Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq496362 235 5e-57 >seq496362 Length=882 Score = 235 bits (260), Expect = 5e-57 Identities = 586/875 (67%), Gaps = 35/875 (4%) Strand=Plus/Minus Query 13417 AGTGATATATTTTCCATAAAATCGAATGGATTTGT--TGACATAAACACTTTATCACAAC 13474 ||||| || | |||||||| |||||||| |||| || || ||| || | |||| Sbjct 879 AGTGAAATCATGTCCATAAAGTCGAATGGGTTTGGCGTGTTGTATTCACGTT--CGCAAC 822 Query 13475 CTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAAT 13534 ||||||||| ||| | |||||| | | |||||| | |||||| | |||||||| || Sbjct 821 CTAGTTCTACTAAAAGTCTATCGGTTACAAACTCTAAATATTGCGTCATTAAATTCGCAT 762 Query 13535 TCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAG 13594 ||||||| |||| ||||||||| | | || | ||||||| |||| || | | Sbjct 761 TCATACCAATTAAACTTACAGGAAGTGATTCTGTAATAAATTCTCTTTCGATGTTTAAGG 702 Query 13595 CCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTA-----GATGTT- 13648 | || | ||||| | | || |||| || | | | ||||| |||||| Sbjct 701 CGTCAATAATAATGGTTCTGATTCTGTCTTTTG--GCACTTTATTTACCAAGTGATGTTG 644 Query 13649 -TAAAAATTAAACAC-GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT 13706 | |||| ||| || |||||||| |||| || || || | | ||| | |||||| Sbjct 643 GTGCAAATG---CACTGCGAAATCACAGTGAACACCTTCGTCACGAGAAATCAATTCGTT 587 Query 13707 TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGA 13766 ||| ||||| |||||||||||||| ||||||||||| ||||| || || | | || | Sbjct 586 TGAGAATGTCAATCCTGGCATCAAACCTCGTTTTTTCAACCAGAAAATGGAACAAAAAGC 527 Query 13767 TCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGC 13826 || || ||||| ||||| || ||||| ||||| || || | ||| ||| | || || Sbjct 526 ACCTGAGAAGAAAATTCCTTCCACTGCTGCAAAAGCAATCAATCGCTCTGCGAAAGA--- 470 Query 13827 TTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGT 13886 | || | | ||||||| | ||||| || | ||| ||||| ||| | | Sbjct 469 --ATCTGAATCA-ATCCATTGAATTGCCCAGTCCGCTTTCTTTTTGATAGCAGGAAAAAC 413 Query 13887 TTCGATTGCATTGAATAAATGTTCCTTCTCT--TTAGTACTTGAAATGTATGTATCAATA 13944 ||| | ||| |||||||||| | |||||| || || || | | || || || || Sbjct 412 TTCTAATGCGTTGAATAAATCGGCTTTCTCTGCTTCGTCTTTTACA--TAAGTGTCGATT 355 Query 13945 AGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATA-AAAACA 14003 | ||| |||| |||| ||| || ||||| || || || |||||||| ||| | Sbjct 354 AACAAGGAATACGTTTCGCTGTGAATATTTTCCATCATGATTTGGAAACCATAGAAAGAA 295 Query 14004 TCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAAT 14063 | | ||||| | |||| || || ||| |||| || | |||||||| ||||| Sbjct 294 TTTCGCTTCAGCATATTGCACTTCATTTACAAAGTTTTCAGCAAGATTTTCATTTACAAT 235 Query 14064 ACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTT 14123 || || ||| || |||||||| || |||| ||| ||||||||||| || || || || Sbjct 234 TCCGTCTGAAGCGGCGAAAAATGCTAAAATGTGTTTGATAAAGTATTGTTCGTCTTTATT 175 Query 14124 GA---GTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 | || ||||| ||| |||||| | || | ||| | ||| || | ||||| || Sbjct 174 CAACTTGTTATTCCAGTCGTTTAAATCTTGTGACAAATCAATTTCTTCGGCAGTCCAGAA 115 Query 14181 ACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTAC 14240 ||| || || |||||| | | |||| || |||| | || ||||||| || Sbjct 114 ACTCGCTCCA-TGGATTTATAAAATTCCCAAATATCTTGGTGCTTGATCGGAAAAATGAC 56 Query 14241 AAATC--TTGAAGATGTTTCTTTAAGAATTGGCTC 14273 ||| | || || |||||| | ||||||||| Sbjct 55 AAAACGATTTTTTAT-TTTCTTGTAAAATTGGCTC 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475445057855280