Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq44246 408 6e-109 seq388653 122 1e-22 seq408606 93.3 6e-14 seq103378 91.5 2e-13 seq408605 87.8 2e-12 seq231358 87.8 2e-12 seq28532 87.8 2e-12 >seq44246 Length=4029 Score = 408 bits (452), Expect = 6e-109 Identities = 995/1496 (67%), Gaps = 11/1496 (1%) Strand=Plus/Minus Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467 |||| ||||| || || ||||| | || | || || ||||| || || |||| | | Sbjct 1492 CGGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGT 1433 Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527 | || || || || ||||| ||||| || ||| | || || || ||||| || | Sbjct 1432 TCAGCAGCTGGGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCA 1373 Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587 || || ||||| |||||||| || ||||| | ||| || || || || || || | Sbjct 1372 GGCCCTGGACGCCGATACCGATCGGCCTGTGGCGCTTGTTGGACTGATCGGCCTCGGGCA 1313 Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACAT 71647 || || | ||||| ||||| || || || || || | || || |||||| |||| Sbjct 1312 CCGGGTAGAAGTTAATCTCTATGATCTTGTTCAGGTTCTTCACGATCACTTTGGTCACAG 1253 Query 71648 CCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAG 71704 || ||||| || ||||| ||| || | || ||| ||| | || | | Sbjct 1252 ACTCCAGTTTCTTGAAGTCAAAAGTCCGCTCGGGGGTGACGTACATGTTGAGAGCGATGG 1193 Query 71705 ATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAA 71764 | ||||||||||| || || ||||||| || || |||| | ||||| ||||| | Sbjct 1192 AGGCCAGATTACACACAGCGACCTCATCGCCACTGGAGTATTCAACGATTTCCGTGCAGA 1133 Query 71765 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 71824 | || || |||||||||||||| | || || || || ||||| |||| || || || | Sbjct 1132 GGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTT 1073 Query 71825 TATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 71884 | || || || |||| || || | || |||| || || || || || | ||| || Sbjct 1072 TGTACAGCATGTACGGCGTGCCCGACTCCGTCTGGGACTCGATGATGGCGTGCCACACCT 1013 Query 71885 CTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTT 71944 ||||||| | | | |||| | || | || ||||| || || | | Sbjct 1012 GCTGAGCCTTCACCACACGCTTGACCCGGCCCTCCCGCTCATATTGGGTGTAGAGCTTCT 953 Query 71945 CGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 | ||||| || ||||| ||| | ||| | || || | || | |||||||||| ||| Sbjct 952 CAAACTCCTCCCCCCA-GCACTCGTCCAGCCCGGGGCTCTCGCTGGGACACATCAGAGAC 894 Query 72004 CACTC-TCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 72061 || || | | || | || | ||||| || || || || ||||| | ||| || | Sbjct 893 CAGTCCTGGTTGCTC-TCCACCCTCTTCATGAACAGGTCGGGGATCCACA-AGCCGTAGA 836 Query 72062 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 72121 | |||||||||| ||| |||||||| || || || ||||| || || || ||||| | | Sbjct 835 AGAGATCTCTGGCTCTCTGCTCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGA 776 Query 72122 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTC 72181 | ||| | |||||||| |||| ||| ||||| | | || || || ||||| || | Sbjct 775 ACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGTCGCTTGTTGCCGC 716 Query 72182 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 72241 |||| || | || | || ||||| || || || |||| ||| || | | || |||| Sbjct 715 CCTGGTCGACATAGCGTGCTGTGTTGTTGTAGACCCTCAGCATGGGGACCAGCCCGTTGG 656 Query 72242 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGAC 72301 | || ||||| |||| ||| ||||| || ||| || || ||| | | | || Sbjct 655 AGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTGGATCGGATGCAGCTGACGGCCACAC 596 Query 72302 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 72361 | ||||| |||||| || ||||| | ||| || | || | ||| || |||||||||| Sbjct 595 CGATTCCTCCTGCCGACTTGGAGATGAGTGCACACTGCTTCAGCGTGTCGTAGATGCCCT 536 Query 72362 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 72421 | || || || ||| ||||| | || || || ||||| || | || | || | |||| Sbjct 535 CGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGAGAGCTGAGGCCGGTTGGTTC 476 Query 72422 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 72481 | || || || | || || || ||||| || ||||| || || || || || ||||| | Sbjct 475 CTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCCGAGAGCAGGTTGTAGG 416 Query 72482 TCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATAT 72541 |||| || || | || |||||| | || ||||| |||| || | ||| | ||| | Sbjct 415 TCTCGATGGCGGCGTCGATATCCGTCTTGTGGATTCCGACCGACACCCTCATGAGCATGT 356 Query 72542 GCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 72601 |||| || | || | | ||| || || |||| || ||||||| |||| || | Sbjct 355 GCTGCGGCCGCTCCGCCACTTTGCCGTTGATCTTCAGCAGGTAGGATCGCTCCAGCGTCT 296 Query 72602 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTAT 72661 | || || || ||||||| || || |||| ||| | || || |||| ||||| | Sbjct 295 TGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGAAGATGATGGCCGAGTTGAGGCGGT 236 Query 72662 CCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCA 72720 |||| | | ||| || || | ||| | ||| || || || || || || | Sbjct 235 CCTTGTGGGCGAGAACGATGTCGAGGGT-CTCCTTGGAGATCATGGGGGAGTGGCGTCTG 177 Query 72721 TTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTT 72780 || ||| || | ||| || | | ||||||||||| ||||| || | || || || Sbjct 176 TTCAGAGGGTTGATGTAGCTGTACAGGTCCTCCATCACCTCACTGAAAACCTTCTTCGTC 117 Query 72781 TCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGT 72840 |||||||| || || || ||||| || | |||||| || ||||| || || || |||| Sbjct 116 TCCTTGTGCAGGTTGGAGACGGCGATCCGGGCGGCGAGGATGGCGTAGTCCGGGTGTTTG 57 Query 72841 GTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTAC 72896 || || ||||| | || ||||| ||||| ||||||| || || || || || Sbjct 56 GTGGTGAGGGTGGCGGTGATCTCTGCAGCCAGGGTGTCCAGCTCCACGGTGGTGAC 1 >seq388653 Length=382 Score = 122 bits (134), Expect = 1e-22 Identities = 252/364 (69%), Gaps = 12/364 (3%) Strand=Plus/Minus Query 71714 TACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCA-AAGATT-ACT 71771 |||| || ||||| |||| || | || |||| || || || || || ||| || || Sbjct 382 TACACACTGCTACTTCATCAGGAGAGGTGTATTCCATGATCTCTGTACACAAGTTTGACG 323 Query 71772 ACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 71831 | || || ||||||||||| | ||| || || ||| |||||| ||||| | Sbjct 322 A-ACGA-ATAGTTCCTAAATTCTTTTGGTTTGATTTACGGTTTGCCGCATCTTTATATAA 265 Query 71832 AATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC-CAGACGACTCGAG 71890 ||| ||||||| ||||| || || |||||||||| ||| |||| | || | || | Sbjct 264 CATATACGGAGTTCCAGTCTCGATTTGAGATTCTAGAAT---TTTCTCCCACAATTCATG 208 Query 71891 C-CTTTATTATATTCTTGTATCTCTTTTCTCTTTC--GTATTGTGTATATAATCGTTCGA 71947 ||||| | | || || || || || ||||| ||| | ||||||| ||| | Sbjct 207 TGCTTTAAT-TGTTTTTCTACCTTTTCCAGCTTTCTCGTAGCTTTCATATAATGCTTCAA 149 Query 71948 ACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACT 72007 |||| || || || ||| || |||||||||||||| || |||||||| || | ||| | Sbjct 148 