Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq496362 235 5e-57
>seq496362
Length=882
Score = 235 bits (260), Expect = 5e-57
Identities = 586/875 (67%), Gaps = 35/875 (4%)
Strand=Plus/Minus
Query 13417 AGTGATATATTTTCCATAAAATCGAATGGATTTGT--TGACATAAACACTTTATCACAAC 13474
||||| || | |||||||| |||||||| |||| || || ||| || | ||||
Sbjct 879 AGTGAAATCATGTCCATAAAGTCGAATGGGTTTGGCGTGTTGTATTCACGTT--CGCAAC 822
Query 13475 CTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAAT 13534
||||||||| ||| | |||||| | | |||||| | |||||| | |||||||| ||
Sbjct 821 CTAGTTCTACTAAAAGTCTATCGGTTACAAACTCTAAATATTGCGTCATTAAATTCGCAT 762
Query 13535 TCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAG 13594
||||||| |||| ||||||||| | | || | ||||||| |||| || | |
Sbjct 761 TCATACCAATTAAACTTACAGGAAGTGATTCTGTAATAAATTCTCTTTCGATGTTTAAGG 702
Query 13595 CCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTA-----GATGTT- 13648
| || | ||||| | | || |||| || | | | ||||| ||||||
Sbjct 701 CGTCAATAATAATGGTTCTGATTCTGTCTTTTG--GCACTTTATTTACCAAGTGATGTTG 644
Query 13649 -TAAAAATTAAACAC-GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT 13706
| |||| ||| || |||||||| |||| || || || | | ||| | ||||||
Sbjct 643 GTGCAAATG---CACTGCGAAATCACAGTGAACACCTTCGTCACGAGAAATCAATTCGTT 587
Query 13707 TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGA 13766
||| ||||| |||||||||||||| ||||||||||| ||||| || || | | || |
Sbjct 586 TGAGAATGTCAATCCTGGCATCAAACCTCGTTTTTTCAACCAGAAAATGGAACAAAAAGC 527
Query 13767 TCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGC 13826
|| || ||||| ||||| || ||||| ||||| || || | ||| ||| | || ||
Sbjct 526 ACCTGAGAAGAAAATTCCTTCCACTGCTGCAAAAGCAATCAATCGCTCTGCGAAAGA--- 470
Query 13827 TTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGT 13886
| || | | ||||||| | ||||| || | ||| ||||| ||| | |
Sbjct 469 --ATCTGAATCA-ATCCATTGAATTGCCCAGTCCGCTTTCTTTTTGATAGCAGGAAAAAC 413
Query 13887 TTCGATTGCATTGAATAAATGTTCCTTCTCT--TTAGTACTTGAAATGTATGTATCAATA 13944
||| | ||| |||||||||| | |||||| || || || | | || || || ||
Sbjct 412 TTCTAATGCGTTGAATAAATCGGCTTTCTCTGCTTCGTCTTTTACA--TAAGTGTCGATT 355
Query 13945 AGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATA-AAAACA 14003
| ||| |||| |||| ||| || ||||| || || || |||||||| ||| |
Sbjct 354 AACAAGGAATACGTTTCGCTGTGAATATTTTCCATCATGATTTGGAAACCATAGAAAGAA 295
Query 14004 TCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAAT 14063
| | ||||| | |||| || || ||| |||| || | |||||||| |||||
Sbjct 294 TTTCGCTTCAGCATATTGCACTTCATTTACAAAGTTTTCAGCAAGATTTTCATTTACAAT 235
Query 14064 ACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTT 14123
|| || ||| || |||||||| || |||| ||| ||||||||||| || || || ||
Sbjct 234 TCCGTCTGAAGCGGCGAAAAATGCTAAAATGTGTTTGATAAAGTATTGTTCGTCTTTATT 175
Query 14124 GA---GTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180
| || ||||| ||| |||||| | || | ||| | ||| || | ||||| ||
Sbjct 174 CAACTTGTTATTCCAGTCGTTTAAATCTTGTGACAAATCAATTTCTTCGGCAGTCCAGAA 115
Query 14181 ACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTAC 14240
||| || || |||||| | | |||| || |||| | || ||||||| ||
Sbjct 114 ACTCGCTCCA-TGGATTTATAAAATTCCCAAATATCTTGGTGCTTGATCGGAAAAATGAC 56
Query 14241 AAATC--TTGAAGATGTTTCTTTAAGAATTGGCTC 14273
||| | || || |||||| | |||||||||
Sbjct 55 AAAACGATTTTTTAT-TTTCTTGTAAAATTGGCTC 22
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475445057855280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |