Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq44246 408 6e-109
seq388653 122 1e-22
seq408606 93.3 6e-14
seq103378 91.5 2e-13
seq408605 87.8 2e-12
seq231358 87.8 2e-12
seq28532 87.8 2e-12
>seq44246
Length=4029
Score = 408 bits (452), Expect = 6e-109
Identities = 995/1496 (67%), Gaps = 11/1496 (1%)
Strand=Plus/Minus
Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467
|||| ||||| || || ||||| | || | || || ||||| || || |||| | |
Sbjct 1492 CGGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGT 1433
Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527
| || || || || ||||| ||||| || ||| | || || || ||||| || |
Sbjct 1432 TCAGCAGCTGGGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCA 1373
Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587
|| || ||||| |||||||| || ||||| | ||| || || || || || || |
Sbjct 1372 GGCCCTGGACGCCGATACCGATCGGCCTGTGGCGCTTGTTGGACTGATCGGCCTCGGGCA 1313
Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACAT 71647
|| || | ||||| ||||| || || || || || | || || |||||| ||||
Sbjct 1312 CCGGGTAGAAGTTAATCTCTATGATCTTGTTCAGGTTCTTCACGATCACTTTGGTCACAG 1253
Query 71648 CCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAG 71704
|| ||||| || ||||| ||| || | || ||| ||| | || | |
Sbjct 1252 ACTCCAGTTTCTTGAAGTCAAAAGTCCGCTCGGGGGTGACGTACATGTTGAGAGCGATGG 1193
Query 71705 ATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAA 71764
| ||||||||||| || || ||||||| || || |||| | ||||| ||||| |
Sbjct 1192 AGGCCAGATTACACACAGCGACCTCATCGCCACTGGAGTATTCAACGATTTCCGTGCAGA 1133
Query 71765 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 71824
| || || |||||||||||||| | || || || || ||||| |||| || || || |
Sbjct 1132 GGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTT 1073
Query 71825 TATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 71884
| || || || |||| || || | || |||| || || || || || | ||| ||
Sbjct 1072 TGTACAGCATGTACGGCGTGCCCGACTCCGTCTGGGACTCGATGATGGCGTGCCACACCT 1013
Query 71885 CTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTT 71944
||||||| | | | |||| | || | || ||||| || || | |
Sbjct 1012 GCTGAGCCTTCACCACACGCTTGACCCGGCCCTCCCGCTCATATTGGGTGTAGAGCTTCT 953
Query 71945 CGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003
| ||||| || ||||| ||| | ||| | || || | || | |||||||||| |||
Sbjct 952 CAAACTCCTCCCCCCA-GCACTCGTCCAGCCCGGGGCTCTCGCTGGGACACATCAGAGAC 894
Query 72004 CACTC-TCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 72061
|| || | | || | || | ||||| || || || || ||||| | ||| || |
Sbjct 893 CAGTCCTGGTTGCTC-TCCACCCTCTTCATGAACAGGTCGGGGATCCACA-AGCCGTAGA 836
Query 72062 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 72121
| |||||||||| ||| |||||||| || || || ||||| || || || ||||| | |
Sbjct 835 AGAGATCTCTGGCTCTCTGCTCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGA 776
Query 72122 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTC 72181
| ||| | |||||||| |||| ||| ||||| | | || || || ||||| || |
Sbjct 775 ACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGTCGCTTGTTGCCGC 716
Query 72182 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 72241
|||| || | || | || ||||| || || || |||| ||| || | | || ||||
Sbjct 715 CCTGGTCGACATAGCGTGCTGTGTTGTTGTAGACCCTCAGCATGGGGACCAGCCCGTTGG 656
Query 72242 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGAC 72301
| || ||||| |||| ||| ||||| || ||| || || ||| | | | ||
Sbjct 655 AGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTGGATCGGATGCAGCTGACGGCCACAC 596
Query 72302 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 72361
| ||||| |||||| || ||||| | ||| || | || | ||| || ||||||||||
Sbjct 595 CGATTCCTCCTGCCGACTTGGAGATGAGTGCACACTGCTTCAGCGTGTCGTAGATGCCCT 536
Query 72362 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 72421
| || || || ||| ||||| | || || || ||||| || | || | || | ||||
Sbjct 535 CGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGAGAGCTGAGGCCGGTTGGTTC 476
Query 72422 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 72481
| || || || | || || || ||||| || ||||| || || || || || ||||| |
Sbjct 475 CTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCCGAGAGCAGGTTGTAGG 416
Query 72482 TCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATAT 72541
|||| || || | || |||||| | || ||||| |||| || | ||| | ||| |
Sbjct 415 TCTCGATGGCGGCGTCGATATCCGTCTTGTGGATTCCGACCGACACCCTCATGAGCATGT 356
Query 72542 GCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 72601
|||| || | || | | ||| || || |||| || ||||||| |||| || |
Sbjct 355 GCTGCGGCCGCTCCGCCACTTTGCCGTTGATCTTCAGCAGGTAGGATCGCTCCAGCGTCT 296
Query 72602 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTAT 72661
| || || || ||||||| || || |||| ||| | || || |||| ||||| |
Sbjct 295 TGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGAAGATGATGGCCGAGTTGAGGCGGT 236
Query 72662 CCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCA 72720
|||| | | ||| || || | ||| | ||| || || || || || || |
Sbjct 235 CCTTGTGGGCGAGAACGATGTCGAGGGT-CTCCTTGGAGATCATGGGGGAGTGGCGTCTG 177
Query 72721 TTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTT 72780
|| ||| || | ||| || | | ||||||||||| ||||| || | || || ||
Sbjct 176 TTCAGAGGGTTGATGTAGCTGTACAGGTCCTCCATCACCTCACTGAAAACCTTCTTCGTC 117
Query 72781 TCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGT 72840
|||||||| || || || ||||| || | |||||| || ||||| || || || ||||
Sbjct 116 TCCTTGTGCAGGTTGGAGACGGCGATCCGGGCGGCGAGGATGGCGTAGTCCGGGTGTTTG 57
Query 72841 GTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTAC 72896
|| || ||||| | || ||||| ||||| ||||||| || || || || ||
Sbjct 56 GTGGTGAGGGTGGCGGTGATCTCTGCAGCCAGGGTGTCCAGCTCCACGGTGGTGAC 1
>seq388653
Length=382
Score = 122 bits (134), Expect = 1e-22
Identities = 252/364 (69%), Gaps = 12/364 (3%)
Strand=Plus/Minus
Query 71714 TACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCA-AAGATT-ACT 71771
|||| || ||||| |||| || | || |||| || || || || || ||| || ||
Sbjct 382 TACACACTGCTACTTCATCAGGAGAGGTGTATTCCATGATCTCTGTACACAAGTTTGACG 323
Query 71772 ACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 71831
| || || ||||||||||| | ||| || || ||| |||||| ||||| |
Sbjct 322 A-ACGA-ATAGTTCCTAAATTCTTTTGGTTTGATTTACGGTTTGCCGCATCTTTATATAA 265
Query 71832 AATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC-CAGACGACTCGAG 71890
||| ||||||| ||||| || || |||||||||| ||| |||| | || | || |
Sbjct 264 CATATACGGAGTTCCAGTCTCGATTTGAGATTCTAGAAT---TTTCTCCCACAATTCATG 208
Query 71891 C-CTTTATTATATTCTTGTATCTCTTTTCTCTTTC--GTATTGTGTATATAATCGTTCGA 71947
||||| | | || || || || || ||||| ||| | ||||||| ||| |
Sbjct 207 TGCTTTAAT-TGTTTTTCTACCTTTTCCAGCTTTCTCGTAGCTTTCATATAATGCTTCAA 149
Query 71948 ACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACT 72007
|||| || || || ||| || |||||||||||||| || |||||||| || | ||| |
Sbjct 148 ACTCTTCACCATAAACATCGTACAATCCAGGACATTCGTTAGGACACATTAAAGTCCAGT 89
Query 72008 CTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 72067
||| || || | ||| |||||||| || | ||||| | |||| | || | |||| ||
Sbjct 88 TTCCGTCTTCTTGTACACGTTTCATGAATAAATCAGAAGTCCACATGGCAAAGAATAAAT 29
Query 72068 CTCT 72071
||||
Sbjct 28 CTCT 25
>seq408606
Length=282
Score = 93.3 bits (102), Expect = 6e-14
Identities = 120/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820
|||| || | ||| || || |||||||| || || || || ||||||| ||||| || |
Sbjct 42 CACTGAACACTTTCTTGGTCTCCTTGTGCAGGTTGGACACAGCTATTCGTGCGGCCAGGA 101
Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880
| || || || || || | || || ||||| ||| | ||||||||||| |||||||
Sbjct 102 TTGCGTAGTCAGGGTGGTTGGTGGTGAGGGTGGCGGCTGTCTCTGCTGCCAGGGTGTCCA 161
Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926
|| || || || |||| | ||| | || ||||| ||||||||
Sbjct 162 GCTCCACGGTGGTGACTCTGTCATAAAGACCCTGGATCACCTTCAT 207
>seq103378
Length=1867
Score = 91.5 bits (100), Expect = 2e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477
|| || ||||| || | ||||| || ||||| || ||||| ||||| ||||| | |||
Sbjct 579 GTGCCGGCATTGAACAGTGTAGGTGAGGCGTGGGTGAACCACTTTTCCGACAGCAAGTTG 520
Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537
||||||||||| |||| || || || | || || || || || || || | ||||| |
Sbjct 519 TACGTCTCAATGGCTGCATCGATGTCTCTTTTGTGAATCCCGACGGCCACTCTCATTAGC 460
Query 72538 ATATGCTGAGGTCTTTCA 72555
|| ||||| ||||| |||
Sbjct 459 ATGTGCTGGGGTCTCTCA 442
Score = 84.2 bits (92), Expect = 3e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
||||||||||| ||||| || || ||||| || || | || || ||||||| || |||
Sbjct 1332 ACTCGTTTCATGAAGAGGTCTGGGATCCACAGGGCGAAGAACAGGTCTCTGGCCCTCTGC 1273
Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141
||||| || ||||| ||||| || | || | |||| | | | || ||||||||||
Sbjct 1272 TCCTCTTTACCTGTGTTCTTCTTCATCTCTAAGAACTCAAACACGTCCAAATGCCACGGC 1213
Query 72142 TCCAAGTATATGGC 72155
|||| ||| | |||
Sbjct 1212 TCCAGGTACACGGC 1199
>seq408605
Length=286
Score = 87.8 bits (96), Expect = 2e-12
Identities = 119/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820
|||| || | ||| || || |||||||| || || || || ||||||| ||||| || |
Sbjct 42 CACTGAACACTTTCTTGGTCTCCTTGTGCAGGTTGGACACAGCTATTCGTGCGGCCAGGA 101
Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880
| || || || || || | || || ||||| || | ||||||||||| |||||||
Sbjct 102 TTGCGTAGTCAGGGTGGTTGGTGGTGAGGGTGGCGGCGGTCTCTGCTGCCAGGGTGTCCA 161
Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926
|| || || || |||| | ||| | || ||||| ||||||||
Sbjct 162 GCTCCACGGTGGTGACTCTGTCATAAAGACCCTGGATCACCTTCAT 207
>seq231358
Length=2322
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||| ||||| || || | || ||||| || || || |||||||| ||||| | ||| |
Sbjct 628 CCTCGTCTCTGCTGATGAGCTCATTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 687
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||| || || | || || || ||||| ||||||||||| || || || || ||||
Sbjct 688 TCAGCCAGAAGATGGCAGCGAAGGACCCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGG 747
Query 42207 CAATAAGTCTCTCTCC 42222
| | | || ||||||
Sbjct 748 CCACCACTCGCTCTCC 763
>seq28532
Length=8763
Score = 87.8 bits (96), Expect = 2e-12
Identities = 92/121 (76%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
||||||| || ||||| | || ||||| || || || |||||||||| ||| | ||| |
Sbjct 1945 CCTCATCCCTGCTAATCAGCTCATTGGAGAAGGTAAGCCCGGGCATTAAGCCTCTCTTCT 1886
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| |||||||| || | || || || || || ||||||||||| || || || ||||| |
Sbjct 1885 TCAGCCAAAAGATGGCAGCGAACGAACCGGAGAAGAAGATTCCCTCCACGGCAGCAAAAG 1826
Query 42207 C 42207
|
Sbjct 1825 C 1825
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 666730637601520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |