Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq496362 237 1e-57
seq231358 93.3 4e-14
seq28532 86.0 6e-12
>seq496362
Length=882
Score = 237 bits (262), Expect = 1e-57
Identities = 411/586 (70%), Gaps = 16/586 (3%)
Strand=Plus/Minus
Query 11633 GCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCG 11692
|| |||||||| || | ||||||||| | | || | ||| || || ||||| |||||
Sbjct 630 GCGAAATCACAGTGAACACCTTCGTCACGAGAAATCAATTCGTTTGAGAATGTCAATCCT 571
Query 11693 GGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATT 11752
|||||||| ||||||||||| | ||| || || | | ||| | ||| || ||||| |||
Sbjct 570 GGCATCAAACCTCGTTTTTTCAACCAGAAAATGGAACAAAAAGCACCTGAGAAGAAAATT 511
Query 11753 CCCTCCACAGCTGCAAATGCTACTACTCTTTCTCC-ATATACCTTGTTGCTAGATATCCA 11811
|| ||||| |||||||| || | | || ||| | | | | || | | ||||
Sbjct 510 CCTTCCACTGCTGCAAAAGCAATCAATCGCTCTGCGAAAGAATCTGAATCAA----TCCA 455
Query 11812 TTTTCTGGCCCAATCAGCTTTCTTTTTTAC-GCATTCCATTGTTTCTATAGCGTTAAATA 11870
|| | ||||| || ||||||||||| | ||| | || ||| ||||| ||||
Sbjct 454 TTGAATTGCCCAGTCCGCTTTCTTTTTGATAGCAGGAAAAACTT-CTAATGCGTTGAATA 396
Query 11871 AATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTG 11930
||| ||| ||| | ||| ||||||| || || ||||| || |||| ||||
Sbjct 395 AATCGGCTTTCTCTGCTTCGTCTTTTACATAAGTGTCGATTAACAAGGAATACGTTTCGC 336
Query 11931 AATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGT-GCCTCTGAACACTGT 11989
|||||||||||||| ||||| || ||||||||| | | || || | | | ||
Sbjct 335 TGTGAATATTTTCCATCATGATTTGGAAACCATAGAAAGAATTTCGCTTCAGCATATTGC 276
Query 11990 ACATCCACATA-AAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAA 12048
|| || | || ||| |||| || | ||| ||||||||||| || || || || ||
Sbjct 275 ACTTC-ATTTACAAAGTTTTCAGCAAGATTTTCATTTACAATTCCGTCTGAAGCGGCGAA 217
Query 12049 AAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAA---TTTATCCCAATC 12105
|||||||| || ||||| |||||||||| |||||||||| | || |||| ||| ||
Sbjct 216 AAATGCTAAAATGTGTTTGATAAAGTATTGTTCGTCTTTATTCAACTTGTTATTCCAGTC 157
Query 12106 ATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTG-TT 12164
| |||||||| ||| ||||| | |||||| | ||||| ||||| || | || | ||
Sbjct 156 GTTTAAATCTTGTGACAAATCAATTTCTTCGGCAGTCCAGAAACTCGCTCC--ATGGATT 99
Query 12165 TATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210
|||| | || ||| ||||| || | ||| || || ||||| || ||
Sbjct 98 TATAAAATTCCCAAATATCTTGGTGCTTGATCGGAAAAATGACAAA 53
>seq231358
Length=2322
Score = 93.3 bits (102), Expect = 4e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|||||||| || || || ||||| || || || | |||||||||| |||| || ||
Sbjct 630 TCGTCTCTGCTGATGAGCTCATTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTC 689
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| || || ||||| || || ||||| ||||| ||||||||||| || || || ||
Sbjct 690 AGCCAGAAGATGGCAGCGAAGGACCCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGGCC 749
Query 11774 ACTACTCTTTCTCC 11787
|| |||| |||||
Sbjct 750 ACCACTCGCTCTCC 763
>seq28532
Length=8763
Score = 86.0 bits (94), Expect = 6e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|| || || || || || ||||| || || || | |||||||| || |||| || ||
Sbjct 1943 TCATCCCTGCTAATCAGCTCATTGGAGAAGGTAAGCCCGGGCATTAAGCCTCTCTTCTTC 1884
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| |||||| || ||||| || ||||| || ||||| ||||||||||| || ||||| ||
Sbjct 1883 AGCCAAAAGATGGCAGCGAACGAACCGGAGAAGAAGATTCCCTCCACGGCAGCAAAAGCC 1824
Query 11774 AC 11775
||
Sbjct 1823 AC 1822
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 465447166006880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |