Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq496362 228 8e-55
>seq496362
Length=882
Score = 228 bits (252), Expect = 8e-55
Identities = 528/786 (67%), Gaps = 31/786 (4%)
Strand=Plus/Minus
Query 13629 AGTGATATATTTTCCATAAAATCAAATGGATTTAT--TGACATAAACACTTTATCACAAC 13686
||||| || | |||||||| || ||||| ||| || || ||| || | ||||
Sbjct 879 AGTGAAATCATGTCCATAAAGTCGAATGGGTTTGGCGTGTTGTATTCACGTT--CGCAAC 822
Query 13687 CTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAAT 13746
||||||||| || | |||||| | | |||||| | |||||| | |||||||| ||
Sbjct 821 CTAGTTCTACTAAAAGTCTATCGGTTACAAACTCTAAATATTGCGTCATTAAATTCGCAT 762
Query 13747 TCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAG 13806
||||||| |||| ||||||||| | | || | ||||||| |||| || | |
Sbjct 761 TCATACCAATTAAACTTACAGGAAGTGATTCTGTAATAAATTCTCTTTCGATGTTTAAGG 702
Query 13807 CCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTA-----GATGTT- 13860
| || | ||||| || | || | || || | | | ||||| ||||||
Sbjct 701 CGTCAATAATAATGGTTCTGATTCTGTCTTTTG--GCACTTTATTTACCAAGTGATGTTG 644
Query 13861 -TAAAAATTAAACAC-GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT 13918
| |||| ||| || |||||||| |||| || || || | | ||| | ||||||
Sbjct 643 GTGCAAATG---CACTGCGAAATCACAGTGAACACCTTCGTCACGAGAAATCAATTCGTT 587
Query 13919 TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGA 13978
||| ||||| |||||||||||||| ||||||||||| ||||| || || | | ||| |
Sbjct 586 TGAGAATGTCAATCCTGGCATCAAACCTCGTTTTTTCAACCAGAAAATGGAACAAAAAGC 527
Query 13979 CCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGC 14038
|| || ||||| ||||| || ||||| ||||| || || ||||| ||| | || || |
Sbjct 526 ACCTGAGAAGAAAATTCCTTCCACTGCTGCAAAAGCAATCAATCGCTCTGCGAAAGAATC 467
Query 14039 TTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGT 14098
| | ||||||| | ||||| || | ||| ||||| ||| | |
Sbjct 466 TGAAT------CAATCCATTGAATTGCCCAGTCCGCTTTCTTTTTGATAGCAGGAAAAAC 413
Query 14099 TTCAATAGCATTAAATAAATATTCCTTCTCT--TTAGTACTTGAAATGTATGTATCAATA 14156
||| | || || ||||||| | |||||| || || || | | || || || ||
Sbjct 412 TTCTAATGCGTTGAATAAATCGGCTTTCTCTGCTTCGTCTTTTACA--TAAGTGTCGATT 355
Query 14157 AGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCA 14215
| ||| |||| |||| ||| || |||||||| || || |||||||| |||| |
Sbjct 354 AACAAGGAATACGTTTCGCTGTGAATATTTTCCATCATGATTTGGAAACCATAGAAAGAA 295
Query 14216 TCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTAT 14275
| | ||||| | |||| ||||| ||| |||| || | ||||||||| || ||
Sbjct 294 TTTCGCTTCAGCATATTGCACTTCATTTACAAAGTTTTCAGCAAGATTTTCATTTACAAT 235
Query 14276 ACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTT 14335
|| || ||| || |||||||| || |||| ||| ||||||||||| || || || ||
Sbjct 234 TCCGTCTGAAGCGGCGAAAAATGCTAAAATGTGTTTGATAAAGTATTGTTCGTCTTTATT 175
Query 14336 GA---GTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392
| || ||||| ||| |||||| | || | ||| | ||| || | ||||| ||
Sbjct 174 CAACTTGTTATTCCAGTCGTTTAAATCTTGTGACAAATCAATTTCTTCGGCAGTCCAGAA 115
Query 14393 ACTAGC 14398
||| ||
Sbjct 114 ACTCGC 109
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476576774706800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |