Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_005859.1 Length=121750 Score E Sequences producing significant alignments: (Bits) Value seq426744 208 6e-49 seq507483 181 8e-41 seq506238 138 9e-28 seq435060 122 7e-23 seq466100 104 2e-17 seq450559 104 2e-17 seq351952 96.9 3e-15 >seq426744 Length=341 Score = 208 bits (230), Expect = 6e-49 Identities = 239/315 (76%), Gaps = 10/315 (3%) Strand=Plus/Plus Query 101607 ATTAAGACGCAGCGTAAGTACCAGATACAACGCCATT---TGCAAAGTAACGTTGCAGGT 101663 |||| | || ||||| ||||||| || | || || ||||| |||||| |||| Sbjct 29 ATTACGCTGCTGCGTATGTACCAGTAACGATACCTTTACCTGCAATCATACGTTGTAGGT 88 Query 101664 TAACACGCTGAGTAACGTAGTACGCATCACGCTGTTTACCAGCTTGGCGCTCACGTTCAA 101723 ||| ||| ||||| |||||||| |||||||| || ||||||||||| ||||||||||| | Sbjct 89 TAAGACGTTGAGTTACGTAGTATGCATCACGTTGCTTACCAGCTTGACGCTCACGTTCTA 148 Query 101724 CAGTAACAGCGCGCTGACGTGGCATTACGAAGTTATCTTTATAAACAATAACTGCGAACT 101783 | |||| || || ||||| || | |||||||| || ||||| ||| ||| | Sbjct 149 CTGTAATAGTACGTTGACGAGGAACAACGAAGTTCTCACGGTAAACGATAGTACAGAATT 208 Query 101784 CTG--CTGAGTTAGCTTTAGCTGGGAAATACTCGGAAACTACAACCGGCAGACCATAAAT 101841 ||| |||| ||||||||||||||| || | ||||||| ||| | ||||| || || Sbjct 209 CTGAACTGA--CAGCTTTAGCTGGGAAGTAGTTAGAAACTAGAACTGCTAGACCGTAGAT 266 Query 101842 ACGACCAACCTGACCTTGCAG-TTTAAC-AG-AATCGTTACCAACCTGGGCAACATCCTG 101898 ||||||||| || ||||| || |||||| || ||| |||||| ||| ||||||||| Sbjct 267 ACGACCAACTTGTCCTTGAAGTTTTAACGAGTTATCCGCACCAACTTGGTTAACATCCTG 326 Query 101899 CCATTCTTCATCTTC 101913 ||||||||||||||| Sbjct 327 CCATTCTTCATCTTC 341 >seq507483 Length=1083 Score = 181 bits (200), Expect = 8e-41 Identities = 565/859 (66%), Gaps = 33/859 (4%) Strand=Plus/Plus Query 72368 TAAACTGACGGATACTGGAGCAGATTCTACGGATGCAGAAGCTCTAAATGAACTGGCTAC 72427 |||| | || | |||||| ||| ||||| |||||||||| ||| | |||| | Sbjct 227 TAAATTTACAGGTACTGGTGCAATCTCTACTGATGCAGAAGTACTAGAAAAACTAGG--- 283 Query 72428 GCAGCATCCAATT-GCTAA--AACT--CTGCTAGAGATTCGTAAGCTGACTAAGCTGATC 72482 || | || || |||| || | || || |||||||| ||| || || | | Sbjct 284 --AGAAACCCATGAGCTACCCAAGTTACTACTGGAGATTCGCAAGGCAACAAAAGTACTT 341 Query 72483 TCTACTTATGTTGAGAAGATTCTACTGAGTATTGATGCAGATGGTTGCATT--CGTACTG 72540 ||||||||| ||||| || | ||||| ||||||| |||| ||||| | Sbjct 342 AATACTTATGTAATTAAGATGTTAGACAACATTGACCGAGATGGT--CATTTACGTACAG 399 Query 72541 GTTTCCATGAACATATGACTACTTCTGGTCGTCTGAGTTCTTCTGGTAAACTGAACCTGC 72600 | || |||| | ||| ||||| |||||||| ||||| || || ||||| ||| | | Sbjct 400 GGTTTAGCCAACACACGACCACTTCGGGTCGTCTAAGTTCATCAGGCAAACTTAACTTAC 459 Query 72601 AACAGTTACCCCGTGATGAATCTATTATCAAGGGTTGTGTAGTAGCTCCTCCTGGGTATC 72660 | || | || |||||||| |||| | ||||| ||| | ||||||||| | || ||| Sbjct 460 AGCAACTTCCTCGTGATGATGCTATGGTTAAGGGATGTATTGTAGCTCCTGCGGGCTATA 519 Query 72661 GTGTAATCGCGTGGGACTTAACAACTGCGGAAGTTTATTATGCTGCTGTTCTATCTGGTG 72720 | ||| | || ||| | |||||||||| | | || || | || ||| | Sbjct 520 GAGTAGTAGCCGTGGATATGGAAACTGCGGAAATGTGGGTAGCAGCAGCACTTAGTGGGG 579 Query 72721 ATAGAA-ATATGCAACAGGTATTT-ATCAACATGAGAAATGAACCCGATAAATACCCAGA 72778 ||| || | | || | || ||| | | | ||| | | | | || | || Sbjct 580 ATAAAAGACCTACAGAAAGTGTTTTAACGATATGGCTGACAAGTCTATTGTATCTGCCGA 639 Query 72779 CTTCCACTCCAACATCGCACACATGGTGTTTAAGCTGCAATGCGAACCCCGTGATGTTAA 72838 ||||||| | || |||||||||||||| |||| | || | | | ||| | | Sbjct 640 CTTCCACAGCTCTATTGCACACATGGTGTTCAAGCCAAACTGTCTAGCGCATGAATT--A 697 Query 72839 AAAGCT--GTTCCCAGCTCTGCGTCAGGCTGCTAAAGCAATCACCTTCGGTATTCTGTAT 72896 |||||| |||||| || | ||||||||| ||||||| || | ||||||||||| | Sbjct 698 AAAGCTATGTTCCCTGCATTACGTCAGGCTTCTAAAGCTATTTCATTCGGTATTCTATTC 757 Query 72897 GGTTCTGGCCCAGCTAAAGTAGCGCATTCTGTTAACGAAGCATTACTAGAACAAGCAGCC 72956 ||| ||| |||||||| ||||| | ||| |||| || | || | || ||| | Sbjct 758 GGTAGTGGACCAGCTAAGGTAGCAGAATCTATTAATGAGTCGCTATTTGAGCAACATGTA 817 Query 72957 AAGACGGGCGAACCGTTTGTTGAATGTACTGTTGCAGAT---GCTAAAGAGTACATTGAG 73013 |||||||| || | | || || || | ||| |||||||| |||||||| Sbjct 818 AAGACGGGTTGCCCTTACG---AACCTATTGATAAAGAAACAGCTAAAGATTACATTGAT 874 Query 73014 ACTTACTTCGGTCAGTTCCCACAGCTTAAGCGTTGGATTGATAAGTGCCACGATCAGATC 73073 |||||| ||| ||||| | || || ||||||||||| || ||| || ||||| Sbjct 875 GTTTACTTTAGTCGTTTCCCTGACCTGAAACGTTGGATTGACGCGTCCCATGAGCAGATT 934 Query 73074 AAGAATCATGGATTTATCTATAGTCACTTTGGTCGTAAACGTCGTCTGCATAATATCCAT 73133 | ||||| ||||| ||||| ||||| || ||||||||| | || | |||||||| Sbjct 935 CTACAGCATGGGTTTATTTATAGCCACTTCGGACGTAAACGTAGACTACGTAATATCCGC 994 Query 73134 TC--CGAAGACCGTG-GTGTTCAGGGTGAAGAAATT-CGTTCTGGATTTAATGCAATCAT 73189 || || | | | |||| |||||||| || ||||| || || || || ||||| Sbjct 995 TCAGCGTCTAGAGAGACTGTT---GGTGAAGAGCTTACGTTCAGGCTTCAACGCTATCAT 1051 Query 73190 TCAGTCTGCTTCTTCTGAT 73208 ||| || || |||||| Sbjct 1052 TCAAGGGGCATCATCTGAT 1070 >seq506238 Length=275 Score = 138 bits (152), Expect = 9e-28 Identities = 135/172 (78%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 27669 GTAAATGTACGACTAATAACGTCGTTCTGCTGTTCACGCGTCAGTGCGTTAAAACGCACA 27728 ||||||||||| | | ||||| | ||| ||||| | || | || |||||||||||| Sbjct 52 GTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATGAGTTAAAACGCACT 111 Query 27729 GCGTACCCTGAAACACGGATAGTTAATTGAGGGTATTTTTCAGGATGTTTCTGTGCATC- 27787 ||||| ||||| ||||| ||||||||||| || ||||||||||| ||||| ||||| Sbjct 112 GCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGTGTTTAACAGCATCT 171 Query 27788 -CAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGTTGACCACCTTC 27838 | || | | ||||||| ||||||||| || |||| |||||||||||||| Sbjct 172 TCCAATGTT--TCACGACGTAACACATTCACGTTTAAATGTTGACCACCTTC 221 >seq435060 Length=507 Score = 122 bits (134), Expect = 7e-23 Identities = 307/466 (66%), Gaps = 17/466 (4%) Strand=Plus/Plus Query 72768 AAATACCCAGACTTCCACTCCAACATCGCACACATGGTGTTTAAGCTGCAATGCGAACCC 72827 || || || ||||||||| ||||| || |||||||||||||| || | || | || Sbjct 44 AAGTATCCCGACTTCCACAGTAACATAGCTCACATGGTGTTTAACCTACCTTGTAAGCCT 103 Query 72828 CGTGATGTTAAAAAGCTGTTCCCAGCTCTGCGTCAGGCTGCTAAAGCAATCACCTTCGGT 72887 || ||||| || || |||||||| || | |||||||| || || || || || ||| Sbjct 104 GAGGAAGTTAAGAAACTATTCCCAGCCCTAAGGCAGGCTGCGAAGGCGATAACATTTGGT 163 Query 72888 ATTCTGTATGGTTCTGGCCCAGCTAAAGTAGCGCATTCTGTTAACGAAGCATTACTAGAA 72947 ||||| | ||||| || |||| ||||| | |||||| ||| |||||| Sbjct 164 ATTCTATTCGGTTCAGGAGCAGCATCTGTAGCAGAGCAAGTTAACTTAGCTAAGCTAGAA 223 Query 72948 CAAGCAGCCAAGACGGGCGAACCGTTTGTTGAATGTACTGTTGCAGATGCTAAAGAGTAC 73007 || | ||| | | ||| |||||| | | || || ||| Sbjct 224 TTAG------------GTGAAGCA---GCTGATTGTACTAAAGAAATCGCCGCAGGTTAC 268 Query 73008 ATTGAGACTTACTTCGGTCAGTTCCCACAGCTTAA-GCGTTGGATTGATAAGTGCCACGA 73066 || || |||||| | |||||| ||||| |||| |||||||| || || || Sbjct 269 ATCGAAGTGTACTTCAAGCGGTTCCCTAGACTTAAAGCGT-GGATTGATTCTTGTCATGA 327 Query 73067 TCAGATCAAGAATCATGGATTTATCTATAGTCACTTTGGTCGTAAACGTCGTCTGCATAA 73126 | | ||| | | |||||||| || | ||||| || ||||| ||| | | || || Sbjct 328 TGAAATCCGTCAGAAAGGATTTATATACAACCACTTCGGCCGTAAGCGTAGATTACACAA 387 Query 73127 TATCCATTCCGAAGACCGTGGTGTTCAGGGTGAAGAAATTCGTTCTGGATTTAATGCAAT 73186 ||| ||| || | || ||| |||| |||||| ||||| ||||||||||| || Sbjct 388 CATCTCTTCTAGCGATAGAGGCGTTGTAGGTGGAGAAATCCGTTCAGGATTTAATGCTAT 447 Query 73187 CATTCAGTCTGCTTCTTCTGATAGTCTCCTTTTAGGTGCTGTAGAT 73232 ||| |||||||| || |||||| | || |||| ||||||||| Sbjct 448 CATACAGTCTGCGTCATCTGATCACTTACTGCTAGGAGCTGTAGAT 493 >seq466100 Length=556 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 102346 ATCCGGTTCAACCAGCATAGTAAGAATCTTACTGGACATCGGCAGTTCTTCGAACAGTGC 102405 ||| || |||| || |||||||||||||||||| | ||| || || |||||||| | Sbjct 5 ATCTGGCTCAATCATCATAGTAAGAATCTTACTAGTCATTGGAAGCTCTTCGAATAAGTT 64 Query 102406 GCCAACTACCAGCTCTTTCTGCAGGTCGCGGATAATACGCTGAGAGAAAATAGTTTCATA 102465 || || |||| ||||||| || || | ||||| |||||||||||||| || || Sbjct 65 ACCTACAACCATTAACTTCTGCATATCACGTAGGATACGTTGAGAGAAAATAGTCTCGTA 124 Query 102466 GCTTTCACTAGAAACTTCTACGGAAGAAGACTGATTCACTGCTTTCAGGTGTCTCTGACC 102525 | | |||||||||||||| | ||| ||||| ||||| ||||| | ||| Sbjct 125 GTTCTCACTAGAAACTTCGATACTTGAACTTGCGTTCACAGCTTTAAGGTGAGCTTCACC 184 Query 102526 ATGCTCGGTCTCGAATACGCCTTTTTC 102552 || | ||| || || | |||||||| Sbjct 185 ATATTTGGTTTCAAACATTCCTTTTTC 211 >seq450559 Length=633 Score = 104 bits (114), Expect = 2e-17 Identities = 234/345 (68%), Gaps = 14/345 (4%) Strand=Plus/Plus Query 54501 ACTGAAAAAGAA-GTCTATGATGCTTGTCAGGGTCTAGAGTATGAGATCAATACGATGTT 54559 || |||||||| ||| |||| || | ||| || || ||||| | ||||| || Sbjct 296 ACCGAAAAAGAGTGTC-ATGACGCATTCCAGTCACTTGAATATGAAGTGAATACCTTGCA 354 Query 54560 CAACTCTAATGGTCAGAGTCCATTTATTACTTTTGGTTTTGGTCTAGGAACTTCTTGGGA 54619 | | ||||||| || | || ||| |||| |||||||||||| |||| || ||||| Sbjct 355 TACCGCTAATGGCCAAACACCGTTTGTTACCTTTGGTTTTGGTTTAGGCGTGTCGTGGGA 414 Query 54620 AGCACGTCTAATACAGAAAGCAATACTGAAAGTACGTATGGATGGCTTAGGCATCAAT-- 54677 | ||| |||| ||| || | || | | ||||||||||| || ||||| | ||| Sbjct 415 GTCGCGTTTAATTCAGCAATCGATGTTAACAGTACGTATGGCGGGTTTAGGTAAAAATCG 474 Query 54678 -AAACGTACAGCTATCTTTCCGAAACTGGTGTTTGTTCTGCGTGATGGCGTAAAT-ATGA 54735 ||| ||||| ||||||| ||| ||||||||| | |||||||| ||| || | Sbjct 475 CAAA---ACAGCAGTCTTTCCAAAATTGGTGTTTGCCATTAAAGATGGCGTGAATCATAA 531 Query 54736 AGC--CTGGAGATGTTAATTATGACATCAAGAAGTTAGCTATGAAATGTACTGCTGAACG 54793 ||| || |||| ||||||||| || || ||| | || | | || | | || Sbjct 532 AGCGACT---GATGCTAATTATGATATTAAAAAGATGGCCTTAACGTGCTCAACCATGCG 588 Query 54794 TATGTATCCAGACTATATCAGCTATGATAAGGTTGTGGAAGTTAC 54838 ||||| ||||| | | | |||||| |||| ||| |||| || Sbjct 589 CATGTACCCAGATATTCTTAATTATGATCAGGTAGTGAAAGTCAC 633 >seq351952 Length=416 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 27669 GTAAATGTACGACTAATAACGTCGTTCTGCTGTTCACGCGTCAGTGCGTTAAAACGCACA 27728 ||||| ||||| | || || || | || ||||| || | | |||||| || || Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTACT 93 Query 27729 GCGTACCCTGAAACACGGATAGTTAATTGAGGGTATTTTTCAGGATGTTTCTGTGCATCC 27788 ||||| || || ||||| || |||||||| || || || || |||| || | ||||||| Sbjct 94 GCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATCC 153 Query 27789 AAAAGCTGATCACGACTTAACACATTGACATTTAGGTGTTGACCACCTTCAAT 27841 || | | ||||| | | ||||| || |||| |||||||||||||||||| Sbjct 154 AATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCAAT 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 386980784417042