Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq56418 183 5e-42
seq26301 147 3e-31
seq133193 111 2e-20
>seq56418
Length=805
Score = 183 bits (202), Expect = 5e-42
Identities = 203/271 (75%), Gaps = 0/271 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| |||||||| |||| | ||| || ||||||||||| ||||| |||||||| || ||
Sbjct 374 CGCAAAGCGTCACCGCAAAGTTCTCCGTGATAACATCCAGGGAATTACCAAGCCCGCCAT 315
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||| ||||| ||||| |||||| |||| || || |||| || ||||
Sbjct 314 CCGCCGCCTGGCTCGCCGTGGCGGAGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 255
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || |||||| | ||||| ||| ||| |||| |||||| || ||| |||||
Sbjct 254 CCGCGGCGTGTTGAAGGTTTTCCTGGAGAACGTGATCCGCGATGCTGTCACCTACACCGA 195
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| || ||| |||||||| | || ||||| |||| | || ||
Sbjct 194 GCACGCCAAGAGGAAGACCGTGACCGCCATGGATGTGGTGTATGCTCTGAAGAGACAGGG 135
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702
||| | | || || || ||| | ||| ||
Sbjct 134 CCGCACTCTGTACGGCTTCGGAGGATAAACT 104
>seq26301
Length=1306
Score = 147 bits (162), Expect = 3e-31
Identities = 165/221 (75%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || ||||||||||| |||||||||||||| || ||||| || ||||| || || ||
Sbjct 974 CTCCGTGATAACATCCAGGGAATCACCAAGCCCGCCATCCGCCGGCTGGCCCGCCGCGGC 1033
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
||||| ||||| |||| || || |||| || |||| || | || ||||| | |||
Sbjct 1034 GGAGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACCCGCGGGGTGCTGAAGGTGTTC 1093
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
|| ||| ||| |||| ||| || || ||| ||||||||||| || || ||||| ||
Sbjct 1094 CTGGAGAACGTGATCCGTGACGCCGTCACCTACACCGAGCACGCGAAGCGGAAGACGGTG 1153
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
||| ||||||| | || || || |||| || || |||||
Sbjct 1154 ACCGCCATGGACGTGGTGTACGCGCTGAAGCGACAGGGCCG 1194
>seq133193
Length=220
Score = 111 bits (122), Expect = 2e-20
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| |||||||| |||| | ||| || ||||||||||| ||||| |||||||| || ||
Sbjct 101 CGCAAAGCGTCACCGCAAAGTTCTCCGTGATAACATCCAGGGAATTACCAAGCCCGCCAT 160
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
||| || |||||||| ||||| ||||| |||||| |||| || || |||| || ||||
Sbjct 161 CCGCCGCCTGGCTCGCCGTGGCGGAGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGA 219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 78594729842886
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |