Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq44246 407 2e-108
seq28532 102 1e-16
seq103378 98.7 1e-15
seq231358 96.9 4e-15
>seq44246
Length=4029
Score = 407 bits (450), Expect = 2e-108
Identities = 1211/1861 (65%), Gaps = 24/1861 (1%)
Strand=Plus/Minus
Query 62294 CTGAATGGATCCACCATCTACC-ATAATCCTATTCTTGATCTCATCATTCCATAATTTTC 62352
|||||||||||| | |||| || | | ||||| ||||| || ||| | ||
Sbjct 1850 CTGAATGGATCCGTTGT-TACCGATCAGCTGGTTCTTCATCTCCTCGCCCCACAGCCCTC 1792
Query 62353 TCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTC 62412
|||| || | | | || ||||| ||||| || | ||||| ||||| |||| || |
Sbjct 1791 TCTCCGTCAGGTCCTTGAGCAGATGGGGGTTGACGATCTGGAACTCTCCTGACAGGACCC 1732
Query 62413 TCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAG 62472
|| ||||| || || ||||| || | || | ||||| || || |||| || || |
Sbjct 1731 GGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGG 1672
Query 62473 CAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGA 62532
| || || || || ||||| || |||| || | || || || | |||| | ||
Sbjct 1671 CGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGA 1612
Query 62533 TTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGG-------TACAACANNNNNN 62585
| || || || || | | ||| | ||| || || | || | | |||
Sbjct 1611 TCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTGGGCGTCTTCTCCCACATGTCG- 1553
Query 62586 NNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCT 62645
|| || || || || || ||| || || ||| | || || || || || ||
Sbjct 1552 ------TACTGGAGGATGCCCTTGCTGACGGGGGAGCCT-CGTACGTGTCGTAGGGGCCC 1500
Query 62646 TCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATC 62705
|| | || |||| || || ||||| | || |||| || ||||| |||||||||
Sbjct 1499 AGCTCGGCGGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATC 1440
Query 62706 TTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCG 62765
| | || || || || || ||||| ||||| || ||| | || || || |||
Sbjct 1439 TGGATGTTCAGCAGCTGGGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCG 1380
Query 62766 TCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCT 62825
|| || | || || || || |||||||| || || || | ||| || || || ||
Sbjct 1379 TCGGCCAGGCCCTGGACGCCGATACCGATCGGCCTGTGGCGCTTGTTGGACTGATCGGCC 1320
Query 62826 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTG 62885
|| || | || || | ||||| ||||| || || || || || | || || ||||||
Sbjct 1319 TCGGGCACCGGGTAGAAGTTAATCTCTATGATCTTGTTCAGGTTCTTCACGATCACTTTG 1260
Query 62886 ACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAAT 62942
|||| || |||||| || ||||| || || | || ||||||| |
Sbjct 1259 GTCACAGACTCCAGTTTCTTGAAGTCAAAAGTCCGCTCGGGGGTGACGTACATGTTGAGA 1200
Query 62943 GCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 63002
|| | || |||||||||||||| || ||||||| || | |||| | || ||
Sbjct 1199 GCGATGGAGGCCAGATTACACACAGCGACCTCATCGCCACTGGAGTATTCAACGATTTCC 1140
Query 63003 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63062
||||| || || || |||||||| ||||| | || || || || ||||| |||| ||
Sbjct 1139 GTGCAGAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAG 1080
Query 63063 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63122
|| || || || || ||| | || || || | || |||| || || || || || | |
Sbjct 1079 GCGTCTTTGTACAGCATGTACGGCGTGCCCGACTCCGTCTGGGACTCGATGATGGCGTGC 1020
Query 63123 CAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATAC 63182
|| || ||||||| | | | ||| | | || | || ||| | || ||
Sbjct 1019 CACACCTGCTGAGCCTTCACCACACGCTTGACCCGGCCCTCCCGCTCATATTGGGTGTAG 960
Query 63183 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATC 63242
| || ||||| || ||||| | ||||| | || | || |||||||||
Sbjct 959 AGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCTCTCGCTGGGACACATC 900
Query 63243 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63302
| ||||| || || || ||| | ||||| || || || || ||||| | |||
Sbjct 899 AGAGACCAGTCCTGGTTGCTCTCCACCCTCTTCATGAACAGGTCGGGGATCCACA-AGCC 841
Query 63303 ATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63361
|| || |||||||| | ||| || ||||| || || || ||||| || || || |||||
Sbjct 840 GTAGAAGAGATCTCTGGCTCTCTGCTCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAA 781
Query 63362 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63421
| | | ||| | |||||||| |||| ||| ||||| | | || || || |||||
Sbjct 780 GTCGAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGTCGCTTGTT 721
Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481
|| ||||| || | || | || ||||| || || || |||| ||| || | | ||
Sbjct 720 GCCGCCCTGGTCGACATAGCGTGCTGTGTTGTTGTAGACCCTCAGCATGGGGACCAGCCC 661
Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541
||| || | || ||||| |||| ||| |||| || ||| || || || | |
Sbjct 660 GTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTGGATCGGATGCAGCTGACGGC 601
Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601
| ||| ||||| |||||| || ||||| | ||| || | || | |||||| |||||
Sbjct 600 CACACCGATTCCTCCTGCCGACTTGGAGATGAGTGCACACTGCTTCAGCGTGTCGTAGAT 541
Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGT 63661
||| || ||||| || || ||||| | || || || ||||| || | || | || |
Sbjct 540 GCCCTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGAGAGCTGAGGCCGGTT 481
Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721
||||| || || || | || || || ||||| || ||||| || || || || || ||
Sbjct 480 GGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCCGAGAGCAGGTT 421
Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781
||| ||||| || || | ||| |||||| | || ||||| || | || | ||| |
Sbjct 420 GTAGGTCTCGATGGCGGCGTCGATATCCGTCTTGTGGATTCCGACCGACACCCTCATGAG 361
Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841
||||||||| || | || | | |||| ||| || |||| || ||||||| ||||
Sbjct 360 CATGTGCTGCGGCCGCTCCGCCACTTTGCCGTTGATCTTCAGCAGGTAGGATCGCTCCAG 301
Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901
|| || || || || ||||||| || || |||| ||| | || || |||| |||||
Sbjct 300 CGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGAAGATGATGGCCGAGTTGAG 241
Query 63902 CTTATCCTTATATTTGTTAACTATATCCATGGTAATACTT-GAAATAATCGGAGAATGTT 63960
||||| | | ||| || || | ||| | ||| || || || || || ||
Sbjct 240 GCGGTCCTTGTGGGCGAGAACGATGTCGAGGGT-CTCCTTGGAGATCATGGGGGAGTGGC 182
Query 63961 TCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 64020
| || ||| || | ||| || | | ||||||||||| ||||| || | || |
Sbjct 181 GTCTGTTCAGAGGGTTGATGTAGCTGTACAGGTCCTCCATCACCTCACTGAAAACCTTCT 122
Query 64021 ttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGAT 64080
| || |||||||| || || || | ||| || | |||||| || ||||| || ||||| |
Sbjct 121 TCGTCTCCTTGTGCAGGTTGGAGACGGCGATCCGGGCGGCGAGGATGGCGTAGTCCGGGT 62
Query 64081 GTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 64140
||| || || ||||| | || || || ||||| ||||||| || || || || |
Sbjct 61 GTTTGGTGGTGAGGGTGGCGGTGATCTCTGCAGCCAGGGTGTCCAGCTCCACGGTGGTGA 2
Query 64141 C 64141
|
Sbjct 1 C 1
>seq28532
Length=8763
Score = 102 bits (112), Expect = 1e-16
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| || || ||||| | || || || || || || |||||||||| ||| | ||| |
Sbjct 1945 CCTCATCCCTGCTAATCAGCTCATTGGAGAAGGTAAGCCCGGGCATTAAGCCTCTCTTCT 1886
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| |||||||| |||| |||||| || ||||| ||||||||||| || || |||||||| |
Sbjct 1885 TCAGCCAAAAGATGGCAGCGAACGAACCGGAGAAGAAGATTCCCTCCACGGCAGCAAAAG 1826
Query 33724 C 33724
|
Sbjct 1825 C 1825
>seq103378
Length=1867
Score = 98.7 bits (108), Expect = 1e-15
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722
|| || ||||| || | ||||| || ||||| || ||||| ||||| || || | |||
Sbjct 579 GTGCCGGCATTGAACAGTGTAGGTGAGGCGTGGGTGAACCACTTTTCCGACAGCAAGTTG 520
Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782
||||||||||| |||| || || || | || ||||| || || || || | ||||| |
Sbjct 519 TACGTCTCAATGGCTGCATCGATGTCTCTTTTGTGAATCCCGACGGCCACTCTCATTAGC 460
Query 63783 ATGTGCTGAGGTCTTTCAACAA 63804
|||||||| ||||| ||| |||
Sbjct 459 ATGTGCTGGGGTCTCTCAGCAA 438
>seq231358
Length=2322
Score = 96.9 bits (106), Expect = 4e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||||||||| || || | || || || || || || |||||||| ||||| | ||| |
Sbjct 628 CCTCGTCTCTGCTGATGAGCTCATTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 687
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||| || |||| |||||| || || || ||||||||||| || || || || ||||
Sbjct 688 TCAGCCAGAAGATGGCAGCGAAGGACCCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGG 747
Query 33724 CAATAAGTCTCTCTCC 33739
| | | || ||||||
Sbjct 748 CCACCACTCGCTCTCC 763
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 625680469894560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |