Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq44246 407 2e-108 seq28532 102 1e-16 seq103378 98.7 1e-15 seq231358 96.9 4e-15 >seq44246 Length=4029 Score = 407 bits (450), Expect = 2e-108 Identities = 1211/1861 (65%), Gaps = 24/1861 (1%) Strand=Plus/Minus Query 62294 CTGAATGGATCCACCATCTACC-ATAATCCTATTCTTGATCTCATCATTCCATAATTTTC 62352 |||||||||||| | |||| || | | ||||| ||||| || ||| | || Sbjct 1850 CTGAATGGATCCGTTGT-TACCGATCAGCTGGTTCTTCATCTCCTCGCCCCACAGCCCTC 1792 Query 62353 TCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTC 62412 |||| || | | | || ||||| ||||| || | ||||| ||||| |||| || | Sbjct 1791 TCTCCGTCAGGTCCTTGAGCAGATGGGGGTTGACGATCTGGAACTCTCCTGACAGGACCC 1732 Query 62413 TCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAG 62472 || ||||| || || ||||| || | || | ||||| || || |||| || || | Sbjct 1731 GGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGG 1672 Query 62473 CAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGA 62532 | || || || || ||||| || |||| || | || || || | |||| | || Sbjct 1671 CGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGA 1612 Query 62533 TTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGG-------TACAACANNNNNN 62585 | || || || || | | ||| | ||| || || | || | | ||| Sbjct 1611 TCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTGGGCGTCTTCTCCCACATGTCG- 1553 Query 62586 NNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCT 62645 || || || || || || ||| || || ||| | || || || || || || Sbjct 1552 ------TACTGGAGGATGCCCTTGCTGACGGGGGAGCCT-CGTACGTGTCGTAGGGGCCC 1500 Query 62646 TCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATC 62705 || | || |||| || || ||||| | || |||| || ||||| ||||||||| Sbjct 1499 AGCTCGGCGGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATC 1440 Query 62706 TTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCG 62765 | | || || || || || ||||| ||||| || ||| | || || || ||| Sbjct 1439 TGGATGTTCAGCAGCTGGGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCG 1380 Query 62766 TCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCT 62825 || || | || || || || |||||||| || || || | ||| || || || || Sbjct 1379 TCGGCCAGGCCCTGGACGCCGATACCGATCGGCCTGTGGCGCTTGTTGGACTGATCGGCC 1320 Query 62826 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTG 62885 || || | || || | ||||| ||||| || || || || || | || || |||||| Sbjct 1319 TCGGGCACCGGGTAGAAGTTAATCTCTATGATCTTGTTCAGGTTCTTCACGATCACTTTG 1260 Query 62886 ACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAAT 62942 |||| || |||||| || ||||| || || | || ||||||| | Sbjct 1259 GTCACAGACTCCAGTTTCTTGAAGTCAAAAGTCCGCTCGGGGGTGACGTACATGTTGAGA 1200 Query 62943 GCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 63002 || | || |||||||||||||| || ||||||| || | |||| | || || Sbjct 1199 GCGATGGAGGCCAGATTACACACAGCGACCTCATCGCCACTGGAGTATTCAACGATTTCC 1140 Query 63003 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63062 ||||| || || || |||||||| ||||| | || || || || ||||| |||| || Sbjct 1139 GTGCAGAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAG 1080 Query 63063 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63122 || || || || || ||| | || || || | || |||| || || || || || | | Sbjct 1079 GCGTCTTTGTACAGCATGTACGGCGTGCCCGACTCCGTCTGGGACTCGATGATGGCGTGC 1020 Query 63123 CAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATAC 63182 || || ||||||| | | | ||| | | || | || ||| | || || Sbjct 1019 CACACCTGCTGAGCCTTCACCACACGCTTGACCCGGCCCTCCCGCTCATATTGGGTGTAG 960 Query 63183 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATC 63242 | || ||||| || ||||| | ||||| | || | || ||||||||| Sbjct 959 AGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCTCTCGCTGGGACACATC 900 Query 63243 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63302 | ||||| || || || ||| | ||||| || || || || ||||| | ||| Sbjct 899 AGAGACCAGTCCTGGTTGCTCTCCACCCTCTTCATGAACAGGTCGGGGATCCACA-AGCC 841 Query 63303 ATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63361 || || |||||||| | ||| || ||||| || || || ||||| || || || ||||| Sbjct 840 GTAGAAGAGATCTCTGGCTCTCTGCTCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAA 781 Query 63362 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63421 | | | ||| | |||||||| |||| ||| ||||| | | || || || ||||| Sbjct 780 GTCGAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGTCGCTTGTT 721 Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 || ||||| || | || | || ||||| || || || |||| ||| || | | || Sbjct 720 GCCGCCCTGGTCGACATAGCGTGCTGTGTTGTTGTAGACCCTCAGCATGGGGACCAGCCC 661 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 ||| || | || ||||| |||| ||| |||| || ||| || || || | | Sbjct 660 GTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTGGATCGGATGCAGCTGACGGC 601 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| ||||| |||||| || ||||| | ||| || | || | |||||| ||||| Sbjct 600 CACACCGATTCCTCCTGCCGACTTGGAGATGAGTGCACACTGCTTCAGCGTGTCGTAGAT 541 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGT 63661 ||| || ||||| || || ||||| | || || || ||||| || | || | || | Sbjct 540 GCCCTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGAGAGCTGAGGCCGGTT 481 Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 ||||| || || || | || || || ||||| || ||||| || || || || || || Sbjct 480 GGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCCGAGAGCAGGTT 421 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||| ||||| || || | ||| |||||| | || ||||| || | || | ||| | Sbjct 420 GTAGGTCTCGATGGCGGCGTCGATATCCGTCTTGTGGATTCCGACCGACACCCTCATGAG 361 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 ||||||||| || | || | | |||| ||| || |||| || ||||||| |||| Sbjct 360 CATGTGCTGCGGCCGCTCCGCCACTTTGCCGTTGATCTTCAGCAGGTAGGATCGCTCCAG 301 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901 || || || || || ||||||| || || |||| ||| | || || |||| ||||| Sbjct 300 CGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGAAGATGATGGCCGAGTTGAG 241 Query 63902 CTTATCCTTATATTTGTTAACTATATCCATGGTAATACTT-GAAATAATCGGAGAATGTT 63960 ||||| | | ||| || || | ||| | ||| || || || || || || Sbjct 240 GCGGTCCTTGTGGGCGAGAACGATGTCGAGGGT-CTCCTTGGAGATCATGGGGGAGTGGC 182 Query 63961 TCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 64020 | || ||| || | ||| || | | ||||||||||| ||||| || | || | Sbjct 181 GTCTGTTCAGAGGGTTGATGTAGCTGTACAGGTCCTCCATCACCTCACTGAAAACCTTCT 122 Query 64021 ttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGAT 64080 | || |||||||| || || || | ||| || | |||||| || ||||| || ||||| | Sbjct 121 TCGTCTCCTTGTGCAGGTTGGAGACGGCGATCCGGGCGGCGAGGATGGCGTAGTCCGGGT 62 Query 64081 GTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 64140 ||| || || ||||| | || || || ||||| ||||||| || || || || | Sbjct 61 GTTTGGTGGTGAGGGTGGCGGTGATCTCTGCAGCCAGGGTGTCCAGCTCCACGGTGGTGA 2 Query 64141 C 64141 | Sbjct 1 C 1 >seq28532 Length=8763 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| || || ||||| | || || || || || || |||||||||| ||| | ||| | Sbjct 1945 CCTCATCCCTGCTAATCAGCTCATTGGAGAAGGTAAGCCCGGGCATTAAGCCTCTCTTCT 1886 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||||| |||| |||||| || ||||| ||||||||||| || || |||||||| | Sbjct 1885 TCAGCCAAAAGATGGCAGCGAACGAACCGGAGAAGAAGATTCCCTCCACGGCAGCAAAAG 1826 Query 33724 C 33724 | Sbjct 1825 C 1825 >seq103378 Length=1867 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || ||||| || | ||||| || ||||| || ||||| ||||| || || | ||| Sbjct 579 GTGCCGGCATTGAACAGTGTAGGTGAGGCGTGGGTGAACCACTTTTCCGACAGCAAGTTG 520 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 ||||||||||| |||| || || || | || ||||| || || || || | ||||| | Sbjct 519 TACGTCTCAATGGCTGCATCGATGTCTCTTTTGTGAATCCCGACGGCCACTCTCATTAGC 460 Query 63783 ATGTGCTGAGGTCTTTCAACAA 63804 |||||||| ||||| ||| ||| Sbjct 459 ATGTGCTGGGGTCTCTCAGCAA 438 >seq231358 Length=2322 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | || || || || || || |||||||| ||||| | ||| | Sbjct 628 CCTCGTCTCTGCTGATGAGCTCATTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 687 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||| |||||| || || || ||||||||||| || || || || |||| Sbjct 688 TCAGCCAGAAGATGGCAGCGAAGGACCCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGG 747 Query 33724 CAATAAGTCTCTCTCC 33739 | | | || |||||| Sbjct 748 CCACCACTCGCTCTCC 763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 625680469894560