Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_005066.1 Length=164018 Score E Sequences producing significant alignments: (Bits) Value seq449735 165 8e-36 seq509673 132 5e-26 seq351952 98.7 1e-15 seq506238 86.0 7e-12 >seq449735 Length=3187 Score = 165 bits (182), Expect = 8e-36 Identities = 496/753 (66%), Gaps = 27/753 (4%) Strand=Plus/Minus Query 135463 CCATCGGTTTAGTAGGCAGTGCAATTTCACAACACAGGTTAGATTGTTTAATCGGTGCTA 135522 ||| ||| ||||| || | ||||||||| |||| | |||||||| ||| ||||| | Sbjct 763 CCAACGGCTTAGTTGGTAATGCAATTTCTAAACATAAATTAGATTGGCGAATAGGTGCCA 704 Query 135523 CATTACGAATAAACGCCCCGTGATTGTTCATGTTGTCTGTGAACGTTGGGTAG----ATT 135578 | ||| ||| |||| | ||| | || || ||| |||||| ||| || Sbjct 703 CTTTAGCAATGAACGGGCTGTGCGTATTACAGTGGTC----AACGTTTTGTAAGTAAATA 648 Query 135579 CGACCAGTGTTAAAACGTTCAATTGCCACCGCTAAAAACAGGTCTTCGGCTTTAACACGA 135638 ||||| || | |||||| || | | | | ||||| || ||||||| || Sbjct 647 CGACCGGTACTTGCACGTTCTTGCGCAAACATTGAGAACAGTTCAATAGCTTTAATGCGT 588 Query 135639 GTTTTACGAAC--ACTCGGATCTTTTTCCAGTTTTTCGTAAAGCTGGCGGAAACCT--TC 135694 ||||||||| | ||| |||| ||| |||| | |||||| ||| || || || Sbjct 587 TTTTTACGAATTGATTCG--TCTTGTTCGTATTTTACATAAAGC--GCGTCAAACTCGTC 532 Query 135695 CTCATCTCGGAAGTATAGATCCCACAACAAGCCACCCGCAACATCTGGACTAAACAGAGT 135754 | ||| || || ||| | | ||| | || || || ||||||| || Sbjct 531 TTGGTCTTCAAAAAATGCATCGTAAAG---GCCTGGCACATCAGAGGGGCTAAACAAGGT 475 Query 135755 AATGTAATCCCGTTTAAGGAATCGCTCTACCATCAGGTTATTAATCTGTACGCCGTAATC 135814 |||||| || ||||| || ||| ||| || ||||||| ||||||||||||||| Sbjct 474 AATGTAGTCGTCTTTAATTAAACGCGAGTACATTAGTTTATTAAACTGTACGCCGTAATC 415 Query 135815 AAGATGACGAATGCGGTTATCTTCCACCCCCTTATTGTTCTTTAACACAATCAGACTTTC 135874 | |||||| | |||||| || || ||||| || || || | || | ||| |||| Sbjct 414 TAAATGACGCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAGTACTAACAGGTTTTC 355 Query 135875 AAACTCTAAATGCCACATTGGGTAATAGAGAGTCGCCGCCCCGCCACGAATACCGCCTTG 135934 | ||||||||||| | ||||| | | || || || |||||||| | ||||||||| Sbjct 354 TACTTCTAAATGCCAAAGCGGGTAGAACAAGGTTGCTGCGCCGCCACGTACACCGCCTTG 295 Query 135935 TGAGCATGACTTAACGGCAGTCTGAAAATGTTTCCAGAATGGGATAACGCCAGTATG--A 135992 || || ||||| || || ||||| || || | || || ||| || ||||| | Sbjct 294 CGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAATACAACCCGTATGGTA 235 Query 135993 CGAACTTCACCATGCCCGATCTTAGATCCTTCCGCGCGAATCATACCAGCGTTGATACCG 136052 || |||| |||| | || | || || ||||| ||| ||||| || || Sbjct 234 CG--CTTCGCCATTGCGAATGTGGCTACCCAGTGCACGAATGCGACCTGCGTTAATGCCA 177 Query 136053 ATGCCAGCACGCTTGCTA-ATATACTTGATGATTGCATTTGCTGTTTCGTTGATGCCCTG 136111 ||||| ||||| |||| | | || || | |||||| | || |||| || | Sbjct 176 ATGCCGGCACG-TTGCGATACGTATTTAACAATTGCAGACGAGGTGGCGTTAATTGAAT- 119 Query 136112 CAATG-AGTCATCACTTTCAATCACCACGCACGAACTAAATTGTCGTGTTGGAGTACGCA 136170 ||| | ||| ||| || || | || ||||| ||||| || |||||||| ||||| | Sbjct 118 CAAGGCTGTCGCCACACTCTATTAATACACACGAGCTAAACTGGCGTGTTGGCGTACGAA 59 Query 136171 CACCCGCCATAATCGGAGTAGGCAGAGAGATTT 136203 |||| |||||||| || ||||| || || |||| Sbjct 58 CACCTGCCATAATTGGCGTAGGTAGTGAAATTT 26 >seq509673 Length=441 Score = 132 bits (146), Expect = 5e-26 Identities = 154/204 (75%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 135792 TTATTAATCTGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCCC---TTA 135848 ||||| | ||||||||||||||| | |||||| | ||||| |||||||| || ||| Sbjct 219 TTATTTAACTGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTA 278 Query 135849 TTGTTCTTTAACAC-AATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGT 135907 || ||| || || ||| |||| ||| ||||||||||| | ||||||| | | || Sbjct 279 TTTTTCAGTACCAATAAT--GACT--CAACTTCTAAATGCCATAATGGGTAAAACAACGT 334 Query 135908 CGCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTT 135967 ||| || |||||||| | |||||||||||||| | ||||| ||||| || || |||| Sbjct 335 CGCTGCACCGCCACGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTT 394 Query 135968 CCAGAATGGGATAACGCCAGTATG 135991 ||||||||||| || ||||| Sbjct 395 ATAGAATGGGATACAACCCGTATG 418 >seq351952 Length=416 Score = 98.7 bits (108), Expect = 1e-15 Identities = 127/173 (73%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 53632 GTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTA-TTGAAGCGCAC 53690 ||||||||||| | ||| || || ||| || |||| ||| | || | || || || || Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTA-ACGAGTTAAATCGTAC 92 Query 53691 CGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGCGTC 53750 |||||||| || || |||||||| | || || ||||| || |||| ||| | || || Sbjct 93 TGCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATC 152 Query 53751 CAGCAACATTTCTCGTAACAATACGTTAATATTCAAATGCTGACCACCTTCAA 53803 || |||||||| || || ||| |||| || || || ||||||||||||| Sbjct 153 CAATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCAA 205 >seq506238 Length=275 Score = 86.0 bits (94), Expect = 7e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 53612 TGAAAAATTAGAGAGATTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAG 53671 ||||| |||| | | ||| ||||| ||||| | | ||||| |||| || ||||| | Sbjct 32 TGAAATATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTG 91 Query 53672 TCAGACTATTGAAGCGCACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCT 53731 | | || || ||||| |||||||| || || ||||| || | || || || || | Sbjct 92 TTAATGAGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTT 151 Query 53732 CAGGATGTTCAACAGCGTCCAGCAACATTTCTCGTAACAATACGTTAATATTCAAATGCT 53791 |||| |||| |||||| || ||| |||| || || || || | || ||||| | Sbjct 152 CAGGGTGTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTT 211 Query 53792 GACCACCTTC 53801 |||||||||| Sbjct 212 GACCACCTTC 221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521282769321760