Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq59939 114 1e-20 seq152719 107 2e-18 >seq59939 Length=800 Score = 114 bits (126), Expect = 1e-20 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| |||||| ||||||| | || ||||||||||| ||||| ||||| || Sbjct 10 ATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTT 69 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || |||||||| ||| |||||| | || || || | ||||| Sbjct 70 GTCCTGGATCTTGGCCTTGACATTTTCGATTGTGTCACTAGGCTCAACCTCGAGGGTGAT 129 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACA 95014 ||| || || || || || |||||||||||||||||| || || Sbjct 130 GGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTTTGCA 172 >seq152719 Length=2073 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||||||| |||| ||| | || | || ||||| || || | ||||||||| | Sbjct 500 CCTCCTCTCAAGCGCAGCACAAGATGGATGGTGGATTCTTTCTGGATGTTATAATCTGAC 559 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 || ||| ||| |||||||| || ||| ||||||| | || |||||||| ||||| Sbjct 560 ATGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGG 619 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || || || | || || || || || | | ||||| | | || || Sbjct 620 ATGCCCTCCTTATCCTGGATCTTAGCTTTTACATTCTCAATGGTGTCGCTGGGTTCAACC 679 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||| || || ||||| || || ||||||||||||||||| Sbjct 680 TCCAGAGTGATAGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 726 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||||| || | ||| | || | || || || || || | ||| || ||| Sbjct 44 CCTCCTCTCAGGCGGAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 103 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | || |||||||| || ||| ||||||| | || |||||||| ||||| Sbjct 104 AGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGG 163 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || || || | || || || ||||| | | ||||| | | || || Sbjct 164 ATGCCCTCCTTATCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGTTCAACC 223 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||||| || ||||| || || ||||||||||||||||| Sbjct 224 TCCAGAGTGATGGACTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 270 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAG-ATTCCTTTTGCACGTTATAATCGCT 94839 |||||||||| ||||| |||| || || | || | || || || | ||| || ||| Sbjct 272 CCTCCTCTCAGCCGCAAGACCAGATG-AATGCAGGACTCTTTCTGGATGTTGTAGTCGGA 330 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 | |||| | || |||||||| || ||| ||||||| | || ||||| |||||||| Sbjct 331 GAGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGAGG 390 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 || ||||| || || | || || || ||||| | | ||||| | | || || Sbjct 391 GATGCCTTCCTTATCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCGTTGGGTTCAAC 450 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | ||||| || || || || || || |||||||||||||| || Sbjct 451 CACCAGAGTGATAGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGAAT 498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445346475972720