Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_005066.1
Length=164018
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 165 8e-36
seq509673 132 5e-26
seq351952 98.7 1e-15
seq506238 86.0 7e-12
>seq449735
Length=3187
Score = 165 bits (182), Expect = 8e-36
Identities = 496/753 (66%), Gaps = 27/753 (4%)
Strand=Plus/Minus
Query 135463 CCATCGGTTTAGTAGGCAGTGCAATTTCACAACACAGGTTAGATTGTTTAATCGGTGCTA 135522
||| ||| ||||| || | ||||||||| |||| | |||||||| ||| ||||| |
Sbjct 763 CCAACGGCTTAGTTGGTAATGCAATTTCTAAACATAAATTAGATTGGCGAATAGGTGCCA 704
Query 135523 CATTACGAATAAACGCCCCGTGATTGTTCATGTTGTCTGTGAACGTTGGGTAG----ATT 135578
| ||| ||| |||| | ||| | || || ||| |||||| ||| ||
Sbjct 703 CTTTAGCAATGAACGGGCTGTGCGTATTACAGTGGTC----AACGTTTTGTAAGTAAATA 648
Query 135579 CGACCAGTGTTAAAACGTTCAATTGCCACCGCTAAAAACAGGTCTTCGGCTTTAACACGA 135638
||||| || | |||||| || | | | | ||||| || ||||||| ||
Sbjct 647 CGACCGGTACTTGCACGTTCTTGCGCAAACATTGAGAACAGTTCAATAGCTTTAATGCGT 588
Query 135639 GTTTTACGAAC--ACTCGGATCTTTTTCCAGTTTTTCGTAAAGCTGGCGGAAACCT--TC 135694
||||||||| | ||| |||| ||| |||| | |||||| ||| || || ||
Sbjct 587 TTTTTACGAATTGATTCG--TCTTGTTCGTATTTTACATAAAGC--GCGTCAAACTCGTC 532
Query 135695 CTCATCTCGGAAGTATAGATCCCACAACAAGCCACCCGCAACATCTGGACTAAACAGAGT 135754
| ||| || || ||| | | ||| | || || || ||||||| ||
Sbjct 531 TTGGTCTTCAAAAAATGCATCGTAAAG---GCCTGGCACATCAGAGGGGCTAAACAAGGT 475
Query 135755 AATGTAATCCCGTTTAAGGAATCGCTCTACCATCAGGTTATTAATCTGTACGCCGTAATC 135814
|||||| || ||||| || ||| ||| || ||||||| |||||||||||||||
Sbjct 474 AATGTAGTCGTCTTTAATTAAACGCGAGTACATTAGTTTATTAAACTGTACGCCGTAATC 415
Query 135815 AAGATGACGAATGCGGTTATCTTCCACCCCCTTATTGTTCTTTAACACAATCAGACTTTC 135874
| |||||| | |||||| || || ||||| || || || | || | ||| ||||
Sbjct 414 TAAATGACGCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAGTACTAACAGGTTTTC 355
Query 135875 AAACTCTAAATGCCACATTGGGTAATAGAGAGTCGCCGCCCCGCCACGAATACCGCCTTG 135934
| ||||||||||| | ||||| | | || || || |||||||| | |||||||||
Sbjct 354 TACTTCTAAATGCCAAAGCGGGTAGAACAAGGTTGCTGCGCCGCCACGTACACCGCCTTG 295
Query 135935 TGAGCATGACTTAACGGCAGTCTGAAAATGTTTCCAGAATGGGATAACGCCAGTATG--A 135992
|| || ||||| || || ||||| || || | || || ||| || ||||| |
Sbjct 294 CGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAATACAACCCGTATGGTA 235
Query 135993 CGAACTTCACCATGCCCGATCTTAGATCCTTCCGCGCGAATCATACCAGCGTTGATACCG 136052
|| |||| |||| | || | || || ||||| ||| ||||| || ||
Sbjct 234 CG--CTTCGCCATTGCGAATGTGGCTACCCAGTGCACGAATGCGACCTGCGTTAATGCCA 177
Query 136053 ATGCCAGCACGCTTGCTA-ATATACTTGATGATTGCATTTGCTGTTTCGTTGATGCCCTG 136111
||||| ||||| |||| | | || || | |||||| | || |||| || |
Sbjct 176 ATGCCGGCACG-TTGCGATACGTATTTAACAATTGCAGACGAGGTGGCGTTAATTGAAT- 119
Query 136112 CAATG-AGTCATCACTTTCAATCACCACGCACGAACTAAATTGTCGTGTTGGAGTACGCA 136170
||| | ||| ||| || || | || ||||| ||||| || |||||||| ||||| |
