Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_004928.1 Length=167560 Score E Sequences producing significant alignments: (Bits) Value seq449735 197 1e-45 seq509673 136 4e-27 seq506238 127 2e-24 seq351952 102 9e-17 >seq449735 Length=3187 Score = 197 bits (218), Expect = 1e-45 Identities = 486/734 (66%), Gaps = 5/734 (1%) Strand=Plus/Minus Query 141859 TTAGTTGGAATAGCGATTTCACAACATAAGTTACTCTGACGAATTGGAGCTTTTTCACGA 141918 |||||||| | || ||||| ||||||| ||| || ||||| || || || | | Sbjct 755 TTAGTTGGTAATGCAATTTCTAAACATAAATTAGATTGGCGAATAGGTGCCACTTTAGCA 696 Query 141919 ATAAACGGAGTGTAGTTATTCGTGTTATCAACAAACTGTGGATAAATTCGAGCAGTACCA 141978 || ||||| ||| |||| || ||||| ||| ||||| ||| | |||| Sbjct 695 ATGAACGGGCTGTGCGTATTACAGTGGTCAACGTTTTGTAAGTAAATACGACCGGTACTT 636 Query 141979 GAACGTTCAGTCATGAACAATTCAAAGAGTTCTAGTGCTTTGATTCTTTTCTTTCTGATT 142038 | |||||| | |||| | || ||||| | ||||| || | ||| || | ||| Sbjct 635 GCACGTTCTTGCGCAAACATTGAGAACAGTTCAATAGCTTTAATGCGTTTTTTACGAATT 576 Query 142039 GTTGGGTCTTTTTCAGCTTTCTCATAAAGCTCACGGAATTTATCTTGATCTTCAAAGAAT 142098 | | ||||| ||| ||| |||||||| | || | ||||| |||||||| ||| Sbjct 575 GATTCGTCTTGTTCGTATTTTACATAAAGCGCGTCAAACTCGTCTTGGTCTTCAAAAAAT 516 Query 142099 GAGTAATATAGTTCGCCTGACATTTCGTGAGGGCTAAATAAAGTAATATAATCATTTTTA 142158 | | || || ||||| || || |||||||| || ||||| || || | |||| Sbjct 515 GCATCGTAAAG---GCCTGGCACATCAGAGGGGCTAAACAAGGTAATGTAGTCGTCTTTA 459 Query 142159 CCAAGGCGTTCCATCATGAGGTCATTAATCTGAATTCCGTAGTCCATATGTCGAATACGG 142218 | || ||| || | ||||| ||| | ||||| || | ||| || | ||| Sbjct 458 ATTAAACGCGAGTACATTAGTTTATTAAACTGTACGCCGTAATCTAAATGACGCACGCGG 399 Query 142219 TTTTCATCCACGCCTTTGTTATTTTTCAGAACTAATAGGTTCTCTACTTCTAAGTGCCAC 142278 || ||||| || || ||||||||| || ||||| ||||| ||||||||||| ||||| Sbjct 398 TTGTCATCAACCCCGCGGTTATTTTTAAGTACTAACAGGTTTTCTACTTCTAAATGCCAA 339 Query 142279 ATTGGATAATACGCTGTAGCAGCACCACCACGAATACCACCTTGAGAACAAGATTTTACT 142338 | || || || || || || || ||||| | ||| ||||| ||||| ||| || Sbjct 338 AGCGGGTAGAACAAGGTTGCTGCGCCGCCACGTACACCGCCTTGCGAACAGCTTTTAACC 279 Query 142339 GCAGTTTGGAAATGTTTCCAGAATGGAATAACACCCGTATGTCGAACTTCACCCATACCG 142398 || ||||| || || || | || |||||| ||||||||| |||| || | | Sbjct 278 GCTGTTTGAAAGTGCTTATAAAAAGGAATACAACCCGTATGGTACGCTTCGCCATTGCGA 219 Query 142399 ATCTTAGAACCTTCTGCACGAAGCATACCAACGTTGATACCGATACCAGCTCGTTTAGAA 142458 || | ||| |||||||| ||| |||| || || || || || |||| || Sbjct 218 ATGTGGCTACCCAGTGCACGAATGCGACCTGCGTTAATGCCAATGCCGGCACGTTGCGAT 159 Query 142459 ATATATTCAATAATTGATGCTGAAGTTTTGTTAATAGATTTTAACGAATCACCGGCTTCA 142518 | |||| || ||||| | || || |||||| || | | || || || Sbjct 158 ACGTATTTAACAATTGCAGACGAGGTGGCGTTAATTGAATCAAGGCTGTCGCCACACTCT 99 Query 142519 ATAACTACACAACTAG-AGAACTGGCGAGTTGGAGTACGAGCACCTGCCATAATTGGGGT 142577 || | ||||| || || |||||||| ||||| |||||| |||||||||||||||| || Sbjct 98 ATTAATACAC-ACGAGCTAAACTGGCGTGTTGGCGTACGAACACCTGCCATAATTGGCGT 40 Query 142578 TGGCAATGAAACTT 142591 || | ||||| || Sbjct 39 AGGTAGTGAAATTT 26 >seq509673 Length=441 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142182 ATTAATCTGAATTCCGTAGTCCATATGTCGAATACGGTTTTCATCCACGCCTTTGTTATT 142241 ||| | ||| | ||||| |||||||| || | |||||| || |||||||| |||||| Sbjct 221 ATTTAACTGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATT 280 Query 142242 TTTCAGAACTAATAGGTTCTCTACTTCTAAGTGCCACATTGGATAATACGCTGTAGCAGC 142301 |||||| || |||| ||| |||||||| ||||| | ||| ||| || || || || Sbjct 281 TTTCAGTACCAATAATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGC 340 Query 142302 ACCACCACGAATACCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAA 142361 ||| ||||| | || ||||| || || |||| || ||||||||||| |||| |||| Sbjct 341 ACCGCCACGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAA 400 Query 142362 TGGAATAACACCCGTATG 142379 ||| ||| ||||||||| Sbjct 401 TGGGATACAACCCGTATG 418 >seq506238 Length=275 Score = 127 bits (140), Expect = 2e-24 Identities = 132/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 62073 TCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGA 62132 || ||||| ||||| | | ||||| |||| ||||| || || | |||||||| || Sbjct 49 TCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATGAGTTAAAACGC 108 Query 62133 ACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCA 62192 ||||| ||||| |||||||| || || | || ||||||||||| || || ||||| ||| Sbjct 109 ACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGTGTTTAACAGCA 168 Query 62193 TCTTCCAGAGTTTCGCGACGCAGAATGTTAACGTTCAGGTGTTGACCACCTTC 62245 ||||||| ||||| ||||| | | || ||||| | |||||||||||||| Sbjct 169 TCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCACCTTC 221 >seq351952 Length=416 Score = 102 bits (112), Expect = 9e-17 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 62063 TTATAGACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 62122 |||||| || | ||||||||||| | ||| || || ||| ||||| | ||| | || Sbjct 21 TTATAGCGTCGCTGTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGA 80 Query 62123 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 62182 |||||| || ||||| ||||| |||||||| || || | || ||||| || || |||| Sbjct 81 GTTAAATCGTACTGCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATT 140 Query 62183 CTTAACTGCATCTTCCAGAGTTTCGCGACGCAGAATGTTAACGTTCAGGTGTTGACCACC 62242 | | |||||| | |||| || || | |||||||| | |||||||||||| Sbjct 141 TTCCATTGCATCCAATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACC 200 Query 62243 TTCAAT 62248 |||||| Sbjct 201 TTCAAT 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532542716198400