Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq449735 143 4e-29 seq450559 127 3e-24 seq250551 118 2e-21 >seq449735 Length=3187 Score = 143 bits (158), Expect = 4e-29 Identities = 309/457 (68%), Gaps = 4/457 (1%) Strand=Plus/Minus Query 43574 GGACTAAAGAGCGTGATATAGTCGTCATTTTTCAGACGCTCGAAAAACAGCTTGTTGATT 43633 || ||||| | || || |||||||| || | | |||| | | | || || || | Sbjct 488 GGGCTAAACAAGGTAATGTAGTCGTCTTTAATTAAACGCGAGTACATTAGTTTATTAAAC 429 Query 43634 TGGATACCGTAGTCAAGCTGGCGAATTCGATTTTCTTCCACGCCCTTGTTGTTTTTCAGA 43693 || | ||||| || | || || | || || || || || || ||| ||||| || Sbjct 428 TGTACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAGT 369 Query 43694 ACAAGGATTTTTTCAACTTCAAGATGCCACATTGGATAGTAAAGAGTAGCAGCGCCACCG 43753 || | | ||||| ||||| | |||||| | || ||| | | || || ||||| || Sbjct 368 ACTAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAGGTTGCTGCGCCGCCA 309 Query 43754 CGTACACCACCCTGTGAGCAACTTTTTACCGCAGTCTGGAAATATTTCCAGAACGGAATA 43813 |||||||| || || || || ||||| ||||| || || || | || | || |||||| Sbjct 308 CGTACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAATA 249 Query 43814 ATACCAGTGTGGCGAACTTCACCACTTCGAATGCGAGAACCTTCGGCACGAATAGCG-CC 43872 ||| || ||| |||| ||| | |||||| | ||| |||||||| ||| || Sbjct 248 CAACCCGTATGGTACGCTTCGCCATTGCGAATGTGGCTACCCAGTGCACGAAT-GCGACC 190 Query 43873 ACCGTTGATACCGATACCAGCGCGTTTGCTA-ATATAGTCAACGATTGAACTTGCGGTAG 43931 |||| || || || || || |||| || | | || | ||| |||| | | ||| | Sbjct 189 TGCGTTAATGCCAATGCCGGCACGTT-GCGATACGTATTTAACAATTGCAGACGAGGTGG 131 Query 43932 CGTTAATGCTATCGAGTTCGTCGCCGCTTTCGATCTTCACGCATGAGCTAAACTGGCGAG 43991 ||||||| ||| || |||||| | || || || || |||||||||||||| | Sbjct 130 CGTTAATTGAATCAAGGCTGTCGCCACACTCTATTAATACACACGAGCTAAACTGGCGTG 71 Query 43992 TCGGGGTTCGAACACCAGCAAGAATTGGCGTCGGTAG 44028 | || || |||||||| || | ||||||||| ||||| Sbjct 70 TTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAG 34 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 40731 TGAAGCTGTTCATCCCGCGCAATCAGACGCATGATCTTAGCGTTGCCTTCCATGATACCA 40790 || ||| |||||| || ||||| || || || |||||||| |||||||| | || Sbjct 2490 TGTAGCGCTTCATCGCGGGCAATAAGCTTGATTATTTTAGCGTTACCTTCCATCAATTCA 2431 Query 40791 CGCTCACCGAATGAGAACGTGCAAGCAAAGCTAACATAGAAACGAATCGCTTCCAAAGCG 40850 |||||| | || | |||| ||| |||||||| ||||| |||||||||||||| ||| Sbjct 2430 CGCTCAGCAAACGCAAACGAGCAGGCAAAGCTGACATAAAAACGAATCGCTTCTAAAATA 2371 Query 40851 TTTACGGCGTGCATTGCGAGATATAACGCTTCTTTT 40886 ||||| | |||||| || ||| | ||||||| Sbjct 2370 TTTACCGACATCATTGCCAG--GTAAAGTTTCTTTT 2337 >seq450559 Length=633 Score = 127 bits (140), Expect = 3e-24 Identities = 403/618 (65%), Gaps = 5/618 (1%) Strand=Plus/Minus Query 37997 TTTCAACAACTTTATCATAACTCAGAATATCTGGATACATACGCTTAGAAGCGCACTCCA 38056 ||||| | || | ||||||| | ||||||||||| ||||| ||| | | | |||| | Sbjct 628 TTTCA-CTACCTGATCATAATTAAGAATATCTGGGTACATGCGCATGGTTGAGCACGTTA 570 Query 38057 GTGCCAGTTGCTTGATACGATAAAGCGGGTCAGTTGGCTTCAAG-TTGTGTCCGTCTTTC 38115 |||| | || ||| |||| | ||||| | ||| | | || || ||||| Sbjct 569 AGGCCATCTTTTTAATATCATAATTAGCATCAGTCG-CTTTATGATTCACGCCATCTTTA 511 Query 38116 AGAGCAAACACCAGTTTCGGGAACACCGGAGTGATACCCTCTTTGCCAAGTCCAGCCAGT 38175 | |||||||||| ||| || || || | || | | | ||| || | || |||| Sbjct 510 ATGGCAAACACCAATTTTGGAAAGACTGCTGTTTTGCGATTTTTACCTAAACCCGCCATA 451 Query 38176 CGAACTTTCAAGATCGCTTCCTGAATCAGTTCAGCTTCCCAGCTTTCACCCAGACCAAAG 38235 || ||| | || |||| || |||||| | | ||||| | || | |||||| Sbjct 450 CGTACTGTTAACATCGATTGCTGAATTAAACGCGACTCCCACGACACGCCTAAACCAAAA 391 Query 38236 CCGAATGTACAGAAGGGAGTTTGACCGTTCGCGGAGTGAAGAGTGTTCACCTCGTATTCG 38295 || || ||| || || ||||| || || |||| || | || ||||| || ||||| Sbjct 390 CCAAAGGTAACAAACGGTGTTTGGCCATTAGCGGTATGCAAGGTATTCACTTCATATTCA 331 Query 38296 AGTCCCTGCATTGCATCAT-ACACAGCTTTGTGAGTCTTTGCAATAGCGTATTCTTTCGC 38354 ||| ||| | ||| |||| |||| |||| | || | | || || || ||| | Sbjct 330 AGTGACTGGAATGCGTCATGACACT-CTTTTTCGGTTTGCGTCATGGCATAACCTTCTAC 272 Query 38355 ATCTGGAATTTTCCAATAACGGGCTTCGTCCAAATGCTTTTCATGAGTCATCTTAACATA 38414 |||| | || ||| | || || | ||||||| | | | || | ||| | Sbjct 271 GTCTGCCACTTGCCATTTTTTAGCGACGCTAAGGTGCTTTTGGTAACTGATTTGCACAAA 212 Query 38415 CGGTGCCAGCACTTCGTCAATACGATTAATTGTGTTGCCGCCGTAAATGTGACTTGCTAC 38474 | || | ||||||||| ||||| ||||| ||| | || || ||||| || || ||||| Sbjct 211 CTCAGCTAACACTTCGTCGATACGGTTAATCGTGGTACCACCATAAATATGGCTCGCTAC 152 Query 38475 TTGCGCAATAATCTGAGCGACTACGGCAGCAGCGGTAGAAATGCTTTTCGGAGTTTCGAT 38534 || |||||||| || || || |||| || || || || || || | ||| || Sbjct 151 CTGAGCAATAATTTGCGCCGTAACAGCAGTGGCAGTTGATATAGACTTAGGCGGTTCTAT 92 Query 38535 CTGTGCATTTCCCATACGGAACCCGCGATCTAACATGCCTTTGACATCTATCAACATGCA 38594 | ||||| ||||| || || || ||||||||| | ||| || | |||||| Sbjct 91 TTCAGCATTACCCATTTTAAAACCATGAGTTAACATGCCGGCCAAATCAATTAGCATGCA 32 Query 38595 GTTAAACATTGGGAAGAA 38612 ||||||||| ||||| || Sbjct 31 GTTAAACATCGGGAAAAA 14 >seq250551 Length=853 Score = 118 bits (130), Expect = 2e-21 Identities = 238/348 (68%), Gaps = 9/348 (3%) Strand=Plus/Minus Query 37068 ATAACCGCATA-CGCGACGAATAACGTTCATTTTGGTATCGTCATGATTACCACATTTAG 37126 ||||||||| | |||||||| |||| || | | | ||||||||||||||||||| Sbjct 737 ATAACCGCACAACGCGACGAGTAACAGACACTCGGCTTGGCTCATGATTACCACATTTAG 678 Query 37127 GACATTCGTACCCTTTGGAAGTAGCAGTGAATTCACCGTGATAGCCACATTCAAAGCAAA 37186 | || | |||| || ||| | | || ||||| | | || || || | || Sbjct 677 GGCACACAAACCCCTTACTGGTACAATTAAACTCACCAATAAAACCGCAATCGTAACACT 618 Query 37187 CATCAACAGGAGTATTTGTTCCGTAATACGGTGTGTTCAG--ATAAGCATAATCCCAAAC 37244 |||||| |||||||| || |||||||| || || | |||| ||||||||||| Sbjct 617 CATCAATGGGAGTATTGGTGCCGTAATATGGCAC--TCGGCTATAACTGTAATCCCAAAC 560 Query 37245 GTCTTCCAACGCTTTCAGATTATTTTTCATATTCGGATATTCTCCGTATGAAATAAATCC 37304 || ||| | ||||| | ||| | | ||| || |||||||| ||||| ||||||| || Sbjct 559 GTTTTCGAGCGCTTCAATATTGTGCTGCATGTTGGGATATTCGCCGTAACAAATAAACCC 500 Query 37305 ACC--TGAACTCAGAGGAATAAATTGCTTTTCAAAATCAATCTTGTCATAAGGATTGGTA 37362 || || | | |||| | | ||||||||||||||| ||| ||||||| Sbjct 499 GCCATTGGCGATGGCTGGATAA--GGTTGTTCAAAATCAATCTTATCAAAAGGATTTACT 442 Query 37363 TTATGACGGACGTCGAGGTGGAAGCTGTTTGTGTAATAATCTTTATCG 37410 || | || || | ||||||||| || |||||||| |||| ||| Sbjct 441 TTCTTTTCAACATCTAAGTGGAAGCTATTGGTGTAATAGCCTTTGTCG 394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741319043464480