Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq44246 450 1e-121 seq103378 123 2e-23 seq152719 95.1 1e-14 seq59939 91.5 1e-13 >seq44246 Length=4029 Score = 450 bits (498), Expect = 1e-121 Identities = 1025/1523 (67%), Gaps = 40/1523 (3%) Strand=Plus/Minus Query 22430 GTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGT 22489 |||| || |||| |||||| |||| || | || ||||| || |||| ||| ||||| Sbjct 1786 GTCAGGTCCTTGAGCAGATGGGGGTTGACGATCTGGAACTCTCCTGACAGGACCCGGCGG 1727 Query 22490 TGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTC 22549 ||| |||||| ||| | | |||| || || ||||| ||||| ||||| ||||| Sbjct 1726 GTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTG 1667 Query 22550 GAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTA 22609 || || || |||||||| |||| ||| || ||| |||| ||||||||| | || || Sbjct 1666 GAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTC 1607 Query 22610 CTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTAT 22669 ||| |||| | |||||||||||| |||| |||||| || |||||||| ||||| Sbjct 1606 TCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTGGGCGTC---TTCTCCCACATGTCGTAC 1550 Query 22670 TGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATC-GC 22728 || | | ||| || | ||| ||| |||||||| ||||| || || | || || Sbjct 1549 TGGAGGATGCCCTTGCTGACGGGGGAGCC-TCGTACGTGTCGTAGGGGCC-CAGCTCGGC 1492 Query 22729 GGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTT 22788 ||| ||||||||||| ||||||| ||| |||| || || ||||| ||||| | |||| Sbjct 1491 GGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTT 1432 Query 22789 CAATTCGGC--GGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCC 22846 || | || ||| || |||||| | || |||||||| | ||| ||||| ||| Sbjct 1431 CA--GCAGCTGGGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCC 1374 Query 22847 ATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGC 22906 | ||||| ||||| ||||||||||| | || | || ||| | ||||||||| Sbjct 1373 AGGCCCTGGACGCCGATACCGATCGGCCTGTGGCGCTTGTTGGACTGATCGGCCTCGGGC 1314 Query 22907 AAAGGATACCAATTCGAATCGAT-TGTTC-TGTTCAAGTTTCTGGTCACAAT---TTTCG 22961 | || || | || |||| | || || ||||| || |||| |||| || ||| | Sbjct 1313 ACCGGGTAGAAGTT--AATCTCTATGATCTTGTTC-AGGTTCT--TCACGATCACTTTGG 1259 Query 22962 TTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT--TGTACAACAAACTTGTTGAC 23019 | | | ||||| ||| | ||| | | || || |||||| Sbjct 1258 TCACAGACTCCAGTTTCTTGAAGTC--AAAAGTCCGCTCGGGGGTGACGTACATGTTGAG 1201 Query 23020 GGCGATCGAGGCAAGATTGCATACGGCCACC---TCGTCTTTGGACGTGTACTCTACAAT 23076 ||||| ||||| ||||| || || || ||| ||| | |||| ||| || || || Sbjct 1200 AGCGATGGAGGCCAGATTACACACAGCGACCTCATCGCCACTGGA---GTATTCAACGAT 1144 Query 23077 TTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATT 23136 ||| || || || ||||| ||||| || || |||| || ||||||||| || | || Sbjct 1143 TTCCGTGCAGAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTT 1084 Query 23137 GCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 ||| | || ||||| ||||||||||||||||||| ||| ||| ||||||||||| || Sbjct 1083 GCAGGCGTCTTTGTACAGCATGTACGGCGTGCCCGACTCCGTCTGGGACTCGATGATGGC 1024 Query 23197 TCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTG 23256 |||||| |||||| | || ||| | || ||| || ||| || | Sbjct 1023 GTGCCACACCTGCTGAGCCTTCACCACACGCTTGACCCGGCCCTCCCGCTCATATTGGGT 964 Query 23257 GTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCC-GGGCGATTGCATCGGAC 23315 ||| | | ||||| || | || | || ||| |||| || |||| | || | |||| Sbjct 963 GTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCTCTCGC-TGGGAC 905 Query 23316 ACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATA 23375 |||| ||| ||| || | || || | |||| || || || || ||||| | Sbjct 904 ACATCAGAGACCAGTCCTGGTTGCTCTCCACCCTCTTCATGAACAGGTCGGGGATCCACA 845 Query 23376 GAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCA 23435 ||||||| || || | ||| | | |||||| || || |||||||| |||| |||| Sbjct 844 AGCCGTAGAAGAGATCTCTGGCTCTCTGCTCCTCCTTCCCCGTGTTCTTCTTCAGCTCCA 785 Query 23436 AAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||| |||||||| ||||||||||| ||||| | ||| || ||||| |||| || Sbjct 784 GGAAGTCGAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGTCGCT 725 Query 23496 TATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGA 23555 | ||||||||||| ||||| || || || ||||||||||| || || ||||| || || | Sbjct 724 TGTTGCCGCCCTGGTCGACATAGCGTGCTGTGTTGTTGTAGACCCTCAGCATGGGGACCA 665 Query 23556 GACCGTTGGACGCGCCGCCTACGCCCGCCA---CACTCGAACCTTTTGCTCGAACGTTGT 23612 | |||||||| |||| ||| || | ||| || | | ||| | | | Sbjct 664 GCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTC---CCGGTGGATCGGATGCAGC 608 Query 23613 GAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGT 23672 ||| | ||| || ||||| |||| || || || | || || || ||||| |||| Sbjct 607 TGACGGCCACACCGATTCCTCCTGCCGACTTGGAGATGAGTGCACACTGCTTCAGCGTGT 548 Query 23673 CGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCG 23732 |||||||||||||||||||||| || || | | || || ||| || || | || | Sbjct 547 CGTAGATGCCCTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGAGAGCTGAG 488 Query 23733 CTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACA 23792 | || | || ||| || || ||| |||||| || || | | ||| | Sbjct 487 GCCGGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCCGAGA 428 Query 23793 TTAGATTGTACGTGTCGATGGCGGCATCAATGTCC-TCTCCGTGTATACCGATGGCGACG 23851 || ||||| || ||||||||||| || || ||| ||| ||| || |||| | || Sbjct 427 GCAGGTTGTAGGTCTCGATGGCGGCGTCGATATCCGTCT-TGTGGATTCCGACCGACACC 369 Query 23852 CGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAA 23911 | ||| | ||||| || || | ||| || |||||| || || | ||| || || Sbjct 368 CTCATGAGCATGTGCTGCGGCCGCTCCGCCACTTTGCCGTTGATCTTCAGCAGGTAGGAT 309 Query 23912 CGTTGCATCGTTTTAAATCCAAA 23934 || | || ||| || || || || Sbjct 308 CGCTCCAGCGTCTTGAAGCCGAA 286 >seq103378 Length=1867 Score = 123 bits (136), Expect = 2e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || ||| |||| || || || || ||||| || ||| ||||||| || | ||| | Sbjct 1337 TTTCCACTCGTTTCATGAAGAGGTCTGGGATCCACAGGGCGAAGAACAGGTCTCTGGCCC 1278 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | ||||||||| || |||||||| |||| || || || || ||||||||| ||||| Sbjct 1277 TCTGCTCCTCTTTACCTGTGTTCTTCTTCATCTCTAAGAACTCAAACACGTCCAAATGCC 1218 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| ||||| || || || ||||||| Sbjct 1217 ACGGCTCCAGGTACACGGCGAAGGCCCCGGGTCTCT 1182 Score = 118 bits (130), Expect = 9e-22 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||| |||||| |||||||| || || || || || |||||||| | || || || Sbjct 1801 CACCTCATCTTTGCTGGTGTACTCCACTATCTCTGTGCACAGATTGCTGGATTTGATGGT 1742 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 |||| ||| ||||||||| || | ||||| | ||||||||||||||||||||||| Sbjct 1741 TCCCAGATTCTGCTGGTTGCTCTTCCCGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGT 1682 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 ||||| || ||| ||||||||||| || ||||| Sbjct 1681 ACCCGTTTCAGTCTGTGACTCGATGATGGCGTACCACA 1644 >seq152719 Length=2073 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || ||||| ||||| || || || ||||| | || |||||||| Sbjct 729 AAGATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACTATCACTCTGGAGGTTGAACCC 670 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| | || | || ||| | || ||| ||||| ||| | || || || Sbjct 669 AGCGACACCATTGAGAATGTAAAAGCTAAGATCCAGGATAAGGAGGGCATCCCTCCTGAT 610 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || || || ||||| ||| ||||||| | || ||| |||||| Sbjct 609 CAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCATGTCAGATTAT 550 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || |||||||| || | ||||| || || | |||| || |||| Sbjct 549 AACATCCAGAAAGAATCCACCATCCATCTTGTGCTGCGCTTGAGAGGAGGTA 498 >seq59939 Length=800 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || || || ||||| || || ||||| || |||||| |||| ||||| | Sbjct 170 CAAACATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTTGAGC 111 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | |||| |||||| ||||| | || ||||||||||||| | || || | Sbjct 110 CTAGTGACACAATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAG 51 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 | |||||| | || || || || || || ||| ||||||| Sbjct 50 ATCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGA 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 442838260815840