Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq44246 389 5e-103 seq496362 167 3e-36 seq388653 120 4e-22 seq103378 96.9 5e-15 >seq44246 Length=4029 Score = 389 bits (430), Expect = 5e-103 Identities = 1156/1779 (65%), Gaps = 12/1779 (1%) Strand=Plus/Minus Query 65163 AGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTA 65222 || ||||| || || || | || || ||||| |||| || | || ||||| || || Sbjct 1774 AGCAGATGGGGGTTGACGATCTGGAACTCTCCTGACAGGACCCGGCGGGTGTAGATGTTG 1715 Query 65223 CTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 65282 ||||| || | || | ||||| || || |||| || || || || || || || ||| Sbjct 1714 CTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGC 1655 Query 65283 ATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGT 65342 || || |||| || | || || || | |||| | ||| || || || || | Sbjct 1654 ATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGC 1595 Query 65343 TCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGT 65400 | ||| | ||| || || | || | | | || || || || | Sbjct 1594 TTCCAGTCCCACAGGTCGGTGGG--CGTCTTCTCCCACATGTCGTACTGGAGGATGCCCT 1537 Query 65401 TACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAAC 65460 | ||| || || ||| | || || ||||| || || || | || ||||| || | Sbjct 1536 TGCTGACGGGGGAGCCT-CGTACGTGTCGTAGGGGCCCAGCTCGGCGGCCAGTTCGCAGC 1478 Query 65461 TCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTT 65520 | ||||| | || |||| || ||||| || ||||||| | || || || || | Sbjct 1477 TGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCCT 1418 Query 65521 CCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAA 65580 | |||| ||||| || ||| | || || || ||||| || | || || || || | Sbjct 1417 CGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCAGGCCCTGGACGCCGA 1358 Query 65581 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 65640 ||||||| || || || | ||| || || || || || || | || || | |||| Sbjct 1357 TACCGATCGGCCTGTGGCGCTTGTTGGACTGATCGGCCTCGGGCACCGGGTAGAAGTTAA 1298 Query 65641 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 65700 | ||||| || || || || || | || || |||||| |||| || |||||| | Sbjct 1297 TCTCTATGATCTTGTTCAGGTTCTTCACGATCACTTTGGTCACAGACTCCAGTTTCTTGA 1238 Query 65701 AATCAAAT---CGCTCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAA 65757 | ||||| ||||| | || ||||||| | || | || ||||||||||| | Sbjct 1237 AGTCAAAAGTCCGCTCGGGGGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACACA 1178 Query 65758 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 65817 | || ||||||| || | |||| | || || ||||| || || || ||||||| Sbjct 1177 CAGCGACCTCATCGCCACTGGAGTATTCAACGATTTCCGTGCAGAGGTTGCTGCACTTGA 1118 Query 65818 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 65877 ||||||| | || || || || ||||| |||| || || || || || || ||| | | Sbjct 1117 TGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACG 1058 Query 65878 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTA 65937 | || || | || |||| || || || || || | ||| || ||||||| | | Sbjct 1057 GCGTGCCCGACTCCGTCTGGGACTCGATGATGGCGTGCCACACCTGCTGAGCCTTCACCA 998 Query 65938 TAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCC 65997 | ||| | || | || ||| | || || | || ||||| || |||| Sbjct 997 CACGCTTGACCCGGCCCTCCCGCTCATATTGGGTGTAGAGCTTCTCAAACTCCTCCCCCC 938 Query 65998 AAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCT 66057 | | ||||| || || | || |||||||||| ||||| || || || Sbjct 937 AGCACTCGTCCAGCCCGGGGCTCTCGCTGGGACACATCAGAGACCAGTCCTGGTTGCTCT 878 Query 66058 TCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTA 66116 ||| | ||||| || || || || ||||| | ||| || || | |||||||| ||| Sbjct 877 CCACCCTCTTCATGAACAGGTCGGGGATCCACA-AGCCGTAGAAGAGATCTCTGGCTCTC 819 Query 66117 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCAC 66176 || ||||| || || || ||||| || || || ||||| | | | ||| | |||||| Sbjct 818 TGCTCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCAAAGTGCCAC 759 Query 66177 GGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 66236 || |||| ||| ||||| | | || || || ||||| || ||||| || | || | Sbjct 758 GGCTCCAGGTACATGGCGAAGGCGCCGGGTCGCTTGTTGCCGCCCTGGTCGACATAGCGT 699 Query 66237 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCG 66296 || ||||| || || || |||| ||| || | | || ||||| | || ||||| ||| Sbjct 698 GCTGTGTTGTTGTAGACCCTCAGCATGGGGACCAGCCCGTTGGAGTTGCCGTTGGTGCCG 639 Query 66297 GAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 66356 | ||| ||||| || | | || || || | | | ||| ||||| |||||| Sbjct 638 GCGATGTAGCTCCCGGTGGATCGGATGCAGCTGACGGCCACACCGATTCCTCCTGCCGAC 579 Query 66357 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 66416 || ||||| | ||| || | || | ||| || ||||||||||| || || || ||| || Sbjct 578 TTGGAGATGAGTGCACACTGCTTCAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTC 519 Query 66417 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 66476 ||| | || || || ||||| || | || | || | ||||| || || || | || Sbjct 518 ATGGTGAGCAGGAAGCAGCTGGAGAGCTGAGGCCGGTTGGTTCCTGCGTTGAAGAGCGTG 459 Query 66477 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT 66536 || || ||||| || ||||| || || || || || ||||| ||||| || || | ||| Sbjct 458 GGGGAGGCGTGGGTGAACCACTTCTCCGAGAGCAGGTTGTAGGTCTCGATGGCGGCGTCG 399 Query 66537 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACG 66596 |||||| | || ||||| || | || | ||| | ||||||||| || | || | Sbjct 398 ATATCCGTCTTGTGGATTCCGACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCCGCC 339 Query 66597 ATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 66656 | ||| ||| || |||| || ||||||| |||| || || || || || ||||| Sbjct 338 ACTTTGCCGTTGATCTTCAGCAGGTAGGATCGCTCCAGCGTCTTGAAGCCGAAGAAGTTG 279 Query 66657 TATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACT 66716 || || || |||| ||| | || || |||||||||| ||||| | | ||| Sbjct 278 TAGGAGAAATCTCTGTCGAAGATGATGGCCGAGTTGAGGCGGTCCTTGTGGGCGAGAACG 219 Query 66717 ACATCCATGGTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATA 66775 | || | ||| | ||| || || || || || || | || ||| |||| || Sbjct 218 ATGTCGAGGGT-CTCCTTGGAGATCATGGGGGAGTGGCGTCTGTTCAGAGGGTTGATGTA 160 Query 66776 GTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGA 66835 | || | | ||||||||||| ||||| || | || || || || ||||| || || || Sbjct 159 GCTGTACAGGTCCTCCATCACCTCACTGAAAACCTTCTTCGTCTCCTTGTGCAGGTTGGA 100 Query 66836 TACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGC 66895 ||||| || | ||||| | ||||| || ||||| |||| || || ||||| | Sbjct 99 GACGGCGATCCGGGCGGCGAGGATGGCGTAGTCCGGGTGTTTGGTGGTGAGGGTGGCGGT 40 Query 66896 TATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTAC 66934 || || || ||||| ||||||| || || || || || Sbjct 39 GATCTCTGCAGCCAGGGTGTCCAGCTCCACGGTGGTGAC 1 >seq496362 Length=882 Score = 167 bits (184), Expect = 3e-36 Identities = 420/621 (68%), Gaps = 23/621 (4%) Strand=Plus/Minus Query 36160 TGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 36219 ||||||||| ||||| | ||| ||||| | | ||| |||||||| || || || | ||| Sbjct 631 TGCGAAATCACAGTGAACACCTTCGTCACGAGAAATCAATTCGTTTGAGAATGTCAATCC 572 Query 36220 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAAT 36279 ||||| | || || ||||| | ||| || ||||| ||| | || || |||||||| Sbjct 571 TGGCATCAAACCTCGTTTTTTCAACCAGAAAATGGAACAAAAAGCACCTGAGAAGAAAAT 512 Query 36280 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCA 36339 |||||| ||||| ||||| ||||| | || |||| | || | ||| || ||||| Sbjct 511 TCCTTCCACTGCTGCAAAAGCAATCAATCGCTCTGCGAAA--GAATCTG-AATCAATCCA 455 Query 36340 CTTTTGA---GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396 |||| ||||| || || |||||||| | | ||| | |||| || || || Sbjct 454 ---TTGAATTGCCCAGTCCGCTTTCTTTTTGATAGCAGGAAAAACTTCTAATGCGTTGAA 398 Query 36397 GAGATAGtttttttCATTACT--ATCTTTAACATATGTATCAATCAAAAGACTATACATT 36454 | || | ||| || | || ||||| ||||| || || || || | |||| || Sbjct 397 TAAATCGGCTTTCTC--TGCTTCGTCTTTTACATAAGTGTCGATTAACAAGGAATACGTT 340 Query 36455 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA-CATCTAGCCTCGGTAAT 36513 || ||||| ||||| || ||||| || || |||||| || | || || | | Sbjct 339 TCGCTGTGAATATTTTCCATCATGATTTGGAAACCATAGAAAGAATTTCGCTTCAGCATA 280 Query 36514 CTGTACTTC-TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 36572 || ||||| | |||||| | ||| || | ||||||||| || |||||||| || | Sbjct 279 TTGCACTTCATTTACAAAGT-TTTCAGCAAGATTTTCATTTACAATTCCGTCTGAAGCGG 221 Query 36573 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-TTGGTGTTAGT--TTATTCC 36629 | ||||| || || | ||||| ||||| |||| ||||| || | | | ||||||| Sbjct 220 CGAAAAATGCTAAAATGTGTTTGATAAAGTATTGTTCGTCTTTATTCAACTTGTTATTCC 161 Query 36630 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689 | || || | ||||| || | ||| | |||||| | ||||| || | ||| Sbjct 160 AGTCGTTTAAATCTTGTGACAAATCAATTTCTTCGGCAGTCCAGAA-ACTCGCTCCATGG 102 Query 36690 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA-TTTTGA 36748 |||||| | | ||| || || || | | || |||||||| ||||| | | |||| | Sbjct 101 ATTTATAAAATTCCCAAATATCTTGGTGCTTGATCGGAAAAATGACAAAACGATTTTTTA 42 Query 36749 TTTT-TTGCAAGGATTGGTTC 36768 |||| ||| || ||||| || Sbjct 41 TTTTCTTGTAA-AATTGGCTC 22 >seq388653 Length=382 Score = 120 bits (132), Expect = 4e-22 Identities = 266/389 (68%), Gaps = 14/389 (4%) Strand=Plus/Minus Query 65752 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA-AAGATT-ACT 65809 |||| || ||||| |||| || | | |||| || ||||| || || ||| || || Sbjct 382 TACACACTGCTACTTCATCAGGAGAGGTGTATTCCATGATCTCTGTACACAAGTTTGACG 323 Query 65810 ACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 65869 | || || ||||||||||| | ||| || || ||| |||||| ||||| | Sbjct 322 A-ACGA-ATAGTTCCTAAATTCTTTTGGTTTGATTTACGGTTTGCCGCATCTTTATATAA 265 Query 65870 AATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC-CAGACGACTC--G 65926 || | ||||| ||||| || || |||||||||| ||| |||| | || | || | Sbjct 264 CATATACGGAGTTCCAGTCTCGATTTGAGATTCTAGAAT---TTTCTCCCACAATTCATG 208 Query 65927 AGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGT--ATACAATCGTTCG 65984 || || ||| | ||| || || || ||||| ||| | ||| ||| ||| Sbjct 207 TGCTTTAATTGTT--TTTCTACCTTTTCCAGCTTTCTCGTAGCTTTCATATAATGCTTCA 150 Query 65985 AACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCAC 66044 ||||| || || |||||| || ||||||||||||||| | |||||||| || | ||| Sbjct 149 AACTCTTCACCATAAACATCGTACAATCCAGGACATTCGTTAGGACACATTAAAGTCCAG 90 Query 66045 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAA 66104 | |||||| || | || |||||||| || | ||||| | |||| | || | |||||| Sbjct 89 TTTCCGTCTTCTTGTACACGTTTCATGAATAAATCAGAAGTCCACATGGCAAAGAATAAA 30 Query 66105 TCTCTGGTTCTATGTTCCTCGTTTCCTGT 66133 ||||| | | ||| || |||||||| Sbjct 29 TCTCTTGCACGCATTTCTTCTTTTCCTGT 1 >seq103378 Length=1867 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || ||||| || | ||||| || ||||| || ||||| ||||| || || | ||| Sbjct 579 GTGCCGGCATTGAACAGTGTAGGTGAGGCGTGGGTGAACCACTTTTCCGACAGCAAGTTG 520 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 ||||||||||| |||| || || || | || ||||| || || || || | ||||| | Sbjct 519 TACGTCTCAATGGCTGCATCGATGTCTCTTTTGTGAATCCCGACGGCCACTCTCATTAGC 460 Query 66576 ATGTGCTGAGGTCTTTCA 66593 |||||||| ||||| ||| Sbjct 459 ATGTGCTGGGGTCTCTCA 442 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 65789 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 65848 |||||| ||||| ||||| || | ||||||||||| | ||| || || || ||||| Sbjct 1774 TATCTCTGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGTTGCTCTTCCC 1715 Query 65849 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 65908 ||| || || ||||| || || ||| | || ||||| |||||| |||| || || || || Sbjct 1714 GTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTTTCAGTCTGTGACTCGATGAT 1655 Query 65909 CGCTTTCCA 65917 || | ||| Sbjct 1654 GGCGTACCA 1646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 653849410965680