Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq496362 237 1e-57 seq231358 93.3 4e-14 seq28532 86.0 6e-12 >seq496362 Length=882 Score = 237 bits (262), Expect = 1e-57 Identities = 411/586 (70%), Gaps = 16/586 (3%) Strand=Plus/Minus Query 11633 GCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCG 11692 || |||||||| || | ||||||||| | | || | ||| || || ||||| ||||| Sbjct 630 GCGAAATCACAGTGAACACCTTCGTCACGAGAAATCAATTCGTTTGAGAATGTCAATCCT 571 Query 11693 GGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATT 11752 |||||||| ||||||||||| | ||| || || | | ||| | ||| || ||||| ||| Sbjct 570 GGCATCAAACCTCGTTTTTTCAACCAGAAAATGGAACAAAAAGCACCTGAGAAGAAAATT 511 Query 11753 CCCTCCACAGCTGCAAATGCTACTACTCTTTCTCC-ATATACCTTGTTGCTAGATATCCA 11811 || ||||| |||||||| || | | || ||| | | | | || | | |||| Sbjct 510 CCTTCCACTGCTGCAAAAGCAATCAATCGCTCTGCGAAAGAATCTGAATCAA----TCCA 455 Query 11812 TTTTCTGGCCCAATCAGCTTTCTTTTTTAC-GCATTCCATTGTTTCTATAGCGTTAAATA 11870 || | ||||| || ||||||||||| | ||| | || ||| ||||| |||| Sbjct 454 TTGAATTGCCCAGTCCGCTTTCTTTTTGATAGCAGGAAAAACTT-CTAATGCGTTGAATA 396 Query 11871 AATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTG 11930 ||| ||| ||| | ||| ||||||| || || ||||| || |||| |||| Sbjct 395 AATCGGCTTTCTCTGCTTCGTCTTTTACATAAGTGTCGATTAACAAGGAATACGTTTCGC 336 Query 11931 AATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGT-GCCTCTGAACACTGT 11989 |||||||||||||| ||||| || ||||||||| | | || || | | | || Sbjct 335 TGTGAATATTTTCCATCATGATTTGGAAACCATAGAAAGAATTTCGCTTCAGCATATTGC 276 Query 11990 ACATCCACATA-AAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAA 12048 || || | || ||| |||| || | ||| ||||||||||| || || || || || Sbjct 275 ACTTC-ATTTACAAAGTTTTCAGCAAGATTTTCATTTACAATTCCGTCTGAAGCGGCGAA 217 Query 12049 AAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAA---TTTATCCCAATC 12105 |||||||| || ||||| |||||||||| |||||||||| | || |||| ||| || Sbjct 216 AAATGCTAAAATGTGTTTGATAAAGTATTGTTCGTCTTTATTCAACTTGTTATTCCAGTC 157 Query 12106 ATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTG-TT 12164 | |||||||| ||| ||||| | |||||| | ||||| ||||| || | || | || Sbjct 156 GTTTAAATCTTGTGACAAATCAATTTCTTCGGCAGTCCAGAAACTCGCTCC--ATGGATT 99 Query 12165 TATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 |||| | || ||| ||||| || | ||| || || ||||| || || Sbjct 98 TATAAAATTCCCAAATATCTTGGTGCTTGATCGGAAAAATGACAAA 53 >seq231358 Length=2322 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || || ||||| || || || | |||||||||| |||| || || Sbjct 630 TCGTCTCTGCTGATGAGCTCATTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTC 689 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || ||||| || || ||||| ||||| ||||||||||| || || || || Sbjct 690 AGCCAGAAGATGGCAGCGAAGGACCCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGGCC 749 Query 11774 ACTACTCTTTCTCC 11787 || |||| ||||| Sbjct 750 ACCACTCGCTCTCC 763 >seq28532 Length=8763 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || || || || || || ||||| || || || | |||||||| || |||| || || Sbjct 1943 TCATCCCTGCTAATCAGCTCATTGGAGAAGGTAAGCCCGGGCATTAAGCCTCTCTTCTTC 1884 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | |||||| || ||||| || ||||| || ||||| ||||||||||| || ||||| || Sbjct 1883 AGCCAAAAGATGGCAGCGAACGAACCGGAGAAGAAGATTCCCTCCACGGCAGCAAAAGCC 1824 Query 11774 AC 11775 || Sbjct 1823 AC 1822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 465447166006880