Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq456595 122 1e-22 seq253801 105 7e-18 seq351952 100 3e-16 seq506238 95.1 1e-14 seq466369 93.3 5e-14 seq512778 86.0 7e-12 >seq456595 Length=1187 Score = 122 bits (134), Expect = 1e-22 Identities = 164/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 7013 ACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCGAAA-TTGCAACTAAA 7071 ||||| ||||||||| || || || ||||| || ||||| || || ||||| | ||| Sbjct 325 ACTGCGCTGTTTGCTTGCGAGCCTGAGTGAGGCTGTACGTTGGCATAAGTTGCACC-AAA 383 Query 7072 CAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCC 7131 | |||||| || || ||||| |||| | || | |||| | | | |||| || || Sbjct 384 TAATTCTTTTGCGCGTTCAATAGCCAATGTTTCAACAACATCAACGTATTCGCACCCACC 443 Query 7132 ATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCCTGTGC 7191 |||||| || ||||| ||||| || |||||||||||||| || || ||||| || || Sbjct 444 ATAATAACGCTTGCCTGGATAACCTTCAGCATACTTGTTAGTTAACTGTGAACCTTGCGC 503 Query 7192 TTTCATAACA--TCGTCTGACACATAGTTTTCGGACGCAATCAA 7233 || ||| ||| | | ||| ||||||||| ||||||||||| Sbjct 504 TTCCATCACACGTGGACTG--GTATAGTTTTCAGACGCAATCAA 545 >seq253801 Length=811 Score = 105 bits (116), Expect = 7e-18 Identities = 177/256 (69%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 || || || | ||||||||| | ||| |||| | || || | |||||| | || Sbjct 619 CCATGCGTTAAATGGCCGCCATGAGCTAAGCTCATACCTAGTACGGTATCACCGGCGTTT 560 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 | | |||| |||| ||| |||||||| ||||| | ||| ||||| |||||||| Sbjct 559 AACAATGCTAAAAAAACGGCCGCATTTGCTTGCGAACCAGCATGTGGTTGTACGTTTGCA 500 Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCT 7117 | | ||| ||| ||||| |||||||| ||||| || | | ||| | | || | Sbjct 499 TAGTCAGAACCAAATAGTTCGTTAGCACGGTCAATCGCTAATTGCTCAACAACGTCTACA 440 Query 7118 TTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAA 7177 | | || |||||||| || |||||||||||||| || || || || || || || || Sbjct 439 TGCTCACAACCGCCATAGTAACGTTTGCCCGGATAACCTTCTGCGTATTTATTAGTTAAC 380 Query 7178 ATAGAACCCTGTGCTT 7193 ||||||||||||| Sbjct 379 TGTGAACCCTGTGCTT 364 >seq351952 Length=416 Score = 100 bits (110), Expect = 3e-16 Identities = 133/183 (73%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 65951 TGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAGCGTAC 66010 ||| || || || |||||||| || | | ||| || | |||||| | ||||| ||||| Sbjct 33 TGTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTAC 92 Query 66011 GGCATAACCGGAAACACGGATGGTTAGTTGGGGATATTTTTCTGGATTAACGATTGCATC 66070 || ||||| || ||||| || |||| ||| ||||| || |||||||| | |||||||| Sbjct 93 TGCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATC 152 Query 66071 TTCCAGGGTATTTC--GGTCAAGAACATTTACGTTGAGATGCTGACCACCTTCAACAGTT 66128 | | ||||| ||| | ||||| ||||| | || ||||||||||||| | | Sbjct 153 --CAATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCAATATCT 210 Query 66129 GGC 66131 ||| Sbjct 211 GGC 213 >seq506238 Length=275 Score = 95.1 bits (104), Expect = 1e-14 Identities = 128/177 (72%), Gaps = 6/177 (3%) Strand=Plus/Plus Query 65948 TTGTGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAGCG 66007 || ||| || || || || | |||||| | ||||| || || ||||||| ||||| || Sbjct 48 TTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATGAGTTAAAACG 107 Query 66008 TACGGCATAACCGGAAACACGGATGGTTAGTTGGGGATATTTTTCTG---GATTAACGAT 66064 || || ||||| || ||||| || |||| ||| ||||||||||| | | ||||| Sbjct 108 CACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGTGTTTAAC--- 164 Query 66065 TGCATCTTCCAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACCACCTTC 66121 |||||||||| || | || | ||||| ||||| | ||| ||||||||||| Sbjct 165 AGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCACCTTC 221 >seq466369 Length=706 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 6985 ATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGG 7044 |||||| || || | | ||| |||||| || |||||||||||||| ||||| || Sbjct 363 ATCACCTGGTTTAACTAATGCCATGTAAACAGCAGCATTTGCTTGTGAACCAGAATGTGG 422 Query 7045 TTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTC 7104 ||| || || ||| ||| || ||||| || |||||||| || ||||| || ||| Sbjct 423 TTGTACATTCGCGTAATCAGCACCAAACAATTGCTTAGCACGTTCGATTGCTAGAGACTC 482 Query 7105 GATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATA 7164 ||| | | | || |||||||| || |||||||| || || || || ||||| Sbjct 483 TGCAATATCAACATACTCACAACCGCCATAGTAGCGTTTGCCTGGGTAGCCTTCTGCATA 542 Query 7165 CTTGTTGGTAAAAATAGAACCCTGTGCTTTCATAAC 7200 ||| || |||| ||| || || |||| ||| || Sbjct 543 CTTATTAGTAAGCTGAGAGCCTTGAGCTTCCATTAC 578 >seq512778 Length=498 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 7034 CCGGAATGAGGTTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATT 7093 ||||| || || || ||||| ||| ||| | | ||||||| ||| ||||| || || Sbjct 484 CCGGAGTGCGGCTGCACGTTGGCGTAATCGGCGCCGAACAGTTGTTTGGCACGGTCGATG 425 Query 7094 GCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATAT 7153 ||||| | ||| | || || | | | |||||||||| || || || |||||||| || Sbjct 424 GCCAGTTGCTCAACTTTGTCCACATGTTCGCAGCCGCCGTAGTAGCGCTTGCCCGGGTAG 365 Query 7154 CCCTCAGCATACTTGTTGGT 7173 || || || ||||||||||| Sbjct 364 CCTTCGGCGTACTTGTTGGT 345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551715144095920