Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_005083.2 Length=244834 Score E Sequences producing significant alignments: (Bits) Value seq449735 197 2e-45 seq516580 132 7e-26 seq250551 102 1e-16 seq511551 100 4e-16 seq509673 100 4e-16 seq495949 93.3 7e-14 seq128994 84.2 3e-11 >seq449735 Length=3187 Score = 197 bits (218), Expect = 2e-45 Identities = 433/638 (68%), Gaps = 13/638 (2%) Strand=Plus/Plus Query 147144 AAACTTTCGCTACCTACACCGATTATGGCAGGCGTTCGTACCCCGACACGTCAATTTAGC 147203 ||| |||| |||||||| || ||||||||||| |||||||| || ||||| || |||||| Sbjct 25 AAAATTTCACTACCTACGCCAATTATGGCAGGTGTTCGTACGCCAACACGCCAGTTTAGC 84 Query 147204 TCGTGTGTGAAAATCGAATCTGGCGACTCGCTGCGTTCGATCAACAAGGTATCTGAAGCT 147263 |||||||| ||| || | ||||||| || ||| || ||| || || Sbjct 85 TCGTGTGTATTAATAGAGTGTGGCGACAGCCTTGATTCAATTAACGCCACCTCGTCTGCA 144 Query 147264 ATCGTTGATTACATTAGTAAACGTGCGGGTATTGGCGTAAACGGTGGTGCAATTCGAGCA 147323 || ||| | ||| | ||||||| || |||||| | |||| ||| ||||| ||| Sbjct 145 ATTGTTAAATACGTATCGCAACGTGCCGGCATTGGCATTAACGCAGGTCGCATTCGTGCA 204 Query 147324 GAGGGTTCGGTTGTACGTGCGGGTGAAATTCGT--CACACTGGCGTAATTCCTTTCTGGA 147381 |||| | || || ||| ||| || || || |||||||| | | Sbjct 205 CTGGGTAGCCACATTCGCAATGGCGAAG--CGTACCATACGGGTTGTATTCCTTTTTATA 262 Query 147382 AACACTTTCAGACTGCGGTTAAATCGTGTTCTCAAGGTGGTGTACGTGGCGGTGCTGCGA 147441 | |||||||| || ||||||||| ||||| ||||| |||||||||||||| || || | Sbjct 263 AGCACTTTCAAACAGCGGTTAAAAGCTGTTCGCAAGGCGGTGTACGTGGCGGCGCAGCAA 322 Query 147442 CTCTGACTTACCCGATCTGGCACTTAGAAGTAGAAAAGCTTCTTGTTCTGAAGAACAACA 147501 | || |||||| | ||||| |||||||||||||| || | || || || || ||| Sbjct 323 CCTTGTTCTACCCGCTTTGGCATTTAGAAGTAGAAAACCTGTTAGTACTTAAAAATAACC 382 Query 147502 AAGGTGTTGAAGAGAACCGTATTCGTCATCTTGACTACAGCGTATCAATTAACCGATTGA 147561 || ||||| || ||||| | |||||| | || ||| ||||| |||| | | | Sbjct 383 GCGGGGTTGATGACAACCGCGTGCGTCATTTAGATTACGGCGTACAGTTTAATAAACTAA 442 Query 147562 TGATGCAACGCCTGGTTAATAACGAGTACATCACGCTATTCAGCCCCGATGAGCGTCACG 147621 || || | |||| |||| ||||| || | || |||||| ||| || | Sbjct 443 TGTACTCGCGTTTAATTAAAGACGACTACATTACCTTGTTTAGCCCCTCTGA-TGTGCCA 501 Query 147622 GTGCGCTTTACGGTGAGTATCACACAAACCCAGAAGAGTTTGA-GCGTCTTTACCTAGAG 147680 | || ||||||| || | | | ||| ||| |||||||| ||| ||||| || | Sbjct 502 G-GC-CTTTACGATGCATTTTTTGAAGACCAAGACGAGTTTGACGCG-CTTTATGTAAAA 558 Query 147681 CTTGAAGCTGATCCGAA--AGTGCGCAAGAAACGCATCAAGGCAACTGAACTATTCAGTA 147738 ||| || |||| | | || || |||||||| || || | |||||| ||| | Sbjct 559 TACGAACAAGA--CGAATCAATTCGTAAAAAACGCATTAAAGCTATTGAACTGTTCTCAA 616 Query 147739 TCTTTGGTCAAGAGCGTTCAAGTACGGGTCGTATCTAC 147776 | |||| ||||| ||| ||||||| |||||||| ||| Sbjct 617 TGTTTGCGCAAGAACGTGCAAGTACCGGTCGTATTTAC 654 >seq516580 Length=413 Score = 132 bits (146), Expect = 7e-26 Identities = 170/234 (73%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 8326 