Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq56418 183 5e-42 seq26301 147 3e-31 seq133193 111 2e-20 >seq56418 Length=805 Score = 183 bits (202), Expect = 5e-42 Identities = 203/271 (75%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| | ||| || ||||||||||| ||||| |||||||| || || Sbjct 374 CGCAAAGCGTCACCGCAAAGTTCTCCGTGATAACATCCAGGGAATTACCAAGCCCGCCAT 315 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| ||||| ||||| |||||| |||| || || |||| || |||| Sbjct 314 CCGCCGCCTGGCTCGCCGTGGCGGAGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 255 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || |||||| | ||||| ||| ||| |||| |||||| || ||| ||||| Sbjct 254 CCGCGGCGTGTTGAAGGTTTTCCTGGAGAACGTGATCCGCGATGCTGTCACCTACACCGA 195 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| |||||||| | || ||||| |||| | || || Sbjct 194 GCACGCCAAGAGGAAGACCGTGACCGCCATGGATGTGGTGTATGCTCTGAAGAGACAGGG 135 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | || || || ||| | ||| || Sbjct 134 CCGCACTCTGTACGGCTTCGGAGGATAAACT 104 >seq26301 Length=1306 Score = 147 bits (162), Expect = 3e-31 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| |||||||||||||| || ||||| || ||||| || || || Sbjct 974 CTCCGTGATAACATCCAGGGAATCACCAAGCCCGCCATCCGCCGGCTGGCCCGCCGCGGC 1033 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||||| |||| || || |||| || |||| || | || ||||| | ||| Sbjct 1034 GGAGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACCCGCGGGGTGCTGAAGGTGTTC 1093 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| ||| || || ||| ||||||||||| || || ||||| || Sbjct 1094 CTGGAGAACGTGATCCGTGACGCCGTCACCTACACCGAGCACGCGAAGCGGAAGACGGTG 1153 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| | || || || |||| || || ||||| Sbjct 1154 ACCGCCATGGACGTGGTGTACGCGCTGAAGCGACAGGGCCG 1194 >seq133193 Length=220 Score = 111 bits (122), Expect = 2e-20 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| | ||| || ||||||||||| ||||| |||||||| || || Sbjct 101 CGCAAAGCGTCACCGCAAAGTTCTCCGTGATAACATCCAGGGAATTACCAAGCCCGCCAT 160 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||| || |||||||| ||||| ||||| |||||| |||| || || |||| || |||| Sbjct 161 CCGCCGCCTGGCTCGCCGTGGCGGAGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGA 219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78594729842886