ACTCTTCACCATAAACATCGTACAATCCAGGACATTCGTTAGGACACATTAAAGTCCAGT 89 Query 72008 CTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 72067 ||| || || | ||| |||||||| || | ||||| | |||| | || | |||| || Sbjct 88 TTCCGTCTTCTTGTACACGTTTCATGAATAAATCAGAAGTCCACATGGCAAAGAATAAAT 29 Query 72068 CTCT 72071 |||| Sbjct 28 CTCT 25 >seq408606 Length=282 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| || || |||||||| || || || || ||||||| ||||| || | Sbjct 42 CACTGAACACTTTCTTGGTCTCCTTGTGCAGGTTGGACACAGCTATTCGTGCGGCCAGGA 101 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 | || || || || || | || || ||||| ||| | ||||||||||| ||||||| Sbjct 102 TTGCGTAGTCAGGGTGGTTGGTGGTGAGGGTGGCGGCTGTCTCTGCTGCCAGGGTGTCCA 161 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || || || || |||| | ||| | || ||||| |||||||| Sbjct 162 GCTCCACGGTGGTGACTCTGTCATAAAGACCCTGGATCACCTTCAT 207 >seq103378 Length=1867 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || ||||| || | ||||| || ||||| || ||||| ||||| ||||| | ||| Sbjct 579 GTGCCGGCATTGAACAGTGTAGGTGAGGCGTGGGTGAACCACTTTTCCGACAGCAAGTTG 520 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 ||||||||||| |||| || || || | || || || || || || || | ||||| | Sbjct 519 TACGTCTCAATGGCTGCATCGATGTCTCTTTTGTGAATCCCGACGGCCACTCTCATTAGC 460 Query 72538 ATATGCTGAGGTCTTTCA 72555 || ||||| ||||| ||| Sbjct 459 ATGTGCTGGGGTCTCTCA 442 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| ||||| || || ||||| || || | || || ||||||| || ||| Sbjct 1332 ACTCGTTTCATGAAGAGGTCTGGGATCCACAGGGCGAAGAACAGGTCTCTGGCCCTCTGC 1273 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 ||||| || ||||| ||||| || | || | |||| | | | || |||||||||| Sbjct 1272 TCCTCTTTACCTGTGTTCTTCTTCATCTCTAAGAACTCAAACACGTCCAAATGCCACGGC 1213 Query 72142 TCCAAGTATATGGC 72155 |||| ||| | ||| Sbjct 1212 TCCAGGTACACGGC 1199 >seq408605 Length=286 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| || || |||||||| || || || || ||||||| ||||| || | Sbjct 42 CACTGAACACTTTCTTGGTCTCCTTGTGCAGGTTGGACACAGCTATTCGTGCGGCCAGGA 101 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 | || || || || || | || || ||||| || | ||||||||||| ||||||| Sbjct 102 TTGCGTAGTCAGGGTGGTTGGTGGTGAGGGTGGCGGCGGTCTCTGCTGCCAGGGTGTCCA 161 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || || || || |||| | ||| | || ||||| |||||||| Sbjct 162 GCTCCACGGTGGTGACTCTGTCATAAAGACCCTGGATCACCTTCAT 207 >seq231358 Length=2322 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || || | || ||||| || || || |||||||| ||||| | ||| | Sbjct 628 CCTCGTCTCTGCTGATGAGCTCATTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 687 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | || || || ||||| ||||||||||| || || || || |||| Sbjct 688 TCAGCCAGAAGATGGCAGCGAAGGACCCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGG 747 Query 42207 CAATAAGTCTCTCTCC 42222 | | | || |||||| Sbjct 748 CCACCACTCGCTCTCC 763 >seq28532 Length=8763 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| || ||||| | || ||||| || || || |||||||||| ||| | ||| | Sbjct 1945 CCTCATCCCTGCTAATCAGCTCATTGGAGAAGGTAAGCCCGGGCATTAAGCCTCTCTTCT 1886 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||||| || | || || || || || ||||||||||| || || || ||||| | Sbjct 1885 TCAGCCAAAAGATGGCAGCGAACGAACCGGAGAAGAAGATTCCCTCCACGGCAGCAAAAG 1826 Query 42207 C 42207 | Sbjct 1825 C 1825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666730637601520