Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq152719 188 2e-42 seq152718 163 7e-35 seq496362 120 7e-22 >seq152719 Length=2073 Score = 188 bits (208), Expect = 2e-42 Identities = 182/234 (78%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | | || || ||||| | || ||||||||||| || ||||| || Sbjct 497 ATACCTCCTCTCAAGCGCAGCACAAGATGGATGGTGGATTCTTTCTGGATGTTATAATCT 556 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | ||| ||||| || || || || ||||| || |||||||| ||||||||| Sbjct 557 GACATGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGA 616 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || |||||||| ||||| ||||||||||| || | ||| ||||| ||||| Sbjct 617 GGGATGCCCTCCTTATCCTGGATCTTAGCTTTTACATTCTCAATGGTGTCGCTGGGTTCA 676 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || |||||||||||||| || || || ||||| |||||||| ||| Sbjct 677 ACCTCCAGAGTGATAGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCATCTTG 730 Score = 181 bits (200), Expect = 2e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || ||||| | || || |||||||| || || ||||| Sbjct 41 ATACCTCCTCTCAGGCGGAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCG 100 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | |||||||| || || || || ||||| || |||||||| ||||||||| Sbjct 101 GAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGA 160 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || |||||||| ||||| ||||| ||||| || | ||| ||||| ||||| Sbjct 161 GGGATGCCCTCCTTATCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGTTCA 220 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || | ||||||||| || || || ||||| |||||||| Sbjct 221 ACCTCCAGAGTGATGGACTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 270 >seq152718 Length=3078 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || | ||| |||| | || ||||| | || || |||||||| || | ||||| Sbjct 2144 ATACCTCTTCTCAGCCGCAAGACAAGATGGAGGGTGGACTCTTTCTGGATGCTGTAGTCG 2203 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||| ||||| || || || || ||||| || ||||| | || |||| | Sbjct 2204 GAGAGAGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTGTACTGTTCAGAA 2263 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| |||||||||||||| |||| ||||| || | ||| ||||| ||||| Sbjct 2264 GGGATGCCTTCCTTATCCTGAATCTTAACTTTGACATTCTCAATGGTGTCGCTGGGTTCA 2323 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||||||||| || || || ||||| |||||||| Sbjct 2324 ACCTCCAGAGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 2373 Score = 116 bits (128), Expect = 8e-21 Identities = 168/235 (71%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || ||||| | || || || ||||||| ||||| ||| Sbjct 2600 ATCCCTCCTCTCAGGCGGAGCACAAGATGGAGGGTGGAGTCCCTCTGAATGTTATAATCA 2659 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA-ATTAGCCTCTGTTGATCAGG 104448 || | || ||| ||||| || || | || |||||| || |||||||| |||||||| Sbjct 2660 GACATGGTGTGACCATCTTCCAGCTGCCTGCC-GCAAAAGATCAGCCTCTGCTGATCAGG 2718 Query 104449 AGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 ||| ||||| ||||||| ||||| ||||| |||| || ||||| ||| ||||| Sbjct 2719 AGGGTAGCCTTCCCTATCCTGGATCTTAGCTTTGACATACTCAACGGTGCTGCTGGGTTC 2778 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || ||||||| ||| || | ||||| |||||||| ||| Sbjct 2779 AACATCCAGAGTGATAGTCT------TAATAGTCCTCACAAAGATCTGCATCTTG 2827 Score = 86.0 bits (94), Expect = 1e-11 Identities = 147/212 (69%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || ||||| || | | || ||||| || |||| | || || Sbjct 1935 AGCACGAGATG-AGGGTGGATTCCTTTTTGCTGTTGTAGTCGGAGGGAGTCCGGCCATCA 1993 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || ||||| || | || || || ||||| || || ||| | || |||| |||||| Sbjct 1994 TCCAGCTGTTTGCCCTCGAAGATCAGGCTCTGCTGCTCTGGATGGATGCCTTTCTTATCC 2053 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| ||| ||||| || | ||| || || | || | ||| || || | ||| Sbjct 2054 TGAATCTTGTATTTGACATTCTCGATGGTGTCACTGGACTCAATCTCAAGAGTGGTGGTC 2113 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || | || || || ||||| ||||| || Sbjct 2114 TTAGCAATCAGGGTCTTCACAAAGATCTGGAT 2145 >seq496362 Length=882 Score = 120 bits (132), Expect = 7e-22 Identities = 350/529 (66%), Gaps = 25/529 (5%) Strand=Plus/Plus Query 268765 TTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTAAA 268824 ||| ||||||| |||||| | ||| |||| | || |||| || ||||| || | Sbjct 114 TTTCTGGACTGCCGAAGAAATTGATTTGTCACAAGATTTAAACGACTGGAATAAC----A 169 Query 268825 ACCAGAAGAAAGAAGATTTATATCTTAT-------ATTCTTGCGTTTTTTGCAGTTAGTG 268877 | ||| ||||| || ||| |||| ||| | || ||||| || | | | Sbjct 170 AGTTGAATAAAGACGAACAATACTTTATCAAACACATTTTAGCATTTTTCGCCGCTTCAG 229 Query 268878 ATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAA-GAGGTACAGATTCCTGAA 268936 | || || || || |||||||| | || || || ||| || || || || | ||||| Sbjct 230 ACGGAATTGTAAATGAAAATCTTGCTGAAAACTT-TGTAAATGAAGTGCAATATGCTGAA 288 Query 268937 GCCAGATGTTTT-TACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995 || | || ||| || || ||||| || || ||||||||||| || | ||| Sbjct 289 GCGAAATTCTTTCTATGGTTTCCAAATCATGATGGAAAATATTCACAGCGAAACGTATTC 348 Query 268996 TCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTT--TCTTCT 269053 | ||||| || |||||| || | || | | | | ||||| | | |||| || | Sbjct 349 CTTGTTAATCGACACTTATGTAAAAGA---CGAAGCAGAGAAA-GCCGATTTATTCAACG 404 Query 269054 -ATGAGAACTATGGACTG-TGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACG 269111 || |||| | | ||| | | | ||| ||| | || ||||| | ||||||| | Sbjct 405 CATTAGAAGTTTTTCCTGCTATCAAAAAGAAAGCGGACTGGGCAATTCAATGGATT---G 461 Query 269112 ATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTT 269171 || | ||| || ||| | || |||||||||| || || ||||| || ||||| | Sbjct 462 ATTCAGATTCTTTCGCAGAGCGATTGATTGCTTTTGCAGCAGTGGAAGGAATTTTCTTCT 521 Query 269172 CGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTT 269231 | || ||||| | || || |||||||| ||| |||| | ||||||||||| || | Sbjct 522 CAGGTGCTTTTTGTTCCATTTTCTGGTTGAAAAAACGAGGTTTGATGCCAGGATTGACAT 581 Query 269232 TCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGC 269280 |||| ||||||||||| | ||||||||| | ||||| || ||||| Sbjct 582 TCTCAAACGAATTGATTTCTCGTGACGAAGGTGTTCACTGTGATTTCGC 630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1143646041049416