Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_005135.1
Length=173591
Score E
Sequences producing significant alignments: (Bits) Value
seq456595 122 1e-22
seq253801 105 7e-18
seq351952 100 3e-16
seq506238 95.1 1e-14
seq466369 93.3 5e-14
seq512778 86.0 7e-12
>seq456595
Length=1187
Score = 122 bits (134), Expect = 1e-22
Identities = 164/224 (73%), Gaps = 6/224 (3%)
Strand=Plus/Plus
Query 7013 ACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCGAAA-TTGCAACTAAA 7071
||||| ||||||||| || || || ||||| || ||||| || || ||||| | |||
Sbjct 325 ACTGCGCTGTTTGCTTGCGAGCCTGAGTGAGGCTGTACGTTGGCATAAGTTGCACC-AAA 383
Query 7072 CAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCC 7131
| |||||| || || ||||| |||| | || | |||| | | | |||| || ||
Sbjct 384 TAATTCTTTTGCGCGTTCAATAGCCAATGTTTCAACAACATCAACGTATTCGCACCCACC 443
Query 7132 ATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCCTGTGC 7191
|||||| || ||||| ||||| || |||||||||||||| || || ||||| || ||
Sbjct 444 ATAATAACGCTTGCCTGGATAACCTTCAGCATACTTGTTAGTTAACTGTGAACCTTGCGC 503
Query 7192 TTTCATAACA--TCGTCTGACACATAGTTTTCGGACGCAATCAA 7233
|| ||| ||| | | ||| ||||||||| |||||||||||
Sbjct 504 TTCCATCACACGTGGACTG--GTATAGTTTTCAGACGCAATCAA 545
>seq253801
Length=811
Score = 105 bits (116), Expect = 7e-18
Identities = 177/256 (69%), Gaps = 0/256 (0%)
Strand=Plus/Minus
Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997
|| || || | ||||||||| | ||| |||| | || || | |||||| | ||
Sbjct 619 CCATGCGTTAAATGGCCGCCATGAGCTAAGCTCATACCTAGTACGGTATCACCGGCGTTT 560
Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057
| | |||| |||| ||| |||||||| ||||| | ||| ||||| ||||||||
Sbjct 559 AACAATGCTAAAAAAACGGCCGCATTTGCTTGCGAACCAGCATGTGGTTGTACGTTTGCA 500
Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCT 7117
| | ||| ||| ||||| |||||||| ||||| || | | ||| | | || |
Sbjct 499 TAGTCAGAACCAAATAGTTCGTTAGCACGGTCAATCGCTAATTGCTCAACAACGTCTACA 440
Query 7118 TTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAA 7177
| | || |||||||| || |||||||||||||| || || || || || || || ||
Sbjct 439 TGCTCACAACCGCCATAGTAACGTTTGCCCGGATAACCTTCTGCGTATTTATTAGTTAAC 380
Query 7178 ATAGAACCCTGTGCTT 7193
|||||||||||||
Sbjct 379 TGTGAACCCTGTGCTT 364
>seq351952
Length=416
Score = 100 bits (110), Expect = 3e-16
Identities = 133/183 (73%), Gaps = 4/183 (2%)
Strand=Plus/Plus
Query 65951 TGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAGCGTAC 66010
||| || || || |||||||| || | | ||| || | |||||| | ||||| |||||
Sbjct 33 TGTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTAC 92
Query 66011 GGCATAACCGGAAACACGGATGGTTAGTTGGGGATATTTTTCTGGATTAACGATTGCATC 66070
|| ||||| || ||||| || |||| ||| ||||| || |||||||| | ||||||||
Sbjct 93 TGCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATC 152
Query 66071 TTCCAGGGTATTTC--GGTCAAGAACATTTACGTTGAGATGCTGACCACCTTCAACAGTT 66128
| | ||||| ||| | ||||| ||||| | || ||||||||||||| | |
Sbjct 153 --CAATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCAATATCT 210
Query 66129 GGC 66131
|||
Sbjct 211 GGC 213
>seq506238
Length=275
Score = 95.1 bits (104), Expect = 1e-14
Identities = 128/177 (72%), Gaps = 6/177 (3%)
Strand=Plus/Plus
Query 65948 TTGTGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAGCG 66007
|| ||| || || || || | |||||| | ||||| || || ||||||| ||||| ||
Sbjct 48 TTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATGAGTTAAAACG 107
Query 66008 TACGGCATAACCGGAAACACGGATGGTTAGTTGGGGATATTTTTCTG---GATTAACGAT 66064
|| || ||||| || ||||| || |||| ||| ||||||||||| | | |||||
Sbjct 108 CACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGTGTTTAAC--- 164
Query 66065 TGCATCTTCCAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACCACCTTC 66121
|||||||||| || | || | ||||| ||||| | ||| |||||||||||
Sbjct 165 AGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCACCTTC 221
>seq466369
Length=706
Score = 93.3 bits (102), Expect = 5e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 6985 ATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGG 7044
|||||| || || | | ||| |||||| || |||||||||||||| ||||| ||
Sbjct 363 ATCACCTGGTTTAACTAATGCCATGTAAACAGCAGCATTTGCTTGTGAACCAGAATGTGG 422
Query 7045 TTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTC 7104
||| || || ||| ||| || ||||| || |||||||| || ||||| || |||
Sbjct 423 TTGTACATTCGCGTAATCAGCACCAAACAATTGCTTAGCACGTTCGATTGCTAGAGACTC 482
Query 7105 GATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATA 7164
||| | | | || |||||||| || |||||||| || || || || |||||
Sbjct 483 TGCAATATCAACATACTCACAACCGCCATAGTAGCGTTTGCCTGGGTAGCCTTCTGCATA 542
Query 7165 CTTGTTGGTAAAAATAGAACCCTGTGCTTTCATAAC 7200
||| || |||| ||| || || |||| ||| ||
Sbjct 543 CTTATTAGTAAGCTGAGAGCCTTGAGCTTCCATTAC 578
>seq512778
Length=498
Score = 86.0 bits (94), Expect = 7e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 7034 CCGGAATGAGGTTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATT 7093
||||| || || || ||||| ||| ||| | | ||||||| ||| ||||| || ||
Sbjct 484 CCGGAGTGCGGCTGCACGTTGGCGTAATCGGCGCCGAACAGTTGTTTGGCACGGTCGATG 425
Query 7094 GCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATAT 7153
||||| | ||| | || || | | | |||||||||| || || || |||||||| ||
Sbjct 424 GCCAGTTGCTCAACTTTGTCCACATGTTCGCAGCCGCCGTAGTAGCGCTTGCCCGGGTAG 365
Query 7154 CCCTCAGCATACTTGTTGGT 7173
|| || || |||||||||||
Sbjct 364 CCTTCGGCGTACTTGTTGGT 345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 551715144095920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |