Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq44246 389 5e-103
seq496362 167 3e-36
seq388653 120 4e-22
seq103378 96.9 5e-15
>seq44246
Length=4029
Score = 389 bits (430), Expect = 5e-103
Identities = 1156/1779 (65%), Gaps = 12/1779 (1%)
Strand=Plus/Minus
Query 65163 AGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTA 65222
|| ||||| || || || | || || ||||| |||| || | || ||||| || ||
Sbjct 1774 AGCAGATGGGGGTTGACGATCTGGAACTCTCCTGACAGGACCCGGCGGGTGTAGATGTTG 1715
Query 65223 CTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 65282
||||| || | || | ||||| || || |||| || || || || || || || |||
Sbjct 1714 CTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGC 1655
Query 65283 ATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGT 65342
|| || |||| || | || || || | |||| | ||| || || || || |
Sbjct 1654 ATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGC 1595
Query 65343 TCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGT 65400
| ||| | ||| || || | || | | | || || || || |
Sbjct 1594 TTCCAGTCCCACAGGTCGGTGGG--CGTCTTCTCCCACATGTCGTACTGGAGGATGCCCT 1537
Query 65401 TACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAAC 65460
| ||| || || ||| | || || ||||| || || || | || ||||| || |
Sbjct 1536 TGCTGACGGGGGAGCCT-CGTACGTGTCGTAGGGGCCCAGCTCGGCGGCCAGTTCGCAGC 1478
Query 65461 TCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTT 65520
| ||||| | || |||| || ||||| || ||||||| | || || || || |
Sbjct 1477 TGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCCT 1418
Query 65521 CCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAA 65580
| |||| ||||| || ||| | || || || ||||| || | || || || || |
Sbjct 1417 CGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCAGGCCCTGGACGCCGA 1358
Query 65581 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 65640
||||||| || || || | ||| || || || || || || | || || | ||||
Sbjct 1357 TACCGATCGGCCTGTGGCGCTTGTTGGACTGATCGGCCTCGGGCACCGGGTAGAAGTTAA 1298
Query 65641 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 65700
| ||||| || || || || || | || || |||||| |||| || |||||| |
Sbjct 1297 TCTCTATGATCTTGTTCAGGTTCTTCACGATCACTTTGGTCACAGACTCCAGTTTCTTGA 1238
Query 65701 AATCAAAT---CGCTCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAA 65757
| ||||| ||||| | || ||||||| | || | || ||||||||||| |
Sbjct 1237 AGTCAAAAGTCCGCTCGGGGGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACACA 1178
Query 65758 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 65817
| || ||||||| || | |||| | || || ||||| || || || |||||||
Sbjct 1177 CAGCGACCTCATCGCCACTGGAGTATTCAACGATTTCCGTGCAGAGGTTGCTGCACTTGA 1118
Query 65818 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 65877
||||||| | || || || || ||||| |||| || || || || || || ||| | |
Sbjct 1117 TGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACG 1058
Query 65878 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTA 65937
| || || | || |||| || || || || || | ||| || ||||||| | |
Sbjct 1057 GCGTGCCCGACTCCGTCTGGGACTCGATGATGGCGTGCCACACCTGCTGAGCCTTCACCA 998
Query 65938 TAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCC 65997
| ||| | || | || ||| | || || | || ||||| || ||||
Sbjct 997 CACGCTTGACCCGGCCCTCCCGCTCATATTGGGTGTAGAGCTTCTCAAACTCCTCCCCCC 938
Query 65998 AAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCT 66057
| | ||||| || || | || |||||||||| ||||| || || ||
Sbjct 937 AGCACTCGTCCAGCCCGGGGCTCTCGCTGGGACACATCAGAGACCAGTCCTGGTTGCTCT 878
Query 66058 TCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTA 66116
||| | ||||| || || || || ||||| | ||| || || | |||||||| |||
Sbjct 877 CCACCCTCTTCATGAACAGGTCGGGGATCCACA-AGCCGTAGAAGAGATCTCTGGCTCTC 819
Query 66117 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCAC 66176
|| ||||| || || || ||||| || || || ||||| | | | ||| | ||||||
Sbjct 818 TGCTCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCAAAGTGCCAC 759
Query 66177 GGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 66236