Sbjct 118 CAAGGCTGTCGCCACACTCTATTAATACACACGAGCTAAACTGGCGTGTTGGCGTACGAA 59
Query 136171 CACCCGCCATAATCGGAGTAGGCAGAGAGATTT 136203
|||| |||||||| || ||||| || || ||||
Sbjct 58 CACCTGCCATAATTGGCGTAGGTAGTGAAATTT 26
>seq509673
Length=441
Score = 132 bits (146), Expect = 5e-26
Identities = 154/204 (75%), Gaps = 8/204 (4%)
Strand=Plus/Plus
Query 135792 TTATTAATCTGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCCC---TTA 135848
||||| | ||||||||||||||| | |||||| | ||||| |||||||| || |||
Sbjct 219 TTATTTAACTGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTA 278
Query 135849 TTGTTCTTTAACAC-AATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGT 135907
|| ||| || || ||| |||| ||| ||||||||||| | ||||||| | | ||
Sbjct 279 TTTTTCAGTACCAATAAT--GACT--CAACTTCTAAATGCCATAATGGGTAAAACAACGT 334
Query 135908 CGCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTT 135967
||| || |||||||| | |||||||||||||| | ||||| ||||| || || ||||
Sbjct 335 CGCTGCACCGCCACGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTT 394
Query 135968 CCAGAATGGGATAACGCCAGTATG 135991
||||||||||| || |||||
Sbjct 395 ATAGAATGGGATACAACCCGTATG 418
>seq351952
Length=416
Score = 98.7 bits (108), Expect = 1e-15
Identities = 127/173 (73%), Gaps = 2/173 (1%)
Strand=Plus/Plus
Query 53632 GTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTA-TTGAAGCGCAC 53690
||||||||||| | ||| || || ||| || |||| ||| | || | || || || ||
Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTA-ACGAGTTAAATCGTAC 92
Query 53691 CGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGCGTC 53750
|||||||| || || |||||||| | || || ||||| || |||| ||| | || ||
Sbjct 93 TGCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATC 152
Query 53751 CAGCAACATTTCTCGTAACAATACGTTAATATTCAAATGCTGACCACCTTCAA 53803
|| |||||||| || || ||| |||| || || || |||||||||||||
Sbjct 153 CAATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCAA 205
>seq506238
Length=275
Score = 86.0 bits (94), Expect = 7e-12
Identities = 133/190 (70%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 53612 TGAAAAATTAGAGAGATTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAG 53671
||||| |||| | | ||| ||||| ||||| | | ||||| |||| || ||||| |
Sbjct 32 TGAAATATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTG 91
Query 53672 TCAGACTATTGAAGCGCACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCT 53731
| | || || ||||| |||||||| || || ||||| || | || || || || |
Sbjct 92 TTAATGAGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTT 151
Query 53732 CAGGATGTTCAACAGCGTCCAGCAACATTTCTCGTAACAATACGTTAATATTCAAATGCT 53791
|||| |||| |||||| || ||| |||| || || || || | || ||||| |
Sbjct 152 CAGGGTGTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTT 211
Query 53792 GACCACCTTC 53801
||||||||||
Sbjct 212 GACCACCTTC 221
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521282769321760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |