Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq152719 188 2e-42
seq152718 163 7e-35
seq496362 120 7e-22
>seq152719
Length=2073
Score = 188 bits (208), Expect = 2e-42
Identities = 182/234 (78%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| | | || || ||||| | || ||||||||||| || ||||| ||
Sbjct 497 ATACCTCCTCTCAAGCGCAGCACAAGATGGATGGTGGATTCTTTCTGGATGTTATAATCT 556
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| | || | ||| ||||| || || || || ||||| || |||||||| |||||||||
Sbjct 557 GACATGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGA 616
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || || || |||||||| ||||| ||||||||||| || | ||| ||||| |||||
Sbjct 617 GGGATGCCCTCCTTATCCTGGATCTTAGCTTTTACATTCTCAATGGTGTCGCTGGGTTCA 676
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
||||| || || |||||||||||||| || || || ||||| |||||||| |||
Sbjct 677 ACCTCCAGAGTGATAGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCATCTTG 730
Score = 181 bits (200), Expect = 2e-40
Identities = 178/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| || | || || ||||| | || || |||||||| || || |||||
Sbjct 41 ATACCTCCTCTCAGGCGGAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCG 100
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| ||||| | |||||||| || || || || ||||| || |||||||| |||||||||
Sbjct 101 GAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGA 160
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || || || |||||||| ||||| ||||| ||||| || | ||| ||||| |||||
Sbjct 161 GGGATGCCCTCCTTATCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGTTCA 220
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || || || | ||||||||| || || || ||||| ||||||||
Sbjct 221 ACCTCCAGAGTGATGGACTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 270
>seq152718
Length=3078
Score = 163 bits (180), Expect = 7e-35
Identities = 174/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || | ||| |||| | || ||||| | || || |||||||| || | |||||
Sbjct 2144 ATACCTCTTCTCAGCCGCAAGACAAGATGGAGGGTGGACTCTTTCTGGATGCTGTAGTCG 2203
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| ||||| | ||| ||||| || || || || ||||| || ||||| | || |||| |
Sbjct 2204 GAGAGAGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTGTACTGTTCAGAA 2263
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| |||||||||||||| |||| ||||| || | ||| ||||| |||||
Sbjct 2264 GGGATGCCTTCCTTATCCTGAATCTTAACTTTGACATTCTCAATGGTGTCGCTGGGTTCA 2323
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || || || ||||||||||| || || || ||||| ||||||||
Sbjct 2324 ACCTCCAGAGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 2373
Score = 116 bits (128), Expect = 8e-21
Identities = 168/235 (71%), Gaps = 8/235 (3%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| || | || || ||||| | || || || ||||||| ||||| |||
Sbjct 2600 ATCCCTCCTCTCAGGCGGAGCACAAGATGGAGGGTGGAGTCCCTCTGAATGTTATAATCA 2659
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA-ATTAGCCTCTGTTGATCAGG 104448
|| | || ||| ||||| || || | || |||||| || |||||||| ||||||||
Sbjct 2660 GACATGGTGTGACCATCTTCCAGCTGCCTGCC-GCAAAAGATCAGCCTCTGCTGATCAGG 2718
Query 104449 AGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508
||| ||||| ||||||| ||||| ||||| |||| || ||||| ||| |||||
Sbjct 2719 AGGGTAGCCTTCCCTATCCTGGATCTTAGCTTTGACATACTCAACGGTGCTGCTGGGTTC 2778
Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| || || || ||||||| ||| || | ||||| |||||||| |||
Sbjct 2779 AACATCCAGAGTGATAGTCT------TAATAGTCCTCACAAAGATCTGCATCTTG 2827
Score = 86.0 bits (94), Expect = 1e-11
Identities = 147/212 (69%), Gaps = 1/212 (0%)
Strand=Plus/Plus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | || ||||| || | | || ||||| || |||| | || ||
Sbjct 1935 AGCACGAGATG-AGGGTGGATTCCTTTTTGCTGTTGTAGTCGGAGGGAGTCCGGCCATCA 1993
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| || ||||| || | || || || ||||| || || ||| | || |||| ||||||
Sbjct 1994 TCCAGCTGTTTGCCCTCGAAGATCAGGCTCTGCTGCTCTGGATGGATGCCTTTCTTATCC 2053
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|||||||| ||| ||||| || | ||| || || | || | ||| || || | |||
Sbjct 2054 TGAATCTTGTATTTGACATTCTCGATGGTGTCACTGGACTCAATCTCAAGAGTGGTGGTC 2113
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||| || | || || || ||||| ||||| ||
Sbjct 2114 TTAGCAATCAGGGTCTTCACAAAGATCTGGAT 2145
>seq496362
Length=882
Score = 120 bits (132), Expect = 7e-22
Identities = 350/529 (66%), Gaps = 25/529 (5%)
Strand=Plus/Plus
Query 268765 TTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTAAA 268824
||| ||||||| |||||| | ||| |||| | || |||| || ||||| || |
Sbjct 114 TTTCTGGACTGCCGAAGAAATTGATTTGTCACAAGATTTAAACGACTGGAATAAC----A 169
Query 268825 ACCAGAAGAAAGAAGATTTATATCTTAT-------ATTCTTGCGTTTTTTGCAGTTAGTG 268877
| ||| ||||| || ||| |||| ||| | || ||||| || | | |
Sbjct 170 AGTTGAATAAAGACGAACAATACTTTATCAAACACATTTTAGCATTTTTCGCCGCTTCAG 229
Query 268878 ATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAA-GAGGTACAGATTCCTGAA 268936
| || || || || |||||||| | || || || ||| || || || || | |||||
Sbjct 230 ACGGAATTGTAAATGAAAATCTTGCTGAAAACTT-TGTAAATGAAGTGCAATATGCTGAA 288
Query 268937 GCCAGATGTTTT-TACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995
|| | || ||| || || ||||| || || ||||||||||| || | |||
Sbjct 289 GCGAAATTCTTTCTATGGTTTCCAAATCATGATGGAAAATATTCACAGCGAAACGTATTC 348
Query 268996 TCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTT--TCTTCT 269053
| ||||| || |||||| || | || | | | | ||||| | | |||| || |
Sbjct 349 CTTGTTAATCGACACTTATGTAAAAGA---CGAAGCAGAGAAA-GCCGATTTATTCAACG 404
Query 269054 -ATGAGAACTATGGACTG-TGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACG 269111
|| |||| | | ||| | | | ||| ||| | || ||||| | ||||||| |
Sbjct 405 CATTAGAAGTTTTTCCTGCTATCAAAAAGAAAGCGGACTGGGCAATTCAATGGATT---G 461
Query 269112 ATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTT 269171
|| | ||| || ||| | || |||||||||| || || ||||| || ||||| |
Sbjct 462 ATTCAGATTCTTTCGCAGAGCGATTGATTGCTTTTGCAGCAGTGGAAGGAATTTTCTTCT 521
Query 269172 CGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTT 269231
| || ||||| | || || |||||||| ||| |||| | ||||||||||| || |
Sbjct 522 CAGGTGCTTTTTGTTCCATTTTCTGGTTGAAAAAACGAGGTTTGATGCCAGGATTGACAT 581
Query 269232 TCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGC 269280
|||| ||||||||||| | ||||||||| | ||||| || |||||
Sbjct 582 TCTCAAACGAATTGATTTCTCGTGACGAAGGTGTTCACTGTGATTTCGC 630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1143646041049416
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |