Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_004456.1 Length=43198 Score E Sequences producing significant alignments: (Bits) Value seq503395 241 4e-59 >seq503395 Length=393 Score = 241 bits (266), Expect = 4e-59 Identities = 290/394 (74%), Gaps = 1/394 (0%) Strand=Plus/Minus Query 27327 TGACGATCATTGCTACGGACGGCTATCGCAAAGCGGTCGAGCATAATWCAGGCGGTCGAA 27386 |||| || || || || |||||||| ||||| ||||||| ||| | |||||||| | Sbjct 393 TGACCATTATCGCCACCGACGGCTACAAAAAAGCTATCGAGCACAATTCTGGCGGTCGCA 334 Query 27387 ACACAGTCATTTATGATGCCCAGGGCAACCCTAATATCATGTGCGTCATCCCGCGCTTCA 27446 | || || | ||||| || ||||| || ||||| || |||||||| ||||||||||||| Sbjct 333 ATACCGTGGTGTATGACGCTCAGGGTAATCCTAACATTATGTGCGTTATCCCGCGCTTCA 274 Query 27447 ACATTGAAGACCTGGGATTAACAGAGCTTGATCTTGGCACAGGTGTTCACCCTGCATTTG 27506 | ||||||||||| || | || | | ||||||||||| ||||||||||| || Sbjct 273 ATATTGAAGACCTAGGGCTGGTTGACTTAAACCTTGGCACAGGGGTTCACCCTGCGTTCC 214 Query 27507 TAACGAACGGAGCGCCTCGCGGCGAAATCCTTGTCGGCAAATATCTGGCGTCATCGGCGG 27566 ||| ||||| | || ||||| || || | ||||||| ||| |||| ||| | | | Sbjct 213 -AACTAACGGCGTACCCCGCGGTGAGATATTAATCGGCAAGTATTTGGCCTCAACAACTG 155 Query 27567 CGGGCGGCTCTGCCGTTATCGGTGGCCCTCAGCCGCGAACCTCAGTTAACTACGACACTG 27626 || || || || || |||||| |||||||| ||||||| |||||| | | Sbjct 154 CGAATGGTAGCGCAGTCATTGGTGGCGTCCAGCCGCGCGTATCAGTTAGCTACGATGCAG 95 Query 27627 CAAAACAGCTTTGCACGCAAAAGGGTGACAACTGGCACCTTATGTCGATTCACGAGTGGG 27686 ||||| |||| ||||||| || || | || |||||| | ||||| | |||||||||| Sbjct 94 CAAAAGAGCTGTGCACGCGCAAAGGCGCAAATTGGCACATGATGTCAGTGCACGAGTGGG 35 Query 27687 CCGCCATTGCACTCTGGTCTCTGGCTAATGGTAC 27720 |||| ||||| || ||||| || |||||||| || Sbjct 34 CCGCTATTGCGCTATGGTCCCTCGCTAATGGAAC 1 Lambda K H 0.635 0.409 0.914 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137250134679840