Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_004777.1 Length=37555 Score E Sequences producing significant alignments: (Bits) Value seq515320 100 7e-17 seq512931 98.7 2e-16 >seq515320 Length=237 Score = 100 bits (110), Expect = 7e-17 Identities = 128/175 (73%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 11113 CTACGTGGTTCTGGCGCATTACGCCAACTATCTGATACTATTATTGCCCTTGAGCGTAAT 11172 || |||||||| || || | ||||| || |||||| |||| ||| ||||| | ||| Sbjct 16 CTTCGTGGTTCAGGTTCAATTGCTCAACTCTCAGATACTGTTATAGCCTTTGAGAGGAAT 75 Query 11173 CAGCAAGGCGATATGCCTAACCTTGTCCTCGTTCGTATTCTCAAGTGCCGCTTTACTGGT 11232 |||||||| | |||||| ||| | | | || | ||||| |||||||| ||| Sbjct 76 CAGCAAGGGAGCAGTCCTAACAAGGTCTTGATAAGAATCTTAAAGTGTCGCTTTACAGGT 135 Query 11233 TATA-CTGGTATCGCTGGCTACATGGAATACAACAAGGAAACAGGATGGCTTGAA 11286 | | ||||||| || |||||| || | ||||| ||||||| |||||||||||| Sbjct 136 GAAAACTGGTATAGCAGGCTACTTGAATTACAATCAGGAAACTGGATGGCTTGAA 190 >seq512931 Length=538 Score = 98.7 bits (108), Expect = 2e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 35777 CCAACAGACCCCGTGCGCTTCGACCGTGATGACCTACGTGAGCGTGAGTTGGAATACGGT 35836 || |||||||| | || ||||| ||| ||||| |||||||| || | ||| || Sbjct 394 CCTACAGACCCTATTCGATTCGATGATGAAGACCTGCGTGAGCGCGAACTCTCATATGGC 453 Query 35837 AAGGCTGGCTTTACGTTACAGTTCATGCTTAACCCGAACCTGAGTGATGCCGAGAAGTAC 35896 |||| |||||| | ||||||||||||| ||||||||||| || || |||||||||| Sbjct 454 AAGGGTGGCTTCGCTCTACAGTTCATGCTCAACCCGAACCTTAGCGACATCGAGAAGTAC 513 Query 35897 CCTCTGAGGCTCCGTGA 35913 || ||| ||| ||||| Sbjct 514 CCGTTGAAGCTGCGTGA 530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119305220175708