Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_005083.2
Length=244834
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 197 2e-45
seq516580 132 7e-26
seq250551 102 1e-16
seq511551 100 4e-16
seq509673 100 4e-16
seq495949 93.3 7e-14
seq128994 84.2 3e-11
>seq449735
Length=3187
Score = 197 bits (218), Expect = 2e-45
Identities = 433/638 (68%), Gaps = 13/638 (2%)
Strand=Plus/Plus
Query 147144 AAACTTTCGCTACCTACACCGATTATGGCAGGCGTTCGTACCCCGACACGTCAATTTAGC 147203
||| |||| |||||||| || ||||||||||| |||||||| || ||||| || ||||||
Sbjct 25 AAAATTTCACTACCTACGCCAATTATGGCAGGTGTTCGTACGCCAACACGCCAGTTTAGC 84
Query 147204 TCGTGTGTGAAAATCGAATCTGGCGACTCGCTGCGTTCGATCAACAAGGTATCTGAAGCT 147263
|||||||| ||| || | ||||||| || ||| || ||| || ||
Sbjct 85 TCGTGTGTATTAATAGAGTGTGGCGACAGCCTTGATTCAATTAACGCCACCTCGTCTGCA 144
Query 147264 ATCGTTGATTACATTAGTAAACGTGCGGGTATTGGCGTAAACGGTGGTGCAATTCGAGCA 147323
|| ||| | ||| | ||||||| || |||||| | |||| ||| ||||| |||
Sbjct 145 ATTGTTAAATACGTATCGCAACGTGCCGGCATTGGCATTAACGCAGGTCGCATTCGTGCA 204
Query 147324 GAGGGTTCGGTTGTACGTGCGGGTGAAATTCGT--CACACTGGCGTAATTCCTTTCTGGA 147381
|||| | || || ||| ||| || || || |||||||| | |
Sbjct 205 CTGGGTAGCCACATTCGCAATGGCGAAG--CGTACCATACGGGTTGTATTCCTTTTTATA 262
Query 147382 AACACTTTCAGACTGCGGTTAAATCGTGTTCTCAAGGTGGTGTACGTGGCGGTGCTGCGA 147441
| |||||||| || ||||||||| ||||| ||||| |||||||||||||| || || |
Sbjct 263 AGCACTTTCAAACAGCGGTTAAAAGCTGTTCGCAAGGCGGTGTACGTGGCGGCGCAGCAA 322
Query 147442 CTCTGACTTACCCGATCTGGCACTTAGAAGTAGAAAAGCTTCTTGTTCTGAAGAACAACA 147501
| || |||||| | ||||| |||||||||||||| || | || || || || |||
Sbjct 323 CCTTGTTCTACCCGCTTTGGCATTTAGAAGTAGAAAACCTGTTAGTACTTAAAAATAACC 382
Query 147502 AAGGTGTTGAAGAGAACCGTATTCGTCATCTTGACTACAGCGTATCAATTAACCGATTGA 147561
|| ||||| || ||||| | |||||| | || ||| ||||| |||| | | |
Sbjct 383 GCGGGGTTGATGACAACCGCGTGCGTCATTTAGATTACGGCGTACAGTTTAATAAACTAA 442
Query 147562 TGATGCAACGCCTGGTTAATAACGAGTACATCACGCTATTCAGCCCCGATGAGCGTCACG 147621
|| || | |||| |||| ||||| || | || |||||| ||| || |
Sbjct 443 TGTACTCGCGTTTAATTAAAGACGACTACATTACCTTGTTTAGCCCCTCTGA-TGTGCCA 501
Query 147622 GTGCGCTTTACGGTGAGTATCACACAAACCCAGAAGAGTTTGA-GCGTCTTTACCTAGAG 147680
| || ||||||| || | | | ||| ||| |||||||| ||| ||||| || |
Sbjct 502 G-GC-CTTTACGATGCATTTTTTGAAGACCAAGACGAGTTTGACGCG-CTTTATGTAAAA 558
Query 147681 CTTGAAGCTGATCCGAA--AGTGCGCAAGAAACGCATCAAGGCAACTGAACTATTCAGTA 147738
||| || |||| | | || || |||||||| || || | |||||| ||| |
Sbjct 559 TACGAACAAGA--CGAATCAATTCGTAAAAAACGCATTAAAGCTATTGAACTGTTCTCAA 616
Query 147739 TCTTTGGTCAAGAGCGTTCAAGTACGGGTCGTATCTAC 147776
| |||| ||||| ||| ||||||| |||||||| |||
Sbjct 617 TGTTTGCGCAAGAACGTGCAAGTACCGGTCGTATTTAC 654
>seq516580
Length=413
Score = 132 bits (146), Expect = 7e-26
Identities = 170/234 (73%), Gaps = 3/234 (1%)
Strand=Plus/Minus
Query 8326 TGATCCTTGTTACGGAATCAAGAAGCTTGCTCTTGAGTGTGCAAGTAAACGCATGTACCC 8385
||||||| |||| ||||| || | || |||| ||||| | || || ||||| ||
Sbjct 311 TGATCCTAACTACGACATCAAACAGTTAGCAGTTGAATGTGCTACCAAGCGTATGTATCC 252
Query 8386 AGACATTTTGAACTATGAAAAGCTAGTTGAAACAACTGGCGGATTCAAGTCGCCTATGGG 8445
||| ||||||||||| || ||| |||||||||| ||||| || ||||||| || |||||
Sbjct 251 AGATATTTTGAACTACGACAAGTTAGTTGAAACTACTGGTGGGTTCAAGTACCCAATGGG 192
Query 8446 ATGTCGTTCATTCTTGGGTGAATGGAAAAA---TGAAGATGGCGAAACTGTATTCGACGG 8502
|||||||||||| | |||||| | | | | || ||| | |||| || ||
Sbjct 191 CTGTCGTTCATTCCTACACGAATGGTCAGACCCAGTAACAGGTGAACCAGTATATGATGG 132
Query 8503 TCGTAATAACTTAGGTGTTGTTTCTATAAACATCCCGCGTATTGCAATCGAAGC 8556
||||||||||| |||||||| || || ||| | || ||| | || || ||||
Sbjct 131 ACGTAATAACTTGGGTGTTGTATCAATCAACTTACCTCGTTTAGCGCTCAAAGC 78
>seq250551
Length=853
Score = 102 bits (112), Expect = 1e-16
Identities = 167/238 (70%), Gaps = 2/238 (1%)
Strand=Plus/Plus
Query 8999 GGTATCAACGACAAAGACTATTACACGAACTCGTTTCACTTAGATGTGTTCAAGAAAGTG 9058
||| | | |||||||| ||||||||| || || ||||||||||| ||||||||
Sbjct 386 GGTGTGACCGACAAAGGCTATTACACCAATAGCTTCCACTTAGATGTTGAAAAGAAAGTA 445
Query 9059 AATCCGTTCGAGAAGATTGATTTCGAAGCAGCATACCCAATTCAT-GCGAATGGTGGTTT 9117
||||| || || ||||||||||| ||| | | || || | ||| || ||||| || ||
Sbjct 446 AATCCTTTTGATAAGATTGATTTTGAACAACCTTATCC-AGCCATCGCCAATGGCGGGTT 504
Query 9118 CATCTGCTATGCTGAATTCCCGAACATGCGAGACAACATCAAAGGTCTAGAGCGCGTATG 9177
|| || || | |||| || ||||||| |||| || ||| || || ||| ||
Sbjct 505 TATTTGTTACGGCGAATATCCCAACATGCAGCACAATATTGAAGCGCTCGAAAACGTTTG 564
Query 9178 GGATTACGCATATAAGAAAGTTGCGTACTTCGGCACAAACACGCCGATTGACCAGTGT 9235
||||||| |||| ||| | || | |||||| || || || ||||| |||||
Sbjct 565 GGATTACAGTTATAGCCGAGTGCCATATTACGGCACCAATACTCCCATTGATGAGTGT 622
>seq511551
Length=634
Score = 100 bits (110), Expect = 4e-16
Identities = 231/348 (66%), Gaps = 0/348 (0%)
Strand=Plus/Plus
Query 8087 GAGAAAGAAACGTATGATGCGTTTCAGACTTTTGAATACCAAGTCAATACAATGCAGACT 8146
|||||||| || |||||||| || || | | |||| ||| || | || || | || ||
Sbjct 38 GAGAAAGAGACTTATGATGCTTTCCAAAGTCTTGAGTACGAAATTAACACCTTACACACA 97
Query 8147 TCAAATGGTCAGACACCATTCACGACAATCAACTTCGGTTTAGGTACTTCGTGGGAAGAG 8206
||||||| || | || || || | || ||||||||||||| |||||
Sbjct 98 GCAAATGGACAAAGCCCCTTTTGTACGGTAGGTTTTGGTTTAGGTACTTGTTGGGAGTCT 157
Query 8207 AAACTGATTCAGAAAAGCATTCTGCAAAATCGTATTGCTGGTCTAGGCAAGACTAAGAAA 8266
|| || ||||||||| ||| || | |||||| || |||| | ||||
Sbjct 158 AAGCTAATTCAGAAATCCATCCTTGAGGTGCGTATTAAAGGCTTAGGTGCATCAAAGAGG 217
Query 8267 ACTGCTATCTTCCCGAAACTTGTTTTCACGTTGAAAGACGGTGTTAACTTGAAAGAAGGT 8326
|| || | ||||| || ||| | | || | ||||||||||| ||||| ||| | |
Sbjct 218 ACAGCGGTATTCCCTAAGCTTATCCTAACTATTAAAGACGGTGTCAACTTTAAACAGGAA 277
Query 8327 GATCCTTGTTACGGAATCAAGAAGCTTGCTCTTGAGTGTGCAAGTAAACGCATGTACCCA 8386
|| || || || || || | ||||| |||||||| ||||| || ||||||||
Sbjct 278 GACCCAAACTATAATATTAAACAGTTAGCTCTAGAGTGTGCCAGTAAGCGTATGTACCCT 337
Query 8387 GACATTTTGAACTATGAAAAGCTAGTTGAAACAACTGGCGGATTCAAG 8434
|| ||| | ||||| || ||| | || || ||||| || || |||
Sbjct 338 GATATTATCAACTACGATAAGATTGTAGAGGTTACTGGTGGTTTTAAG 385
>seq509673
Length=441
Score = 100 bits (110), Expect = 4e-16
Identities = 134/185 (72%), Gaps = 1/185 (1%)
Strand=Plus/Minus
Query 147369 ATTCCTTTCTGGAAACACTTTCAGACTGCGGTTAAATCGTGTTCTCAAGGTGGTGTACGT 147428
|| || |||| |||| || || ||||| ||||||| || || ||||| || || |||
Sbjct 406 ATCCCATTCTATAAACTGTTCCAAACTGCTGTTAAATGCTGCTCACAAGGCGGCGTCCGT 347
Query 147429 GGCGGTGCTGCGACTCTGACTTACCCGATCTGGCACTTAGAAGTAGAAAAGCTTCTTGTT 147488
|||||||| ||||| || |||||| | ||||| |||||||| || | | ||
Sbjct 346 GGCGGTGCAGCGACGTTGTTTTACCCATTATGGCATTTAGAAGTTGAGTCATTATTGGTA 287
Query 147489 CTGAAGAACAACAAAGGTGTTGAAGAGAACCGTATTCGTCATCTTGACTACAGCGTATCA 147548
||||| || ||| || || ||||| |||||| | |||||| | || ||| ||||| ||
Sbjct 286 CTGAAAAATAACCGCGGCGTGGAAGACAACCGTGTCCGTCATATGGATTACGGCGTA-CA 228
Query 147549 ATTAA 147553
||||
Sbjct 227 GTTAA 223
>seq495949
Length=456
Score = 93.3 bits (102), Expect = 7e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 7629 TTAAAGAAAATGCCAATAAAGACTCGAAAGTGATCCCTACAATGCGTGACTTGGTAGCTG 7688
|||| ||||| ||||| ||||| || || | || ||||| || ||||| ||||||
Sbjct 243 TTAATGAAAACGCCAACAAAGATTCAAAGATCATACCTACTCAACGCGACTTACTAGCTG 302
Query 7689 GTACAGTGTCGAAACAATATGCACTGGAAGAA-TATCTACCGAAGCACATTGCAGACGCT 7747
||| || || || || ||||| || ||| || || |||| ||||||||||| |||
Sbjct 303 GTATTGTTTCAAAGCATTATGC-CTTGAACAAGTACTTACCTAAGCACATTGCTCGCGCA 361
Query 7748 CATATCGACGGCGATATTCATTTTCACGACCTTGATTATAGCCCACTATTCCCGCAATTC 7807
||| | || ||||| || | |||||| || || ||| |||| | ||||| |||
Sbjct 362 CATGAAAAAGGTGATATACACTATCACGATCTAGACTATGCCCCATTCTTCCCAAGCTTC 421
Query 7808 AACTGTATGCTTATCGAC 7825
|| |||||| | || |||
Sbjct 422 AATTGTATGTTGATTGAC 439
>seq128994
Length=861
Score = 84.2 bits (92), Expect = 3e-11
Identities = 151/216 (70%), Gaps = 6/216 (3%)
Strand=Plus/Minus
Query 149364 TATCTGTGTATGCACGCAGTAAATGCTCTTGAAGCTATTCGATTCTACGTTTCATTCGCG 149423
||| |||| ||| |||| ||||| | ||||| ||||| ||||| || || ||
Sbjct 472 TATTTGTGCATGATGTCAGTCAATGCCTTAGAAGCGATTCGCTTCTATGTCAGTTTTGCC 413
Query 149424 TGTACGTTCAACTTTGCCGAGCAAGGCATTATGGAAGGTAACGCTAAAGTAATGAAGCTG 149483
||| |||| |||||| || | | ||||||||||||| |||||| | || |
Sbjct 412 TGTTCGTTTGCCTTTGCTGAACGTCGTGTTATGGAAGGTAATGCTAAAATTATTCGCTTA 353
Query 149484 ATTGCTCGTGATGAACAGCTTCACTTGAAAGGTACACAA-GCGTTAATCAGCATCTG--G 149540
||||| ||||||||| | ||| | || |||||||| | || | ||| |||| |
Sbjct 352 ATTGCCCGTGATGAAGCCTTACACCTCAATAGTACACAACACATT--TTAGC-TCTGATG 296
Query 149541 CAGAACTACAAAGACGACCCAGAAATGGCAGAAATT 149576
||| ||||||||||||||||||| |||||||
Sbjct 295 CAGGGTGGTAAAGACGACCCAGAAATGGGAGAAATT 260
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 778195210536480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |