Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq300823 140 5e-28 seq120923 136 6e-27 seq141700 109 8e-19 seq436221 95.1 2e-14 seq220228 95.1 2e-14 >seq300823 Length=615 Score = 140 bits (154), Expect = 5e-28 Identities = 181/250 (72%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 8691 ACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCC 8750 ||||||||| ||| |||| ||| || || | | ||| || | |||||||| Sbjct 293 ACGGACACCACTTGGTGTTGGCACACACCAGTTTCCTCAAAGTGGCCGTGTTGACGATGT 234 Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 | || ||| || || ||||||||||| || |||||||| | |||||||||||| || Sbjct 233 CGAAGCCCTTTTCCCCCCCGAAGGTGCTCGGCTTCCAGTACACAGGGGAGCAGATGGGGT 174 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | ||| |||||||| | ||| || |||||||||| ||| | |||||||| || || | Sbjct 173 TTCCCAGCAGGCCTTTCAAGGAGAAGGGAGCCCCCATCTCCACCATGCTCTCCCCAAATA 114 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 | || ||||| | || |||| || || |||| ||| ||||||| ||| ||||||| Sbjct 113 TACTGTCAGGACGAGCTTTCTCCAGCAGGACTCCGACGTAAAACTCCAGAGCATCGATGT 54 Query 8931 CTCCGTAAAG 8940 | ||||| || Sbjct 53 CCCCGTAGAG 44 >seq120923 Length=5298 Score = 136 bits (150), Expect = 6e-27 Identities = 185/256 (72%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || | |||||| || |||||||| |||||| ||||| ||| || ||||| Sbjct 2074 TCACCAATCAGGATGAGCCGTGTGGTCTGGAACAGTCTCTCGTCGTCCCAGTCGGGATGC 2015 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 | ||||| || |||||||| | |||||| |||| |||||||| || ||||||||| Sbjct 2014 ACCTCCTTCAGCACGTCGCACACCCGGTTGTGCTCCCGCAGCCAGATGGTGGCGTACATC 1955 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 || ||||| || |||||||| |||||||| || || || || | || | ||| || Sbjct 1954 ATCAGACCCGGGACCAGGCCGAAAGCCTCGTGGCCCACGGCGAAGCGGTGAGATTCAGGG 1895 Query 9790 ACTTCGGGAGGATAGATCATGT--GCACCTGGACATCTTTGACCGAGGGGGGATACATTT 9847 || | ||||| |||||||| | || || || || || |||| ||||| |||| | Sbjct 1894 ACGTGAGGAGGGTAGATCATATCAGCGCC--CACTTCCTTTACCGTCGGGGGGTACACCT 1837 Query 9848 CACCGTCAATAATCTG 9863 | |||| || ||||| Sbjct 1836 CTCCGTTCATGATCTG 1821 Score = 131 bits (144), Expect = 2e-25 Identities = 170/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 |||| ||| | || |||||| ||| |||||||||||||| |||||||| |||| ||| Sbjct 4144 TTGATGATGTCGAATCCCACGCTTCCTCCGAAGGTGCTGGGCTTCCAGTACTCCGGTGAG 4085 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 |||||| |||| ||| | || |||||||| | || ||||||| ||| | ||| || Sbjct 4084 CAGATGGCGTTTCCCAACAAACCCTTGAGGGAGTAAGGGGCCCCCATCTCCACCATGGTC 4025 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || |||||||||||||| || | |||||| || | | | || | ||| | |||||| Sbjct 4024 TCGCCGAAGATGGCGTTAGGCCTGGGCTTCTCTATGAGCAGGCCCGGGTAGAGCTCCACG 3965 Query 8921 GCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || || | || |||||| | | || | ||||| ||||| | ||||||| Sbjct 3964 GCGTCCACGTGTCCGTACATCTCTTCCAGCACCGCAGCCATTTCGGTCTCTCCTG 3910 Score = 87.8 bits (96), Expect = 3e-12 Identities = 177/263 (67%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| || ||||| | || || ||||| || || || || ||| | |||||||| | Sbjct 3073 CTTACCCGTCCAGCGACCTGCTTGGTGAATGACTCCACCAGGTGGTTGATGCCGTGCTCC 3014 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTTTGTTTTATCAATCTCA 9441 | | | || ||||| | || || | |||||| || | |||| || || | Sbjct 3013 GTCACCACAGACGTGTTGAAGACAAACTGTTTGTAGTTGTAATCGGTTTCCTCGATGTGG 2954 Query 9442 AACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9501 || | || ||||| || | |||||||| |||| |||| |||||||| | || || Sbjct 2953 AAGGTGTCGGGCATCAGCGGGTGCCAGTGGTACAGGGTGTTGAACTCGGAGGAGATGCGG 2894 Query 9502 TTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTGG 9561 || |||||||||||| |||||||| ||||| | ||| | || |||| | Sbjct 2893 TTCTGGTACTGGAACTGCTGGTTGAAGAGCAGCTCGGGGTCGAACTTGAGCTTGAAGTTG 2834 Query 9562 TAGCCGCTGAGCTGCTGAACATA 9584 |||||||| || ||||| || || Sbjct 2833 TAGCCGCTCAGATGCTGCACGTA 2811 >seq141700 Length=1035 Score = 109 bits (120), Expect = 8e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| |||||||| | |||||||| || || || ||||| ||| |||||| Sbjct 294 TCACCGATGATGATGAGCCTGGTGGTCTGGAAGAGCTGCTCGTCGTCCCAGGTGGGATGT 235 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || ||||| || || |||||||||||||| ||||| ||||| | || | |||||| Sbjct 234 TCGGCCTTCAGGACGTCACACACTCTGTTGTGCTCCCTCAGCCACACGGTGGAGTACATG 175 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGC 9777 ||||||| |||| |||||| ||| ||||||| ||||||||| Sbjct 174 GTGAGACCCGGCAGGCTGCCAAACAGCTCCTGACCGATCGCCAGACGC 127 >seq436221 Length=551 Score = 95.1 bits (104), Expect = 2e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| || ||| || |||||||||||||| ||||||||| || || || | | || Sbjct 507 CAAAGCCAACGGTGCCTCCGAAGGTGCTGGGCTTCCAGTAATTTGGAGAACATAAGGGGT 448 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | ||| || || |||||||| || || || |||| ||| | |||||||| || || | Sbjct 447 TTCCCAGAAGCCCCTTGAGGGAGAAGGGGGCACCCATCTCCACCATGCTCTCTCCAAATA 388 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 ||||||| | || | | |||| || || |||| || || || | ||| ||||| | Sbjct 387 TGGCGTTCTGTCGTGTTCTCTCCAACATCAAGCCGGGATAAAATTCAAGAGCATCGATAT 328 Query 8931 CTCCGTA 8937 | ||||| Sbjct 327 CCCCGTA 321 >seq220228 Length=510 Score = 95.1 bits (104), Expect = 2e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| || ||| || |||||||||||||| ||||||||| || || || | | || Sbjct 466 CAAAGCCGACGCTGCCTCCGAAGGTGCTGGGCTTCCAGTAATTTGGAGAACATAAGGGGT 407 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | ||| || || |||||||| || || || |||| ||| | |||||||| || || | Sbjct 406 TTCCCAGAAGCCCCTTGAGGGAGAAGGGGGCACCCATCTCCACCATGCTCTCTCCAAATA 347 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 ||||||| | || | | |||| || || |||| || || || | ||| ||||| | Sbjct 346 TGGCGTTCTGTCGTGTTCTCTCCAACATCAAGCCGGGATAAAATTCAAGAGCATCGATAT 287 Query 8931 CTCCGTA 8937 | ||||| Sbjct 286 CCCCGTA 280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 703870660006880