Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_005260.1
Length=233234
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 143 4e-29
seq450559 127 3e-24
seq250551 118 2e-21
>seq449735
Length=3187
Score = 143 bits (158), Expect = 4e-29
Identities = 309/457 (68%), Gaps = 4/457 (1%)
Strand=Plus/Minus
Query 43574 GGACTAAAGAGCGTGATATAGTCGTCATTTTTCAGACGCTCGAAAAACAGCTTGTTGATT 43633
|| ||||| | || || |||||||| || | | |||| | | | || || || |
Sbjct 488 GGGCTAAACAAGGTAATGTAGTCGTCTTTAATTAAACGCGAGTACATTAGTTTATTAAAC 429
Query 43634 TGGATACCGTAGTCAAGCTGGCGAATTCGATTTTCTTCCACGCCCTTGTTGTTTTTCAGA 43693
|| | ||||| || | || || | || || || || || || ||| ||||| ||
Sbjct 428 TGTACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAGT 369
Query 43694 ACAAGGATTTTTTCAACTTCAAGATGCCACATTGGATAGTAAAGAGTAGCAGCGCCACCG 43753
|| | | ||||| ||||| | |||||| | || ||| | | || || ||||| ||
Sbjct 368 ACTAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAGGTTGCTGCGCCGCCA 309
Query 43754 CGTACACCACCCTGTGAGCAACTTTTTACCGCAGTCTGGAAATATTTCCAGAACGGAATA 43813
|||||||| || || || || ||||| ||||| || || || | || | || ||||||
Sbjct 308 CGTACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAATA 249
Query 43814 ATACCAGTGTGGCGAACTTCACCACTTCGAATGCGAGAACCTTCGGCACGAATAGCG-CC 43872
||| || ||| |||| ||| | |||||| | ||| |||||||| ||| ||
Sbjct 248 CAACCCGTATGGTACGCTTCGCCATTGCGAATGTGGCTACCCAGTGCACGAAT-GCGACC 190
Query 43873 ACCGTTGATACCGATACCAGCGCGTTTGCTA-ATATAGTCAACGATTGAACTTGCGGTAG 43931
|||| || || || || || |||| || | | || | ||| |||| | | ||| |
Sbjct 189 TGCGTTAATGCCAATGCCGGCACGTT-GCGATACGTATTTAACAATTGCAGACGAGGTGG 131
Query 43932 CGTTAATGCTATCGAGTTCGTCGCCGCTTTCGATCTTCACGCATGAGCTAAACTGGCGAG 43991
||||||| ||| || |||||| | || || || || |||||||||||||| |
Sbjct 130 CGTTAATTGAATCAAGGCTGTCGCCACACTCTATTAATACACACGAGCTAAACTGGCGTG 71
Query 43992 TCGGGGTTCGAACACCAGCAAGAATTGGCGTCGGTAG 44028
| || || |||||||| || | ||||||||| |||||
Sbjct 70 TTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAG 34
Score = 95.1 bits (104), Expect = 2e-14
Identities = 115/156 (74%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 40731 TGAAGCTGTTCATCCCGCGCAATCAGACGCATGATCTTAGCGTTGCCTTCCATGATACCA 40790
|| ||| |||||| || ||||| || || || |||||||| |||||||| | ||
Sbjct 2490 TGTAGCGCTTCATCGCGGGCAATAAGCTTGATTATTTTAGCGTTACCTTCCATCAATTCA 2431
Query 40791 CGCTCACCGAATGAGAACGTGCAAGCAAAGCTAACATAGAAACGAATCGCTTCCAAAGCG 40850
|||||| | || | |||| ||| |||||||| ||||| |||||||||||||| |||
Sbjct 2430 CGCTCAGCAAACGCAAACGAGCAGGCAAAGCTGACATAAAAACGAATCGCTTCTAAAATA 2371
Query 40851 TTTACGGCGTGCATTGCGAGATATAACGCTTCTTTT 40886
||||| | |||||| || ||| | |||||||
Sbjct 2370 TTTACCGACATCATTGCCAG--GTAAAGTTTCTTTT 2337
>seq450559
Length=633
Score = 127 bits (140), Expect = 3e-24
Identities = 403/618 (65%), Gaps = 5/618 (1%)
Strand=Plus/Minus
Query 37997 TTTCAACAACTTTATCATAACTCAGAATATCTGGATACATACGCTTAGAAGCGCACTCCA 38056
||||| | || | ||||||| | ||||||||||| ||||| ||| | | | |||| |
Sbjct 628 TTTCA-CTACCTGATCATAATTAAGAATATCTGGGTACATGCGCATGGTTGAGCACGTTA 570
Query 38057 GTGCCAGTTGCTTGATACGATAAAGCGGGTCAGTTGGCTTCAAG-TTGTGTCCGTCTTTC 38115
|||| | || ||| |||| | ||||| | ||| | | || || |||||
Sbjct 569 AGGCCATCTTTTTAATATCATAATTAGCATCAGTCG-CTTTATGATTCACGCCATCTTTA 511
Query 38116 AGAGCAAACACCAGTTTCGGGAACACCGGAGTGATACCCTCTTTGCCAAGTCCAGCCAGT 38175
| |||||||||| ||| || || || | || | | | ||| || | || ||||
Sbjct 510 ATGGCAAACACCAATTTTGGAAAGACTGCTGTTTTGCGATTTTTACCTAAACCCGCCATA 451
Query 38176 CGAACTTTCAAGATCGCTTCCTGAATCAGTTCAGCTTCCCAGCTTTCACCCAGACCAAAG 38235
|| ||| | || |||| || |||||| | | ||||| | || | ||||||
Sbjct 450 CGTACTGTTAACATCGATTGCTGAATTAAACGCGACTCCCACGACACGCCTAAACCAAAA 391
Query 38236 CCGAATGTACAGAAGGGAGTTTGACCGTTCGCGGAGTGAAGAGTGTTCACCTCGTATTCG 38295
|| || ||| || || ||||| || || |||| || | || ||||| || |||||
Sbjct 390 CCAAAGGTAACAAACGGTGTTTGGCCATTAGCGGTATGCAAGGTATTCACTTCATATTCA 331
Query 38296 AGTCCCTGCATTGCATCAT-ACACAGCTTTGTGAGTCTTTGCAATAGCGTATTCTTTCGC 38354
||| ||| | ||| |||| |||| |||| | || | | || || || ||| |
Sbjct 330 AGTGACTGGAATGCGTCATGACACT-CTTTTTCGGTTTGCGTCATGGCATAACCTTCTAC 272
Query 38355 ATCTGGAATTTTCCAATAACGGGCTTCGTCCAAATGCTTTTCATGAGTCATCTTAACATA 38414
|||| | || ||| | || || | ||||||| | | | || | ||| |
Sbjct 271 GTCTGCCACTTGCCATTTTTTAGCGACGCTAAGGTGCTTTTGGTAACTGATTTGCACAAA 212
Query 38415 CGGTGCCAGCACTTCGTCAATACGATTAATTGTGTTGCCGCCGTAAATGTGACTTGCTAC 38474
| || | ||||||||| ||||| ||||| ||| | || || ||||| || || |||||
Sbjct 211 CTCAGCTAACACTTCGTCGATACGGTTAATCGTGGTACCACCATAAATATGGCTCGCTAC 152
Query 38475 TTGCGCAATAATCTGAGCGACTACGGCAGCAGCGGTAGAAATGCTTTTCGGAGTTTCGAT 38534
|| |||||||| || || || |||| || || || || || || | ||| ||
Sbjct 151 CTGAGCAATAATTTGCGCCGTAACAGCAGTGGCAGTTGATATAGACTTAGGCGGTTCTAT 92
Query 38535 CTGTGCATTTCCCATACGGAACCCGCGATCTAACATGCCTTTGACATCTATCAACATGCA 38594
| ||||| ||||| || || || ||||||||| | ||| || | ||||||
Sbjct 91 TTCAGCATTACCCATTTTAAAACCATGAGTTAACATGCCGGCCAAATCAATTAGCATGCA 32
Query 38595 GTTAAACATTGGGAAGAA 38612
||||||||| ||||| ||
Sbjct 31 GTTAAACATCGGGAAAAA 14
>seq250551
Length=853
Score = 118 bits (130), Expect = 2e-21
Identities = 238/348 (68%), Gaps = 9/348 (3%)
Strand=Plus/Minus
Query 37068 ATAACCGCATA-CGCGACGAATAACGTTCATTTTGGTATCGTCATGATTACCACATTTAG 37126
||||||||| | |||||||| |||| || | | | |||||||||||||||||||
Sbjct 737 ATAACCGCACAACGCGACGAGTAACAGACACTCGGCTTGGCTCATGATTACCACATTTAG 678
Query 37127 GACATTCGTACCCTTTGGAAGTAGCAGTGAATTCACCGTGATAGCCACATTCAAAGCAAA 37186
| || | |||| || ||| | | || ||||| | | || || || | ||
Sbjct 677 GGCACACAAACCCCTTACTGGTACAATTAAACTCACCAATAAAACCGCAATCGTAACACT 618
Query 37187 CATCAACAGGAGTATTTGTTCCGTAATACGGTGTGTTCAG--ATAAGCATAATCCCAAAC 37244
|||||| |||||||| || |||||||| || || | |||| |||||||||||
Sbjct 617 CATCAATGGGAGTATTGGTGCCGTAATATGGCAC--TCGGCTATAACTGTAATCCCAAAC 560
Query 37245 GTCTTCCAACGCTTTCAGATTATTTTTCATATTCGGATATTCTCCGTATGAAATAAATCC 37304
|| ||| | ||||| | ||| | | ||| || |||||||| ||||| ||||||| ||
Sbjct 559 GTTTTCGAGCGCTTCAATATTGTGCTGCATGTTGGGATATTCGCCGTAACAAATAAACCC 500
Query 37305 ACC--TGAACTCAGAGGAATAAATTGCTTTTCAAAATCAATCTTGTCATAAGGATTGGTA 37362
|| || | | |||| | | ||||||||||||||| ||| |||||||
Sbjct 499 GCCATTGGCGATGGCTGGATAA--GGTTGTTCAAAATCAATCTTATCAAAAGGATTTACT 442
Query 37363 TTATGACGGACGTCGAGGTGGAAGCTGTTTGTGTAATAATCTTTATCG 37410
|| | || || | ||||||||| || |||||||| |||| |||
Sbjct 441 TTCTTTTCAACATCTAAGTGGAAGCTATTGGTGTAATAGCCTTTGTCG 394
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741319043464480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |