Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_004665.1 Length=37359 Score E Sequences producing significant alignments: (Bits) Value seq512931 385 1e-102 seq524349 178 3e-40 seq521066 163 7e-36 seq500082 156 1e-33 >seq512931 Length=538 Score = 385 bits (426), Expect = 1e-102 Identities = 404/529 (76%), Gaps = 18/529 (3%) Strand=Plus/Plus Query 35248 CCTGACCACTCGCCCTCTGTGAAGTCTGTAGGTATCACCGGCCAGTTGACTGGTAGCCGT 35307 ||||||||| ||||| |||||||| || ||| | || ||| |||||||||||||| Sbjct 10 CCTGACCACAGCCCCTCGGTGAAGTCCGTGGGTGTTACTGGCGGTATGACTGGTAGCCGT 69 Query 35308 GCTGACATCCTCATTGCGGACGACGTTGAGGTTCCCAACAACTCTGCCACTCAGACCGCC 35367 |||||||||||||||||||| ||||||||||| ||| |||||||| ||| ||| |||| Sbjct 70 GCTGACATCCTCATTGCGGATGACGTTGAGGTCCCCGGCAACTCTGGCACACAGTCCGCA 129 Query 35368 CGAGATCACCTCGGAGAGCTGGTGAAGGAGTTCGATGCGATCCTGAAGCCGGGTGGTACG 35427 | |||||||| || |||||||| ||||| |||||||||||||||||||| | |||||| Sbjct 130 AGGGATCACCTTGGCGAGCTGGTAAAGGAATTCGATGCGATCCTGAAGCCTGACGGTACG 189 Query 35428 ATCATCTATCTGGGAACCCCTCAGACCGAGATGACCCTCTACCGCGAGCTGGAAGGCCGT 35487 |||||||| |||||||||| |||||||| |||||||||||| | || || || | ||| Sbjct 190 ATCATCTACTTGGGAACCCCACAGACCGAAATGACCCTCTACAGGGAACTTGAGGACCGC 249 Query 35488 GGATACGTCACAACGATCTGGCCTGCAAGATACCCTAAAGACCAAGCTGACTGGGACTCC 35547 || ||| || ||||||||||||||| |||||||| || |||||| || ||| Sbjct 250 GGCTACTCGACGACGATCTGGCCTGCACGATACCCTCGGGATGTGGCTGACCTTGAGTCC 309 Query 35548 TA-TG----GCCCACGGCTGGCTCCTATG-CTGG--------CTGCT----GAGCTACAG 35589 || || ||| | ||| || | | | |||| |||| ||||| | Sbjct 310 TACTGGCACGCCAAGGGCAAGCGCTCACGTCTGGACCTTACCATGCTCAAGGAGCTGGAA 369 Query 35590 GCAGATGGTTCCCTGTTCTGGGCACCGACTGACGAGGTTCGCTTCGATGACAAGGACCTG 35649 | || | ||||||||| || || ||| |||| |||||||| | |||||| Sbjct 370 GACGACGAGAAGCTGTTCTGGAAGCCTACAGACCCTATTCGATTCGATGATGAAGACCTG 429 Query 35650 CGTGAGCGGGAACTGTCCTACGGCAAGGGTGGCTTCGCACTTCAGTTCATGCTCAACCCG 35709 |||||||| ||||| || || ||||||||||||||||| || |||||||||||||||||| Sbjct 430 CGTGAGCGCGAACTCTCATATGGCAAGGGTGGCTTCGCTCTACAGTTCATGCTCAACCCG 489 Query 35710 AACCTCTCCGACATGGAGAAGTACCCTCTCAAGCTGCGTGACTTCATCG 35758 ||||| |||||| ||||||||||| | ||||||||||| | |||| Sbjct 490 AACCTTAGCGACATCGAGAAGTACCCGTTGAAGCTGCGTGATTGGATCG 538 >seq524349 Length=315 Score = 178 bits (196), Expect = 3e-40 Identities = 199/266 (75%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 10603 TGGAATGCCCAGCCGTTCGTGCCCGATGGGGTCGTCTCTGCGAAGTCCCTAAAGGCCCGC 10662 ||||| |||||| || ||| || ||||| || ||||| ||||||| ||| |||| |||| Sbjct 10 TGGAACGCCCAGAAGTACGTCCCTGATGGTGTGGTCTCGGCGAAGTACCTTAAGGGCCGC 69 Query 10663 TTGAAGGAGAAGAAGGTGATCCCTTCGCTTCCTCTGGTGGCCCCTCACGAACTCAAGAAG 10722 | || || |||||||| ||| ||||| | ||| |||||| |||||||| || Sbjct 70 ATCAAAGAAAAGAAGGTTATCACTTCGATGCCTTTGGTGGGACCTCACGAGCTGTCCCGC 129 Query 10723 ATGACCAAGGACTGCCGTGGTGGTGAGGTGATCCTCGTGACCTCTGGCAGTGGCTCGGGC 10782 ||||||||| || ||| | || || || || || || ||||| ||| ||||||||| Sbjct 130 ATGACCAAGAACATCCGCGAAGGCGAAGTCATTCTGGTCACCTCGGGCTCCGGCTCGGGC 189 Query 10783 AAGTCCACCTTCGTGCGTCAGAACGTCTACAACCTGTTCCACAACGAGTCCATTCCGTGT 10842 |||||||| ||||| || |||||| ||||||| | ||||| | | | | || ||| Sbjct 190 AAGTCCACGTTCGTCCGACAGAACACCTACAACGTCTTCCATGAGGCGACGATCCCGGTG 249 Query 10843 GGCGTTGCCATGCTGGAGGAAGCCGT 10868 |||||||| ||||| |||||| |||| Sbjct 250 GGCGTTGCGATGCTTGAGGAATCCGT 275 >seq521066 Length=280 Score = 163 bits (180), Expect = 7e-36 Identities = 175/231 (76%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 17681 CATGGAAGCCAACAGCTACCGAGTGACGCTCTTTGAGTTGATCCGTCAGTTGGCCCTTGC 17740 ||||||||||||||| ||||| ||| | ||| |||| |||||||||| | || Sbjct 1 CATGGAAGCCAACAGTTACCGCACCACGTTGCACGAGCTGATTCGTCAGTTGGTGATCGC 60 Query 17741 AGGCACCGCTCTGATCTACCTACCACCACCTGACGCCTCGTCCAATTCGTACAACCCGAT 17800 || | | ||| | ||||| || || ||||| | ||| || | | | ||| || Sbjct 61 TGGGTCTGGCCTGCTGTACCTTCCGCCTCCTGAGGGTTCGACCCAAGGG---AGCCCTAT 117 Query 17801 GAAGCTCTACACGCTCCACAACCATGTGGTCCAGCGTGATGCCTTCGGGAACGTCTTGCA 17860 ||||||||||||||| |||||||| || ||||| || || |||||||||||||| | || Sbjct 118 GAAGCTCTACACGCTGCACAACCACGTAGTCCAACGGGACTCCTTCGGGAACGTCCTACA 177 Query 17861 GATCGTGACGCTCGACAAGGTGGCCTATGCGGCACTCCCAGAGGACGTTCG 17911 |||||| ||||||||||||||||||| |||||| || || || ||||| || Sbjct 178 GATCGTTACGCTCGACAAGGTGGCCTTTGCGGCCCTTCCTGAAGACGTGCG 228 >seq500082 Length=313 Score = 156 bits (172), Expect = 1e-33 Identities = 205/284 (72%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 2438 TGGCTGATGATCCACGGTGCGAACTGTGCCGGGGTCGATAAGGTTGACTTCAGCCAGCGC 2497 ||||| ||||| ||||| || ||| ||| |||||||||||||| ||| || ||| Sbjct 297 TGGCTCATGATTCACGGGGCCAACACTGCTGGGGTCGATAAGGTCCCTTTCGATCAACGC 238 Query 2498 AAGCAGTGGATCAAGGACAACGAGGAAATGATTCTTCGCTGTGCCCACGACCCGCTCATC 2557 ||||| ||| | ||||| || | || || || || || | |||||||||| Sbjct 237 AAGCAATGGGTTCGTGACAATGAATCGACTATCCTCCGATGCGCTGAAGACCCGCTCACT 178 Query 2558 AACACCGACTGGATGGACATGGATTCGCCCTTCTGCTTCTTGGCGTTCTGCTTCGAGTGG 2617 ||||||| ||||||| ||||| ||||||||||| |||||||||||||||||||||||| Sbjct 177 CACACCGAGTGGATGGGGATGGACTCGCCCTTCTGTTTCTTGGCGTTCTGCTTCGAGTGG 118 Query 2618 CAAGGTGTGAAGCTCCACGGGGAAGCCCATGTGTCCGCCCTGCCGATTGCCTTCGACGGT 2677 ||||| | | | || | || || ||||| || || || || || ||||| Sbjct 117 GCCGGTGTCGTTCGCGATGGAGCTGCACACCGATCCGCTCTACCAATCGCTTTTGACGGA 58 Query 2678 TCTTGCTCGGGCATTCAGCACTTCTCTGCGATGCTCCGTGATGA 2721 || ||||| || ||||| || ||||| |||||||| || || Sbjct 57 AGCTGTTCGGGTATCCAGCATTTTTCTGCCATGCTCCGGGACGA 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118681934114604