Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_004665.1
Length=37359
Score E
Sequences producing significant alignments: (Bits) Value
seq512931 385 1e-102
seq524349 178 3e-40
seq521066 163 7e-36
seq500082 156 1e-33
>seq512931
Length=538
Score = 385 bits (426), Expect = 1e-102
Identities = 404/529 (76%), Gaps = 18/529 (3%)
Strand=Plus/Plus
Query 35248 CCTGACCACTCGCCCTCTGTGAAGTCTGTAGGTATCACCGGCCAGTTGACTGGTAGCCGT 35307
||||||||| ||||| |||||||| || ||| | || ||| ||||||||||||||
Sbjct 10 CCTGACCACAGCCCCTCGGTGAAGTCCGTGGGTGTTACTGGCGGTATGACTGGTAGCCGT 69
Query 35308 GCTGACATCCTCATTGCGGACGACGTTGAGGTTCCCAACAACTCTGCCACTCAGACCGCC 35367
|||||||||||||||||||| ||||||||||| ||| |||||||| ||| ||| ||||
Sbjct 70 GCTGACATCCTCATTGCGGATGACGTTGAGGTCCCCGGCAACTCTGGCACACAGTCCGCA 129
Query 35368 CGAGATCACCTCGGAGAGCTGGTGAAGGAGTTCGATGCGATCCTGAAGCCGGGTGGTACG 35427
| |||||||| || |||||||| ||||| |||||||||||||||||||| | ||||||
Sbjct 130 AGGGATCACCTTGGCGAGCTGGTAAAGGAATTCGATGCGATCCTGAAGCCTGACGGTACG 189
Query 35428 ATCATCTATCTGGGAACCCCTCAGACCGAGATGACCCTCTACCGCGAGCTGGAAGGCCGT 35487
|||||||| |||||||||| |||||||| |||||||||||| | || || || | |||
Sbjct 190 ATCATCTACTTGGGAACCCCACAGACCGAAATGACCCTCTACAGGGAACTTGAGGACCGC 249
Query 35488 GGATACGTCACAACGATCTGGCCTGCAAGATACCCTAAAGACCAAGCTGACTGGGACTCC 35547
|| ||| || ||||||||||||||| |||||||| || |||||| || |||
Sbjct 250 GGCTACTCGACGACGATCTGGCCTGCACGATACCCTCGGGATGTGGCTGACCTTGAGTCC 309
Query 35548 TA-TG----GCCCACGGCTGGCTCCTATG-CTGG--------CTGCT----GAGCTACAG 35589
|| || ||| | ||| || | | | |||| |||| ||||| |
Sbjct 310 TACTGGCACGCCAAGGGCAAGCGCTCACGTCTGGACCTTACCATGCTCAAGGAGCTGGAA 369
Query 35590 GCAGATGGTTCCCTGTTCTGGGCACCGACTGACGAGGTTCGCTTCGATGACAAGGACCTG 35649
| || | ||||||||| || || ||| |||| |||||||| | ||||||
Sbjct 370 GACGACGAGAAGCTGTTCTGGAAGCCTACAGACCCTATTCGATTCGATGATGAAGACCTG 429
Query 35650 CGTGAGCGGGAACTGTCCTACGGCAAGGGTGGCTTCGCACTTCAGTTCATGCTCAACCCG 35709
|||||||| ||||| || || ||||||||||||||||| || ||||||||||||||||||
Sbjct 430 CGTGAGCGCGAACTCTCATATGGCAAGGGTGGCTTCGCTCTACAGTTCATGCTCAACCCG 489
Query 35710 AACCTCTCCGACATGGAGAAGTACCCTCTCAAGCTGCGTGACTTCATCG 35758
||||| |||||| ||||||||||| | ||||||||||| | ||||
Sbjct 490 AACCTTAGCGACATCGAGAAGTACCCGTTGAAGCTGCGTGATTGGATCG 538
>seq524349
Length=315
Score = 178 bits (196), Expect = 3e-40
Identities = 199/266 (75%), Gaps = 0/266 (0%)
Strand=Plus/Plus
Query 10603 TGGAATGCCCAGCCGTTCGTGCCCGATGGGGTCGTCTCTGCGAAGTCCCTAAAGGCCCGC 10662
||||| |||||| || ||| || ||||| || ||||| ||||||| ||| |||| ||||
Sbjct 10 TGGAACGCCCAGAAGTACGTCCCTGATGGTGTGGTCTCGGCGAAGTACCTTAAGGGCCGC 69
Query 10663 TTGAAGGAGAAGAAGGTGATCCCTTCGCTTCCTCTGGTGGCCCCTCACGAACTCAAGAAG 10722
| || || |||||||| ||| ||||| | ||| |||||| |||||||| ||
Sbjct 70 ATCAAAGAAAAGAAGGTTATCACTTCGATGCCTTTGGTGGGACCTCACGAGCTGTCCCGC 129
Query 10723 ATGACCAAGGACTGCCGTGGTGGTGAGGTGATCCTCGTGACCTCTGGCAGTGGCTCGGGC 10782
||||||||| || ||| | || || || || || || ||||| ||| |||||||||
Sbjct 130 ATGACCAAGAACATCCGCGAAGGCGAAGTCATTCTGGTCACCTCGGGCTCCGGCTCGGGC 189
Query 10783 AAGTCCACCTTCGTGCGTCAGAACGTCTACAACCTGTTCCACAACGAGTCCATTCCGTGT 10842
|||||||| ||||| || |||||| ||||||| | ||||| | | | | || |||
Sbjct 190 AAGTCCACGTTCGTCCGACAGAACACCTACAACGTCTTCCATGAGGCGACGATCCCGGTG 249
Query 10843 GGCGTTGCCATGCTGGAGGAAGCCGT 10868
|||||||| ||||| |||||| ||||
Sbjct 250 GGCGTTGCGATGCTTGAGGAATCCGT 275
>seq521066
Length=280
Score = 163 bits (180), Expect = 7e-36
Identities = 175/231 (76%), Gaps = 3/231 (1%)
Strand=Plus/Plus
Query 17681 CATGGAAGCCAACAGCTACCGAGTGACGCTCTTTGAGTTGATCCGTCAGTTGGCCCTTGC 17740
||||||||||||||| ||||| ||| | ||| |||| |||||||||| | ||
Sbjct 1 CATGGAAGCCAACAGTTACCGCACCACGTTGCACGAGCTGATTCGTCAGTTGGTGATCGC 60
Query 17741 AGGCACCGCTCTGATCTACCTACCACCACCTGACGCCTCGTCCAATTCGTACAACCCGAT 17800
|| | | ||| | ||||| || || ||||| | ||| || | | | ||| ||
Sbjct 61 TGGGTCTGGCCTGCTGTACCTTCCGCCTCCTGAGGGTTCGACCCAAGGG---AGCCCTAT 117
Query 17801 GAAGCTCTACACGCTCCACAACCATGTGGTCCAGCGTGATGCCTTCGGGAACGTCTTGCA 17860
||||||||||||||| |||||||| || ||||| || || |||||||||||||| | ||
Sbjct 118 GAAGCTCTACACGCTGCACAACCACGTAGTCCAACGGGACTCCTTCGGGAACGTCCTACA 177
Query 17861 GATCGTGACGCTCGACAAGGTGGCCTATGCGGCACTCCCAGAGGACGTTCG 17911
|||||| ||||||||||||||||||| |||||| || || || ||||| ||
Sbjct 178 GATCGTTACGCTCGACAAGGTGGCCTTTGCGGCCCTTCCTGAAGACGTGCG 228
>seq500082
Length=313
Score = 156 bits (172), Expect = 1e-33
Identities = 205/284 (72%), Gaps = 0/284 (0%)
Strand=Plus/Minus
Query 2438 TGGCTGATGATCCACGGTGCGAACTGTGCCGGGGTCGATAAGGTTGACTTCAGCCAGCGC 2497
||||| ||||| ||||| || ||| ||| |||||||||||||| ||| || |||
Sbjct 297 TGGCTCATGATTCACGGGGCCAACACTGCTGGGGTCGATAAGGTCCCTTTCGATCAACGC 238
Query 2498 AAGCAGTGGATCAAGGACAACGAGGAAATGATTCTTCGCTGTGCCCACGACCCGCTCATC 2557
||||| ||| | ||||| || | || || || || || | ||||||||||
Sbjct 237 AAGCAATGGGTTCGTGACAATGAATCGACTATCCTCCGATGCGCTGAAGACCCGCTCACT 178
Query 2558 AACACCGACTGGATGGACATGGATTCGCCCTTCTGCTTCTTGGCGTTCTGCTTCGAGTGG 2617
||||||| ||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 177 CACACCGAGTGGATGGGGATGGACTCGCCCTTCTGTTTCTTGGCGTTCTGCTTCGAGTGG 118
Query 2618 CAAGGTGTGAAGCTCCACGGGGAAGCCCATGTGTCCGCCCTGCCGATTGCCTTCGACGGT 2677
||||| | | | || | || || ||||| || || || || || |||||
Sbjct 117 GCCGGTGTCGTTCGCGATGGAGCTGCACACCGATCCGCTCTACCAATCGCTTTTGACGGA 58
Query 2678 TCTTGCTCGGGCATTCAGCACTTCTCTGCGATGCTCCGTGATGA 2721
|| ||||| || ||||| || ||||| |||||||| || ||
Sbjct 57 AGCTGTTCGGGTATCCAGCATTTTTCTGCCATGCTCCGGGACGA 14
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 118681934114604
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |