Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq44246 428 6e-115 seq388653 129 8e-25 seq231358 114 2e-20 seq103378 100 4e-16 seq28532 96.9 5e-15 >seq44246 Length=4029 Score = 428 bits (474), Expect = 6e-115 Identities = 1172/1780 (66%), Gaps = 14/1780 (1%) Strand=Plus/Minus Query 79042 AGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTA 79101 || ||||| || || || | || || ||||| |||| || | || ||||| || || Sbjct 1774 AGCAGATGGGGGTTGACGATCTGGAACTCTCCTGACAGGACCCGGCGGGTGTAGATGTTG 1715 Query 79102 CTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGC 79161 ||||| || | || | || || || || |||| || || || || || ||||| ||| Sbjct 1714 CTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGC 1655 Query 79162 ATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAG-AGA 79220 || || |||| || | || || || | |||| ||| || || || || || Sbjct 1654 ATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGC 1595 Query 79221 TTCCCAATCCCAAAGATCAGACGG-GACAACATTCCAAAGATCATATTGTAGAATACCGT 79279 |||| | ||||| || || | || | | | | ||| | || || || || || || | Sbjct 1594 TTCC-AGTCCCACAGGTCGGTGGGCGTCTTC-TCCCACATGTCGTACTGGAGGATGCCCT 1537 Query 79280 TACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAAC 79339 | || || || ||| ||| || || || || || || |||| | ||| || | Sbjct 1536 TGCTGACGGGGGAGCCTC-GTACGTGTCGTAGGGGCCCAGCTCGGCGGCCAGTTCGCAGC 1478 Query 79340 TCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTT 79399 | ||||| | || |||| || ||||| || || |||| | || || || || | Sbjct 1477 TGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCCT 1418 Query 79400 CTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAA 79459 | |||| ||||| || ||| | || || || ||||| || | || || || || | Sbjct 1417 CGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCAGGCCCTGGACGCCGA 1358 Query 79460 TACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 79519 ||||||| || || || | ||| || || || || || || | || || | |||| Sbjct 1357 TACCGATCGGCCTGTGGCGCTTGTTGGACTGATCGGCCTCGGGCACCGGGTAGAAGTTAA 1298 Query 79520 TATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAA 79579 | ||||| || || || || ||| | || || |||||| |||| || ||||| | Sbjct 1297 TCTCTATGATCTTGTTCAGGTTCTTCACGATCACTTTGGTCACAGACTCCAGTTTCTTGA 1238 Query 79580 AATCAAATCGTCCA-TCTA---TTACAAACATGTTCAACGCGACAGATGCCAGATTACAA 79635 | ||||| |||| || | || ||||||| | |||| || ||||||||||| Sbjct 1237 AGTCAAAA-GTCCGCTCGGGGGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACAC 1179 Query 79636 ACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTA 79695 || || ||||||| || | |||| | ||||| ||||||||||| || ||||| Sbjct 1178 ACAGCGACCTCATCGCCACTGGAGTATTCAACGATTTCCGTGCAGAGGTTGCTGCACTTG 1119 Query 79696 ATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAAC 79755 |||||||| | || || || || ||||| |||| || || || || || || ||| || Sbjct 1118 ATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTAC 1059 Query 79756 GGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATT 79815 || || || | || |||| || || || || || | ||| || ||||||| | Sbjct 1058 GGCGTGCCCGACTCCGTCTGGGACTCGATGATGGCGTGCCACACCTGCTGAGCCTTCACC 999 Query 79816 ATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCC 79875 | | |||| | || | || ||||| || || | || ||||| || ||| Sbjct 998 ACACGCTTGACCCGGCCCTCCCGCTCATATTGGGTGTAGAGCTTCTCAAACTCCTCCCCC 939 Query 79876 CAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCC 79935 || ||||| | || || | ||| |||||||||| ||||| || | | Sbjct 938 CAGCACTCGTCCAGCCCGGGGCTCTCGCTGGGACACATCAGAGACCAGTCCTGGTTGCTC 879 Query 79936 TTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCT 79994 | || | ||||| || || || || ||||| | ||| || || |||||||||| ||| Sbjct 878 TCCACCCTCTTCATGAACAGGTCGGGGATCCACA-AGCCGTAGAAGAGATCTCTGGCTCT 820 Query 79995 ATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 80054 |||||||| || || || ||||| || || || ||||| | | | ||| | ||||| Sbjct 819 CTGCTCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCAAAGTGCCA 760 Query 80055 CGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCT 80114 ||| |||| ||| ||||| | | || ||||| ||||| || ||||| || | || | Sbjct 759 CGGCTCCAGGTACATGGCGAAGGCGCCGGGTCGCTTGTTGCCGCCCTGGTCGACATAGCG 700 Query 80115 AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCC 80174 || ||||| || || || |||| ||| || | | || ||||| | || ||||| || Sbjct 699 TGCTGTGTTGTTGTAGACCCTCAGCATGGGGACCAGCCCGTTGGAGTTGCCGTTGGTGCC 640 Query 80175 GGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCAT 80234 || ||| ||||| || ||| || || || | | | ||| ||||| |||||| Sbjct 639 GGCGATGTAGCTCCCGGTGGATCGGATGCAGCTGACGGCCACACCGATTCCTCCTGCCGA 580 Query 80235 TTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAAT 80294 || ||||| | ||| || | || | ||| || ||||||||||| ||||| || || | Sbjct 579 CTTGGAGATGAGTGCACACTGCTTCAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTT 520 Query 80295 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 80354 |||| | || || || ||||| || | || | || | ||||| || || || | || Sbjct 519 CATGGTGAGCAGGAAGCAGCTGGAGAGCTGAGGCCGGTTGGTTCCTGCGTTGAAGAGCGT 460 Query 80355 AGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTC 80414 || || ||||| || ||||| || || || || || ||||| ||||| || || | || Sbjct 459 GGGGGAGGCGTGGGTGAACCACTTCTCCGAGAGCAGGTTGTAGGTCTCGATGGCGGCGTC 400 Query 80415 TATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 80474 |||||| | || ||||| |||| || | ||| | ||||||||| || | || | Sbjct 399 GATATCCGTCTTGTGGATTCCGACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCCGC 340 Query 80475 GATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 80534 | ||| || || |||| || ||| ||| |||| || || || || || |||| Sbjct 339 CACTTTGCCGTTGATCTTCAGCAGGTAGGATCGCTCCAGCGTCTTGAAGCCGAAGAAGTT 280 Query 80535 GTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAAC 80594 ||| || || |||| ||| | || || |||||||||| ||||| | | ||| Sbjct 279 GTAGGAGAAATCTCTGTCGAAGATGATGGCCGAGTTGAGGCGGTCCTTGTGGGCGAGAAC 220 Query 80595 TACATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACAT 80653 | || | ||| | ||| || || || || || || | || ||| || | | Sbjct 219 GATGTCGAGGGT-CTCCTTGGAGATCATGGGGGAGTGGCGTCTGTTCAGAGGGTTGATGT 161 Query 80654 AGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTG 80713 || || | | ||||||||||| ||||| || | || || || |||||||| || || | Sbjct 160 AGCTGTACAGGTCCTCCATCACCTCACTGAAAACCTTCTTCGTCTCCTTGTGCAGGTTGG 101 Query 80714 ATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTG 80773 | ||||| || | |||||| | ||||| || || || |||| || || ||||| | Sbjct 100 AGACGGCGATCCGGGCGGCGAGGATGGCGTAGTCCGGGTGTTTGGTGGTGAGGGTGGCGG 41 Query 80774 CTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTAC 80813 || || || ||||| ||||||| || || || || || Sbjct 40 TGATCTCTGCAGCCAGGGTGTCCAGCTCCACGGTGGTGAC 1 >seq388653 Length=382 Score = 129 bits (142), Expect = 8e-25 Identities = 254/367 (69%), Gaps = 18/367 (5%) Strand=Plus/Minus Query 79631 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTT--ACT 79688 |||| || ||||| |||| || | | |||| || || || || || | ||| || Sbjct 382 TACACACTGCTACTTCATCAGGAGAGGTGTATTCCATGATCTCTGTACACAAGTTTGACG 323 Query 79689 ACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 79748 | || ||| ||||||||||| | ||| || || ||| |||||| ||||| | Sbjct 322 A-ACG-AATAGTTCCTAAATTCTTTTGGTTTGATTTACGGTTTGCCGCATCTTTATATAA 265 Query 79749 AATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC-CAGACGACTC--G 79805 || ||||||| ||||| || || |||||||||| ||| |||| | || | || | Sbjct 264 CATATACGGAGTTCCAGTCTCGATTTGAGATTCTAGAAT---TTTCTCCCACAATTCATG 208 Query 79806 AGCCTTTATTATAGACTTGTATCTCTTTTCT--CTTTC--GTATTGTGTATATAATCGTT 79861 || || ||| | || | | |||||| ||||| ||| | ||||||| || Sbjct 207 TGCTTTAATTGT----TTTTCTACCTTTTCCAGCTTTCTCGTAGCTTTCATATAATGCTT 152 Query 79862 CGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACC 79921 | ||||| || || ||||||||| |||||||||||||||| ||||||||| || | || Sbjct 151 CAAACTCTTCACCATAAACATCGTACAATCCAGGACATTCGTTAGGACACATTAAAGTCC 92 Query 79922 ACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 79981 | | ||| || || | ||| |||||||| || | ||||| | |||| | || | |||| Sbjct 91 AGTTTCCGTCTTCTTGTACACGTTTCATGAATAAATCAGAAGTCCACATGGCAAAGAATA 32 Query 79982 GATCTCT 79988 |||||| Sbjct 31 AATCTCT 25 >seq231358 Length=2322 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || || ||||| || || || |||||||| ||||| | ||| | Sbjct 628 CCTCGTCTCTGCTGATGAGCTCATTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 687 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| || || |||||||| ||||||||||| || || ||||| |||| Sbjct 688 TCAGCCAGAAGATGGCAGCGAAGGACCCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGG 747 Query 50102 CAACAAGTCTCTCTCC 50117 | || | || |||||| Sbjct 748 CCACCACTCGCTCTCC 763 >seq103378 Length=1867 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || ||||| || | ||||| || ||||| || ||||| ||||| ||||| | ||| Sbjct 579 GTGCCGGCATTGAACAGTGTAGGTGAGGCGTGGGTGAACCACTTTTCCGACAGCAAGTTG 520 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 ||||||||||| |||| || || || | || ||||| || || || || | ||||| | Sbjct 519 TACGTCTCAATGGCTGCATCGATGTCTCTTTTGTGAATCCCGACGGCCACTCTCATTAGC 460 Query 80455 ATGTGCTGAGGTCTTTCA 80472 |||||||| ||||| ||| Sbjct 459 ATGTGCTGGGGTCTCTCA 442 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| ||||| || || ||||| || || | || || ||||||| || ||| Sbjct 1332 ACTCGTTTCATGAAGAGGTCTGGGATCCACAGGGCGAAGAACAGGTCTCTGGCCCTCTGC 1273 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 ||||| || ||||| ||||| || | || | |||| | | | || |||||||||| Sbjct 1272 TCCTCTTTACCTGTGTTCTTCTTCATCTCTAAGAACTCAAACACGTCCAAATGCCACGGC 1213 Query 80059 TCCAAGTATATGGC 80072 |||| ||| | ||| Sbjct 1212 TCCAGGTACACGGC 1199 >seq28532 Length=8763 Score = 96.9 bits (106), Expect = 5e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || || ||||| || || ||||| || || || |||||||||| ||| | ||| | Sbjct 1945 CCTCATCCCTGCTAATCAGCTCATTGGAGAAGGTAAGCCCGGGCATTAAGCCTCTCTTCT 1886 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||||| |||| || || || || || ||||||||||| || || || ||||| | Sbjct 1885 TCAGCCAAAAGATGGCAGCGAACGAACCGGAGAAGAAGATTCCCTCCACGGCAGCAAAAG 1826 Query 50102 CAACAA 50107 | |||| Sbjct 1825 CCACAA 1820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 713550653863280