TGATCCTTGTTACGGAATCAAGAAGCTTGCTCTTGAGTGTGCAAGTAAACGCATGTACCC 8385 ||||||| |||| ||||| || | || |||| ||||| | || || ||||| || Sbjct 311 TGATCCTAACTACGACATCAAACAGTTAGCAGTTGAATGTGCTACCAAGCGTATGTATCC 252 Query 8386 AGACATTTTGAACTATGAAAAGCTAGTTGAAACAACTGGCGGATTCAAGTCGCCTATGGG 8445 ||| ||||||||||| || ||| |||||||||| ||||| || ||||||| || ||||| Sbjct 251 AGATATTTTGAACTACGACAAGTTAGTTGAAACTACTGGTGGGTTCAAGTACCCAATGGG 192 Query 8446 ATGTCGTTCATTCTTGGGTGAATGGAAAAA---TGAAGATGGCGAAACTGTATTCGACGG 8502 |||||||||||| | |||||| | | | | || ||| | |||| || || Sbjct 191 CTGTCGTTCATTCCTACACGAATGGTCAGACCCAGTAACAGGTGAACCAGTATATGATGG 132 Query 8503 TCGTAATAACTTAGGTGTTGTTTCTATAAACATCCCGCGTATTGCAATCGAAGC 8556 ||||||||||| |||||||| || || ||| | || ||| | || || |||| Sbjct 131 ACGTAATAACTTGGGTGTTGTATCAATCAACTTACCTCGTTTAGCGCTCAAAGC 78 >seq250551 Length=853 Score = 102 bits (112), Expect = 1e-16 Identities = 167/238 (70%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 8999 GGTATCAACGACAAAGACTATTACACGAACTCGTTTCACTTAGATGTGTTCAAGAAAGTG 9058 ||| | | |||||||| ||||||||| || || ||||||||||| |||||||| Sbjct 386 GGTGTGACCGACAAAGGCTATTACACCAATAGCTTCCACTTAGATGTTGAAAAGAAAGTA 445 Query 9059 AATCCGTTCGAGAAGATTGATTTCGAAGCAGCATACCCAATTCAT-GCGAATGGTGGTTT 9117 ||||| || || ||||||||||| ||| | | || || | ||| || ||||| || || Sbjct 446 AATCCTTTTGATAAGATTGATTTTGAACAACCTTATCC-AGCCATCGCCAATGGCGGGTT 504 Query 9118 CATCTGCTATGCTGAATTCCCGAACATGCGAGACAACATCAAAGGTCTAGAGCGCGTATG 9177 || || || | |||| || ||||||| |||| || ||| || || ||| || Sbjct 505 TATTTGTTACGGCGAATATCCCAACATGCAGCACAATATTGAAGCGCTCGAAAACGTTTG 564 Query 9178 GGATTACGCATATAAGAAAGTTGCGTACTTCGGCACAAACACGCCGATTGACCAGTGT 9235 ||||||| |||| ||| | || | |||||| || || || ||||| ||||| Sbjct 565 GGATTACAGTTATAGCCGAGTGCCATATTACGGCACCAATACTCCCATTGATGAGTGT 622 >seq511551 Length=634 Score = 100 bits (110), Expect = 4e-16 Identities = 231/348 (66%), Gaps = 0/348 (0%) Strand=Plus/Plus Query 8087 GAGAAAGAAACGTATGATGCGTTTCAGACTTTTGAATACCAAGTCAATACAATGCAGACT 8146 |||||||| || |||||||| || || | | |||| ||| || | || || | || || Sbjct 38 GAGAAAGAGACTTATGATGCTTTCCAAAGTCTTGAGTACGAAATTAACACCTTACACACA 97 Query 8147 TCAAATGGTCAGACACCATTCACGACAATCAACTTCGGTTTAGGTACTTCGTGGGAAGAG 8206 ||||||| || | || || || | || ||||||||||||| ||||| Sbjct 98 GCAAATGGACAAAGCCCCTTTTGTACGGTAGGTTTTGGTTTAGGTACTTGTTGGGAGTCT 157 Query 8207 AAACTGATTCAGAAAAGCATTCTGCAAAATCGTATTGCTGGTCTAGGCAAGACTAAGAAA 8266 || || ||||||||| ||| || | |||||| || |||| | |||| Sbjct 158 AAGCTAATTCAGAAATCCATCCTTGAGGTGCGTATTAAAGGCTTAGGTGCATCAAAGAGG 217 Query 8267 ACTGCTATCTTCCCGAAACTTGTTTTCACGTTGAAAGACGGTGTTAACTTGAAAGAAGGT 8326 || || | ||||| || ||| | | || | ||||||||||| ||||| ||| | | Sbjct 218 ACAGCGGTATTCCCTAAGCTTATCCTAACTATTAAAGACGGTGTCAACTTTAAACAGGAA 277 Query 8327 GATCCTTGTTACGGAATCAAGAAGCTTGCTCTTGAGTGTGCAAGTAAACGCATGTACCCA 8386 || || || || || || | ||||| |||||||| ||||| || |||||||| Sbjct 278 GACCCAAACTATAATATTAAACAGTTAGCTCTAGAGTGTGCCAGTAAGCGTATGTACCCT 337 Query 8387 GACATTTTGAACTATGAAAAGCTAGTTGAAACAACTGGCGGATTCAAG 8434 || ||| | ||||| || ||| | || || ||||| || || ||| Sbjct 338 GATATTATCAACTACGATAAGATTGTAGAGGTTACTGGTGGTTTTAAG 385 >seq509673 Length=441 Score = 100 bits (110), Expect = 4e-16 Identities = 134/185 (72%), Gaps = 1/185 (1%) Strand=Plus/Minus Query 147369 ATTCCTTTCTGGAAACACTTTCAGACTGCGGTTAAATCGTGTTCTCAAGGTGGTGTACGT 147428 || || |||| |||| || || ||||| ||||||| || || ||||| || || ||| Sbjct 406 ATCCCATTCTATAAACTGTTCCAAACTGCTGTTAAATGCTGCTCACAAGGCGGCGTCCGT 347 Query 147429 GGCGGTGCTGCGACTCTGACTTACCCGATCTGGCACTTAGAAGTAGAAAAGCTTCTTGTT 147488 |||||||| ||||| || |||||| | ||||| |||||||| || | | || Sbjct 346 GGCGGTGCAGCGACGTTGTTTTACCCATTATGGCATTTAGAAGTTGAGTCATTATTGGTA 287 Query 147489 CTGAAGAACAACAAAGGTGTTGAAGAGAACCGTATTCGTCATCTTGACTACAGCGTATCA 147548 ||||| || ||| || || ||||| |||||| | |||||| | || ||| ||||| || Sbjct 286 CTGAAAAATAACCGCGGCGTGGAAGACAACCGTGTCCGTCATATGGATTACGGCGTA-CA 228 Query 147549 ATTAA 147553 |||| Sbjct 227 GTTAA 223 >seq495949 Length=456 Score = 93.3 bits (102), Expect = 7e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 7629 TTAAAGAAAATGCCAATAAAGACTCGAAAGTGATCCCTACAATGCGTGACTTGGTAGCTG 7688 |||| ||||| ||||| ||||| || || | || ||||| || ||||| |||||| Sbjct 243 TTAATGAAAACGCCAACAAAGATTCAAAGATCATACCTACTCAACGCGACTTACTAGCTG 302 Query 7689 GTACAGTGTCGAAACAATATGCACTGGAAGAA-TATCTACCGAAGCACATTGCAGACGCT 7747 ||| || || || || ||||| || ||| || || |||| ||||||||||| ||| Sbjct 303 GTATTGTTTCAAAGCATTATGC-CTTGAACAAGTACTTACCTAAGCACATTGCTCGCGCA 361 Query 7748 CATATCGACGGCGATATTCATTTTCACGACCTTGATTATAGCCCACTATTCCCGCAATTC 7807 ||| | || ||||| || | |||||| || || ||| |||| | ||||| ||| Sbjct 362 CATGAAAAAGGTGATATACACTATCACGATCTAGACTATGCCCCATTCTTCCCAAGCTTC 421 Query 7808 AACTGTATGCTTATCGAC 7825 || |||||| | || ||| Sbjct 422 AATTGTATGTTGATTGAC 439 >seq128994 Length=861 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 149364 TATCTGTGTATGCACGCAGTAAATGCTCTTGAAGCTATTCGATTCTACGTTTCATTCGCG 149423 ||| |||| ||| |||| ||||| | ||||| ||||| ||||| || || || Sbjct 472 TATTTGTGCATGATGTCAGTCAATGCCTTAGAAGCGATTCGCTTCTATGTCAGTTTTGCC 413 Query 149424 TGTACGTTCAACTTTGCCGAGCAAGGCATTATGGAAGGTAACGCTAAAGTAATGAAGCTG 149483 ||| |||| |||||| || | | ||||||||||||| |||||| | || | Sbjct 412 TGTTCGTTTGCCTTTGCTGAACGTCGTGTTATGGAAGGTAATGCTAAAATTATTCGCTTA 353 Query 149484 ATTGCTCGTGATGAACAGCTTCACTTGAAAGGTACACAA-GCGTTAATCAGCATCTG--G 149540 ||||| ||||||||| | ||| | || |||||||| | || | ||| |||| | Sbjct 352 ATTGCCCGTGATGAAGCCTTACACCTCAATAGTACACAACACATT--TTAGC-TCTGATG 296 Query 149541 CAGAACTACAAAGACGACCCAGAAATGGCAGAAATT 149576 ||| ||||||||||||||||||| ||||||| Sbjct 295 CAGGGTGGTAAAGACGACCCAGAAATGGGAGAAATT 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 778195210536480