|| |||| ||| ||||| | | || || || ||||| || ||||| || | || |
Sbjct 758 GGCTCCAGGTACATGGCGAAGGCGCCGGGTCGCTTGTTGCCGCCCTGGTCGACATAGCGT 699
Query 66237 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCG 66296
|| ||||| || || || |||| ||| || | | || ||||| | || ||||| |||
Sbjct 698 GCTGTGTTGTTGTAGACCCTCAGCATGGGGACCAGCCCGTTGGAGTTGCCGTTGGTGCCG 639
Query 66297 GAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 66356
| ||| ||||| || | | || || || | | | ||| ||||| ||||||
Sbjct 638 GCGATGTAGCTCCCGGTGGATCGGATGCAGCTGACGGCCACACCGATTCCTCCTGCCGAC 579
Query 66357 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 66416
|| ||||| | ||| || | || | ||| || ||||||||||| || || || ||| ||
Sbjct 578 TTGGAGATGAGTGCACACTGCTTCAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTC 519
Query 66417 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 66476
||| | || || || ||||| || | || | || | ||||| || || || | ||
Sbjct 518 ATGGTGAGCAGGAAGCAGCTGGAGAGCTGAGGCCGGTTGGTTCCTGCGTTGAAGAGCGTG 459
Query 66477 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT 66536
|| || ||||| || ||||| || || || || || ||||| ||||| || || | |||
Sbjct 458 GGGGAGGCGTGGGTGAACCACTTCTCCGAGAGCAGGTTGTAGGTCTCGATGGCGGCGTCG 399
Query 66537 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACG 66596
|||||| | || ||||| || | || | ||| | ||||||||| || | || |
Sbjct 398 ATATCCGTCTTGTGGATTCCGACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCCGCC 339
Query 66597 ATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 66656
| ||| ||| || |||| || ||||||| |||| || || || || || |||||
Sbjct 338 ACTTTGCCGTTGATCTTCAGCAGGTAGGATCGCTCCAGCGTCTTGAAGCCGAAGAAGTTG 279
Query 66657 TATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACT 66716
|| || || |||| ||| | || || |||||||||| ||||| | | |||
Sbjct 278 TAGGAGAAATCTCTGTCGAAGATGATGGCCGAGTTGAGGCGGTCCTTGTGGGCGAGAACG 219
Query 66717 ACATCCATGGTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATA 66775
| || | ||| | ||| || || || || || || | || ||| |||| ||
Sbjct 218 ATGTCGAGGGT-CTCCTTGGAGATCATGGGGGAGTGGCGTCTGTTCAGAGGGTTGATGTA 160
Query 66776 GTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGA 66835
| || | | ||||||||||| ||||| || | || || || || ||||| || || ||
Sbjct 159 GCTGTACAGGTCCTCCATCACCTCACTGAAAACCTTCTTCGTCTCCTTGTGCAGGTTGGA 100
Query 66836 TACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGC 66895
||||| || | ||||| | ||||| || ||||| |||| || || ||||| |
Sbjct 99 GACGGCGATCCGGGCGGCGAGGATGGCGTAGTCCGGGTGTTTGGTGGTGAGGGTGGCGGT 40
Query 66896 TATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTAC 66934
|| || || ||||| ||||||| || || || || ||
Sbjct 39 GATCTCTGCAGCCAGGGTGTCCAGCTCCACGGTGGTGAC 1
>seq496362
Length=882
Score = 167 bits (184), Expect = 3e-36
Identities = 420/621 (68%), Gaps = 23/621 (4%)
Strand=Plus/Minus
Query 36160 TGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 36219
||||||||| ||||| | ||| ||||| | | ||| |||||||| || || || | |||
Sbjct 631 TGCGAAATCACAGTGAACACCTTCGTCACGAGAAATCAATTCGTTTGAGAATGTCAATCC 572
Query 36220 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAAT 36279
||||| | || || ||||| | ||| || ||||| ||| | || || ||||||||
Sbjct 571 TGGCATCAAACCTCGTTTTTTCAACCAGAAAATGGAACAAAAAGCACCTGAGAAGAAAAT 512
Query 36280 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCA 36339
|||||| ||||| ||||| ||||| | || |||| | || | ||| || |||||
Sbjct 511 TCCTTCCACTGCTGCAAAAGCAATCAATCGCTCTGCGAAA--GAATCTG-AATCAATCCA 455
Query 36340 CTTTTGA---GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396
|||| ||||| || || |||||||| | | ||| | |||| || || ||
Sbjct 454 ---TTGAATTGCCCAGTCCGCTTTCTTTTTGATAGCAGGAAAAACTTCTAATGCGTTGAA 398
Query 36397 GAGATAGtttttttCATTACT--ATCTTTAACATATGTATCAATCAAAAGACTATACATT 36454
| || | ||| || | || ||||| ||||| || || || || | |||| ||
Sbjct 397 TAAATCGGCTTTCTC--TGCTTCGTCTTTTACATAAGTGTCGATTAACAAGGAATACGTT 340
Query 36455 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA-CATCTAGCCTCGGTAAT 36513
|| ||||| ||||| || ||||| || || |||||| || | || || | |
Sbjct 339 TCGCTGTGAATATTTTCCATCATGATTTGGAAACCATAGAAAGAATTTCGCTTCAGCATA 280
Query 36514 CTGTACTTC-TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 36572
|| ||||| | |||||| | ||| || | ||||||||| || |||||||| || |
Sbjct 279 TTGCACTTCATTTACAAAGT-TTTCAGCAAGATTTTCATTTACAATTCCGTCTGAAGCGG 221
Query 36573 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-TTGGTGTTAGT--TTATTCC 36629
| ||||| || || | ||||| ||||| |||| ||||| || | | | |||||||
Sbjct 220 CGAAAAATGCTAAAATGTGTTTGATAAAGTATTGTTCGTCTTTATTCAACTTGTTATTCC 161
Query 36630 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689
| || || | ||||| || | ||| | |||||| | ||||| || | |||
Sbjct 160 AGTCGTTTAAATCTTGTGACAAATCAATTTCTTCGGCAGTCCAGAA-ACTCGCTCCATGG 102
Query 36690 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA-TTTTGA 36748
|||||| | | ||| || || || | | || |||||||| ||||| | | |||| |
Sbjct 101 ATTTATAAAATTCCCAAATATCTTGGTGCTTGATCGGAAAAATGACAAAACGATTTTTTA 42
Query 36749 TTTT-TTGCAAGGATTGGTTC 36768
|||| ||| || ||||| ||
Sbjct 41 TTTTCTTGTAA-AATTGGCTC 22
>seq388653
Length=382
Score = 120 bits (132), Expect = 4e-22
Identities = 266/389 (68%), Gaps = 14/389 (4%)
Strand=Plus/Minus
Query 65752 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA-AAGATT-ACT 65809
|||| || ||||| |||| || | | |||| || ||||| || || ||| || ||
Sbjct 382 TACACACTGCTACTTCATCAGGAGAGGTGTATTCCATGATCTCTGTACACAAGTTTGACG 323
Query 65810 ACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 65869
| || || ||||||||||| | ||| || || ||| |||||| ||||| |
Sbjct 322 A-ACGA-ATAGTTCCTAAATTCTTTTGGTTTGATTTACGGTTTGCCGCATCTTTATATAA 265
Query 65870 AATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC-CAGACGACTC--G 65926
|| | ||||| ||||| || || |||||||||| ||| |||| | || | || |
Sbjct 264 CATATACGGAGTTCCAGTCTCGATTTGAGATTCTAGAAT---TTTCTCCCACAATTCATG 208
Query 65927 AGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGT--ATACAATCGTTCG 65984
|| || ||| | ||| || || || ||||| ||| | ||| ||| |||
Sbjct 207 TGCTTTAATTGTT--TTTCTACCTTTTCCAGCTTTCTCGTAGCTTTCATATAATGCTTCA 150
Query 65985 AACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCAC 66044
||||| || || |||||| || ||||||||||||||| | |||||||| || | |||
Sbjct 149 AACTCTTCACCATAAACATCGTACAATCCAGGACATTCGTTAGGACACATTAAAGTCCAG 90
Query 66045 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAA 66104
| |||||| || | || |||||||| || | ||||| | |||| | || | ||||||
Sbjct 89 TTTCCGTCTTCTTGTACACGTTTCATGAATAAATCAGAAGTCCACATGGCAAAGAATAAA 30
Query 66105 TCTCTGGTTCTATGTTCCTCGTTTCCTGT 66133
||||| | | ||| || ||||||||
Sbjct 29 TCTCTTGCACGCATTTCTTCTTTTCCTGT 1
>seq103378
Length=1867
Score = 96.9 bits (106), Expect = 5e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515
|| || ||||| || | ||||| || ||||| || ||||| ||||| || || | |||
Sbjct 579 GTGCCGGCATTGAACAGTGTAGGTGAGGCGTGGGTGAACCACTTTTCCGACAGCAAGTTG 520
Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575
||||||||||| |||| || || || | || ||||| || || || || | ||||| |
Sbjct 519 TACGTCTCAATGGCTGCATCGATGTCTCTTTTGTGAATCCCGACGGCCACTCTCATTAGC 460
Query 66576 ATGTGCTGAGGTCTTTCA 66593
|||||||| ||||| |||
Sbjct 459 ATGTGCTGGGGTCTCTCA 442
Score = 84.2 bits (92), Expect = 3e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 65789 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 65848
|||||| ||||| ||||| || | ||||||||||| | ||| || || || |||||
Sbjct 1774 TATCTCTGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGTTGCTCTTCCC 1715
Query 65849 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 65908
||| || || ||||| || || ||| | || ||||| |||||| |||| || || || ||
Sbjct 1714 GTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTTTCAGTCTGTGACTCGATGAT 1655
Query 65909 CGCTTTCCA 65917
|| | |||
Sbjct 1654 GGCGTACCA 1646
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 653849410965680
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