Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq496362 179 3e-40 >seq496362 Length=882 Score = 179 bits (198), Expect = 3e-40 Identities = 520/781 (67%), Gaps = 37/781 (5%) Strand=Plus/Minus Query 12911 GAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTT---TTTACACCCT 12967 ||||| | |||||||| ||||| || ||| || | ||||| || || ||| Sbjct 876 GAAATCATGTCCATAAAGTCGAATGGGTTTGGCGTG---TTGTATTCACGTTCGCAACCT 820 Query 12968 AATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAAT-CACAGTT 13026 | ||||| ||| | ||| || | |||||||||| || || ||||||||| | || || Sbjct 819 AGTTCTACTAAAAGTCTATCGGTTACAAACTCTAAATATTGCGTCATTAAATTCGCA-TT 761 Query 13027 CATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGC 13086 ||| || ||||| ||||||| | | |||||| | ||| | | |||| || | | || Sbjct 760 CATACCAATTAAACTTACAGGAAGTGATTCTGTAATAAATTCTCTTTCGATGTTTAAGGC 701 Query 13087 TTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATA------GATGCTT 13140 || |||| ||| ||| ||| || || ||| || || |||| | Sbjct 700 GTCAATAATAATGGTTCTGATTCTGT---CTTTTGGCACTTTATTTACCAAGTGATGTTG 644 Query 13141 AAACATCATACA-TGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTG 13199 || || || ||| ||||||||||| | ||||| || | | || | ||||||| Sbjct 643 GTGCAA-ATGCACTGCGAAATCACAGTGAACACCTTCGTCACGAGAAATCAATTCGTTTG 585 Query 13200 AAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAAC 13259 | ||||| | || ||||| | ||||||||||| | ||| || || | | ||| | || Sbjct 584 AGAATGTCAATCCTGGCATCAAACCTCGTTTTTTCAACCAGAAAATGGAACAAAAAGCAC 525 Query 13260 CCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTAT 13319 | || || || |||||||| ||||||||||| || ||||| || | | || | | Sbjct 524 CTGAGAAGAAAATTCCTTCCACTGCTGCAAAAGCAATCAA----TCGCTCTGCGAAAGAA 469 Query 13320 TTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTT-TTGTTTAACGCAGTTCATATTT 13378 | | | || ||||| | | ||||||| ||||| || || | |||| | | | Sbjct 468 TCTGA--ATCAATCCATTGAATTGCCCAGTCCGCTTTCTTTTTGATAGCAG-GAAAAACT 412 Query 13379 TCTATTGCGTTAAATAAAT--AAtttttttCCTTACTGTCTAAAATATAAGTATCTATCA 13436 |||| |||||| ||||||| ||| | | ||| |||| | |||||| || || | Sbjct 411 TCTAATGCGTTGAATAAATCGGCTTTCTCTGCTT--CGTCTTTTACATAAGTGTCGATTA 354 Query 13437 ATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATA-AAAACAT 13495 | ||| |||| |||| ||||||||||||||| |||||||||||||| ||| || Sbjct 353 ACAAGGAATACGTTTCGCTGTGAATATTTTCCATCATGATTTGGAAACCATAGAAAGAAT 294 Query 13496 CTAGCCTCTG-ATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTAT 13554 | || || | ||| || ||||| ||| |||| || | ||||| || || || Sbjct 293 TTCGCTTCAGCATA-TTGCACTTCATTTACAAAGTTTTCAGCAAGATTTTCATTTACAAT 235 Query 13555 CCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGA 13614 ||||| ||| || ||||| || | ||||| || ||||| | || ||||| || Sbjct 234 TCCGTCTGAAGCGGCGAAAAATGCTAAAATGTGTTTGATAAAGTATTGTTCGTCTTTATT 175 Query 13615 CAACT--TTA-ACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAA 13671 ||||| ||| ||| || ||||||| ||| ||||| | || || | ||||| || Sbjct 174 CAACTTGTTATTCCAGTCGTTTAAATCTTGTGACAAATCAATTTCTTCGGCAGTCCAGAA 115 Query 13672 A 13672 | Sbjct 114 A 114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428222149245804