| | || ||||||||||||| | || || |
Sbjct 110 CTAGTGACACAATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAG 51
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
| |||||| | || || || || || || ||| |||||||
Sbjct 50 ATCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGA 11
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 442838260815840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |