Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_005859.1
Length=121750
Score E
Sequences producing significant alignments: (Bits) Value
seq426744 208 6e-49
seq507483 181 8e-41
seq506238 138 9e-28
seq435060 122 7e-23
seq466100 104 2e-17
seq450559 104 2e-17
seq351952 96.9 3e-15
>seq426744
Length=341
Score = 208 bits (230), Expect = 6e-49
Identities = 239/315 (76%), Gaps = 10/315 (3%)
Strand=Plus/Plus
Query 101607 ATTAAGACGCAGCGTAAGTACCAGATACAACGCCATT---TGCAAAGTAACGTTGCAGGT 101663
|||| | || ||||| ||||||| || | || || ||||| |||||| ||||
Sbjct 29 ATTACGCTGCTGCGTATGTACCAGTAACGATACCTTTACCTGCAATCATACGTTGTAGGT 88
Query 101664 TAACACGCTGAGTAACGTAGTACGCATCACGCTGTTTACCAGCTTGGCGCTCACGTTCAA 101723
||| ||| ||||| |||||||| |||||||| || ||||||||||| ||||||||||| |
Sbjct 89 TAAGACGTTGAGTTACGTAGTATGCATCACGTTGCTTACCAGCTTGACGCTCACGTTCTA 148
Query 101724 CAGTAACAGCGCGCTGACGTGGCATTACGAAGTTATCTTTATAAACAATAACTGCGAACT 101783
| |||| || || ||||| || | |||||||| || ||||| ||| ||| |
Sbjct 149 CTGTAATAGTACGTTGACGAGGAACAACGAAGTTCTCACGGTAAACGATAGTACAGAATT 208
Query 101784 CTG--CTGAGTTAGCTTTAGCTGGGAAATACTCGGAAACTACAACCGGCAGACCATAAAT 101841
||| |||| ||||||||||||||| || | ||||||| ||| | ||||| || ||
Sbjct 209 CTGAACTGA--CAGCTTTAGCTGGGAAGTAGTTAGAAACTAGAACTGCTAGACCGTAGAT 266
Query 101842 ACGACCAACCTGACCTTGCAG-TTTAAC-AG-AATCGTTACCAACCTGGGCAACATCCTG 101898
||||||||| || ||||| || |||||| || ||| |||||| ||| |||||||||
Sbjct 267 ACGACCAACTTGTCCTTGAAGTTTTAACGAGTTATCCGCACCAACTTGGTTAACATCCTG 326
Query 101899 CCATTCTTCATCTTC 101913
|||||||||||||||
Sbjct 327 CCATTCTTCATCTTC 341
>seq507483
Length=1083
Score = 181 bits (200), Expect = 8e-41
Identities = 565/859 (66%), Gaps = 33/859 (4%)
Strand=Plus/Plus
Query 72368 TAAACTGACGGATACTGGAGCAGATTCTACGGATGCAGAAGCTCTAAATGAACTGGCTAC 72427
|||| | || | |||||| ||| ||||| |||||||||| ||| | |||| |
Sbjct 227 TAAATTTACAGGTACTGGTGCAATCTCTACTGATGCAGAAGTACTAGAAAAACTAGG--- 283
Query 72428 GCAGCATCCAATT-GCTAA--AACT--CTGCTAGAGATTCGTAAGCTGACTAAGCTGATC 72482
|| | || || |||| || | || || |||||||| ||| || || | |
Sbjct 284 --AGAAACCCATGAGCTACCCAAGTTACTACTGGAGATTCGCAAGGCAACAAAAGTACTT 341
Query 72483 TCTACTTATGTTGAGAAGATTCTACTGAGTATTGATGCAGATGGTTGCATT--CGTACTG 72540
||||||||| ||||| || | ||||| ||||||| |||| ||||| |
Sbjct 342 AATACTTATGTAATTAAGATGTTAGACAACATTGACCGAGATGGT--CATTTACGTACAG 399
Query 72541 GTTTCCATGAACATATGACTACTTCTGGTCGTCTGAGTTCTTCTGGTAAACTGAACCTGC 72600
| || |||| | ||| ||||| |||||||| ||||| || || ||||| ||| | |
Sbjct 400 GGTTTAGCCAACACACGACCACTTCGGGTCGTCTAAGTTCATCAGGCAAACTTAACTTAC 459
Query 72601 AACAGTTACCCCGTGATGAATCTATTATCAAGGGTTGTGTAGTAGCTCCTCCTGGGTATC 72660
| || | || |||||||| |||| | ||||| ||| | ||||||||| | || |||
Sbjct 460 AGCAACTTCCTCGTGATGATGCTATGGTTAAGGGATGTATTGTAGCTCCTGCGGGCTATA 519
Query 72661 GTGTAATCGCGTGGGACTTAACAACTGCGGAAGTTTATTATGCTGCTGTTCTATCTGGTG 72720
| ||| | || ||| | |||||||||| | | || || | || ||| |
Sbjct 520 GAGTAGTAGCCGTGGATATGGAAACTGCGGAAATGTGGGTAGCAGCAGCACTTAGTGGGG 579
Query 72721 ATAGAA-ATATGCAACAGGTATTT-ATCAACATGAGAAATGAACCCGATAAATACCCAGA 72778
||| || | | || | || ||| | | | ||| | | | | || | ||
Sbjct 580 ATAAAAGACCTACAGAAAGTGTTTTAACGATATGGCTGACAAGTCTATTGTATCTGCCGA 639
Query 72779 CTTCCACTCCAACATCGCACACATGGTGTTTAAGCTGCAATGCGAACCCCGTGATGTTAA 72838
||||||| | || |||||||||||||| |||| | || | | | ||| | |
Sbjct 640 CTTCCACAGCTCTATTGCACACATGGTGTTCAAGCCAAACTGTCTAGCGCATGAATT--A 697
Query 72839 AAAGCT--GTTCCCAGCTCTGCGTCAGGCTGCTAAAGCAATCACCTTCGGTATTCTGTAT 72896
|||||| |||||| || | ||||||||| ||||||| || | ||||||||||| |
Sbjct 698 AAAGCTATGTTCCCTGCATTACGTCAGGCTTCTAAAGCTATTTCATTCGGTATTCTATTC 757
Query 72897 GGTTCTGGCCCAGCTAAAGTAGCGCATTCTGTTAACGAAGCATTACTAGAACAAGCAGCC 72956
||| ||| |||||||| ||||| | ||| |||| || | || | || ||| |
Sbjct 758 GGTAGTGGACCAGCTAAGGTAGCAGAATCTATTAATGAGTCGCTATTTGAGCAACATGTA 817
Query 72957 AAGACGGGCGAACCGTTTGTTGAATGTACTGTTGCAGAT---GCTAAAGAGTACATTGAG 73013
|||||||| || | | || || || | ||| |||||||| ||||||||
Sbjct 818 AAGACGGGTTGCCCTTACG---AACCTATTGATAAAGAAACAGCTAAAGATTACATTGAT 874
Query 73014 ACTTACTTCGGTCAGTTCCCACAGCTTAAGCGTTGGATTGATAAGTGCCACGATCAGATC 73073
|||||| ||| ||||| | || || ||||||||||| || ||| || |||||
Sbjct 875 GTTTACTTTAGTCGTTTCCCTGACCTGAAACGTTGGATTGACGCGTCCCATGAGCAGATT 934
Query 73074 AAGAATCATGGATTTATCTATAGTCACTTTGGTCGTAAACGTCGTCTGCATAATATCCAT 73133
| ||||| ||||| ||||| ||||| || ||||||||| | || | ||||||||
Sbjct 935 CTACAGCATGGGTTTATTTATAGCCACTTCGGACGTAAACGTAGACTACGTAATATCCGC 994
Query 73134 TC--CGAAGACCGTG-GTGTTCAGGGTGAAGAAATT-CGTTCTGGATTTAATGCAATCAT 73189
|| || | | | |||| |||||||| || ||||| || || || || |||||
Sbjct 995 TCAGCGTCTAGAGAGACTGTT---GGTGAAGAGCTTACGTTCAGGCTTCAACGCTATCAT 1051
Query 73190 TCAGTCTGCTTCTTCTGAT 73208
||| || || ||||||
Sbjct 1052 TCAAGGGGCATCATCTGAT 1070
>seq506238
Length=275
Score = 138 bits (152), Expect = 9e-28
Identities = 135/172 (78%), Gaps = 4/172 (2%)
Strand=Plus/Plus
Query 27669 GTAAATGTACGACTAATAACGTCGTTCTGCTGTTCACGCGTCAGTGCGTTAAAACGCACA 27728
||||||||||| | | ||||| | ||| ||||| | || | || ||||||||||||
Sbjct 52 GTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATGAGTTAAAACGCACT 111
Query 27729 GCGTACCCTGAAACACGGATAGTTAATTGAGGGTATTTTTCAGGATGTTTCTGTGCATC- 27787
||||| ||||| ||||| ||||||||||| || ||||||||||| ||||| |||||
Sbjct 112 GCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGTGTTTAACAGCATCT 171
Query 27788 -CAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGTTGACCACCTTC 27838
| || | | ||||||| ||||||||| || |||| ||||||||||||||
Sbjct 172 TCCAATGTT--TCACGACGTAACACATTCACGTTTAAATGTTGACCACCTTC 221
>seq435060
Length=507
Score = 122 bits (134), Expect = 7e-23
Identities = 307/466 (66%), Gaps = 17/466 (4%)
Strand=Plus/Plus
Query 72768 AAATACCCAGACTTCCACTCCAACATCGCACACATGGTGTTTAAGCTGCAATGCGAACCC 72827
|| || || ||||||||| ||||| || |||||||||||||| || | || | ||
Sbjct 44 AAGTATCCCGACTTCCACAGTAACATAGCTCACATGGTGTTTAACCTACCTTGTAAGCCT 103
Query 72828 CGTGATGTTAAAAAGCTGTTCCCAGCTCTGCGTCAGGCTGCTAAAGCAATCACCTTCGGT 72887
|| ||||| || || |||||||| || | |||||||| || || || || || |||
Sbjct 104 GAGGAAGTTAAGAAACTATTCCCAGCCCTAAGGCAGGCTGCGAAGGCGATAACATTTGGT 163
Query 72888 ATTCTGTATGGTTCTGGCCCAGCTAAAGTAGCGCATTCTGTTAACGAAGCATTACTAGAA 72947
||||| | ||||| || |||| ||||| | |||||| ||| ||||||
Sbjct 164 ATTCTATTCGGTTCAGGAGCAGCATCTGTAGCAGAGCAAGTTAACTTAGCTAAGCTAGAA 223
Query 72948 CAAGCAGCCAAGACGGGCGAACCGTTTGTTGAATGTACTGTTGCAGATGCTAAAGAGTAC 73007
|| | ||| | | ||| |||||| | | || || |||
Sbjct 224 TTAG------------GTGAAGCA---GCTGATTGTACTAAAGAAATCGCCGCAGGTTAC 268
Query 73008 ATTGAGACTTACTTCGGTCAGTTCCCACAGCTTAA-GCGTTGGATTGATAAGTGCCACGA 73066
|| || |||||| | |||||| ||||| |||| |||||||| || || ||
Sbjct 269 ATCGAAGTGTACTTCAAGCGGTTCCCTAGACTTAAAGCGT-GGATTGATTCTTGTCATGA 327
Query 73067 TCAGATCAAGAATCATGGATTTATCTATAGTCACTTTGGTCGTAAACGTCGTCTGCATAA 73126
| | ||| | | |||||||| || | ||||| || ||||| ||| | | || ||
Sbjct 328 TGAAATCCGTCAGAAAGGATTTATATACAACCACTTCGGCCGTAAGCGTAGATTACACAA 387
Query 73127 TATCCATTCCGAAGACCGTGGTGTTCAGGGTGAAGAAATTCGTTCTGGATTTAATGCAAT 73186
||| ||| || | || ||| |||| |||||| ||||| ||||||||||| ||
Sbjct 388 CATCTCTTCTAGCGATAGAGGCGTTGTAGGTGGAGAAATCCGTTCAGGATTTAATGCTAT 447
Query 73187 CATTCAGTCTGCTTCTTCTGATAGTCTCCTTTTAGGTGCTGTAGAT 73232
||| |||||||| || |||||| | || |||| |||||||||
Sbjct 448 CATACAGTCTGCGTCATCTGATCACTTACTGCTAGGAGCTGTAGAT 493
>seq466100
Length=556
Score = 104 bits (114), Expect = 2e-17
Identities = 147/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 102346 ATCCGGTTCAACCAGCATAGTAAGAATCTTACTGGACATCGGCAGTTCTTCGAACAGTGC 102405
||| || |||| || |||||||||||||||||| | ||| || || |||||||| |
Sbjct 5 ATCTGGCTCAATCATCATAGTAAGAATCTTACTAGTCATTGGAAGCTCTTCGAATAAGTT 64
Query 102406 GCCAACTACCAGCTCTTTCTGCAGGTCGCGGATAATACGCTGAGAGAAAATAGTTTCATA 102465
|| || |||| ||||||| || || | ||||| |||||||||||||| || ||
Sbjct 65 ACCTACAACCATTAACTTCTGCATATCACGTAGGATACGTTGAGAGAAAATAGTCTCGTA 124
Query 102466 GCTTTCACTAGAAACTTCTACGGAAGAAGACTGATTCACTGCTTTCAGGTGTCTCTGACC 102525
| | |||||||||||||| | ||| ||||| ||||| ||||| | |||
Sbjct 125 GTTCTCACTAGAAACTTCGATACTTGAACTTGCGTTCACAGCTTTAAGGTGAGCTTCACC 184
Query 102526 ATGCTCGGTCTCGAATACGCCTTTTTC 102552
|| | ||| || || | ||||||||
Sbjct 185 ATATTTGGTTTCAAACATTCCTTTTTC 211
>seq450559
Length=633
Score = 104 bits (114), Expect = 2e-17
Identities = 234/345 (68%), Gaps = 14/345 (4%)
Strand=Plus/Plus
Query 54501 ACTGAAAAAGAA-GTCTATGATGCTTGTCAGGGTCTAGAGTATGAGATCAATACGATGTT 54559
|| |||||||| ||| |||| || | ||| || || ||||| | ||||| ||
Sbjct 296 ACCGAAAAAGAGTGTC-ATGACGCATTCCAGTCACTTGAATATGAAGTGAATACCTTGCA 354
Query 54560 CAACTCTAATGGTCAGAGTCCATTTATTACTTTTGGTTTTGGTCTAGGAACTTCTTGGGA 54619
| | ||||||| || | || ||| |||| |||||||||||| |||| || |||||
Sbjct 355 TACCGCTAATGGCCAAACACCGTTTGTTACCTTTGGTTTTGGTTTAGGCGTGTCGTGGGA 414
Query 54620 AGCACGTCTAATACAGAAAGCAATACTGAAAGTACGTATGGATGGCTTAGGCATCAAT-- 54677
| ||| |||| ||| || | || | | ||||||||||| || ||||| | |||
Sbjct 415 GTCGCGTTTAATTCAGCAATCGATGTTAACAGTACGTATGGCGGGTTTAGGTAAAAATCG 474
Query 54678 -AAACGTACAGCTATCTTTCCGAAACTGGTGTTTGTTCTGCGTGATGGCGTAAAT-ATGA 54735
||| ||||| ||||||| ||| ||||||||| | |||||||| ||| || |
Sbjct 475 CAAA---ACAGCAGTCTTTCCAAAATTGGTGTTTGCCATTAAAGATGGCGTGAATCATAA 531
Query 54736 AGC--CTGGAGATGTTAATTATGACATCAAGAAGTTAGCTATGAAATGTACTGCTGAACG 54793
||| || |||| ||||||||| || || ||| | || | | || | | ||
Sbjct 532 AGCGACT---GATGCTAATTATGATATTAAAAAGATGGCCTTAACGTGCTCAACCATGCG 588
Query 54794 TATGTATCCAGACTATATCAGCTATGATAAGGTTGTGGAAGTTAC 54838
||||| ||||| | | | |||||| |||| ||| |||| ||
Sbjct 589 CATGTACCCAGATATTCTTAATTATGATCAGGTAGTGAAAGTCAC 633
>seq351952
Length=416
Score = 96.9 bits (106), Expect = 3e-15
Identities = 125/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 27669 GTAAATGTACGACTAATAACGTCGTTCTGCTGTTCACGCGTCAGTGCGTTAAAACGCACA 27728
||||| ||||| | || || || | || ||||| || | | |||||| || ||
Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTACT 93
Query 27729 GCGTACCCTGAAACACGGATAGTTAATTGAGGGTATTTTTCAGGATGTTTCTGTGCATCC 27788
||||| || || ||||| || |||||||| || || || || |||| || | |||||||
Sbjct 94 GCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATCC 153
Query 27789 AAAAGCTGATCACGACTTAACACATTGACATTTAGGTGTTGACCACCTTCAAT 27841
|| | | ||||| | | ||||| || |||| ||||||||||||||||||
Sbjct 154 AATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCAAT 206
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 386980784417042
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