Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_006820.1
Length=196280
Score E
Sequences producing significant alignments: (Bits) Value
seq509954 163 4e-35
seq449735 87.8 2e-12
seq326422 87.8 2e-12
seq258675 86.0 8e-12
>seq509954
Length=433
Score = 163 bits (180), Expect = 4e-35
Identities = 214/293 (73%), Gaps = 4/293 (1%)
Strand=Plus/Plus
Query 80254 CATGGTCTTGATGCTGAGCAAGAGCTTGCTAACATTCTTTCGAGTGAAGTTCTTGCTGAG 80313
||||| | || || || |||| ||||| || |||||||| | |||| ||||||| ||
Sbjct 24 CATGGCTTGGACGCAGAAGAAGAACTTGCAAATATTCTTTCAACTGAAATTCTTGCAGAA 83
Query 80314 ATCAACCGCGAAGTTGTACGTAGAGTGTACACAGTTGCCAAGAAAGGTGCTCAGAACAAC 80373
|| ||||| || | | |||| || || || ||| || ||||| || |||
Sbjct 84 ATTAACCGTGAGCTAATTCGTACCGTATATGCAACTGCAAAACCTGGTGCACA-AACTG- 141
Query 80374 GTT--GCTAACGCTGGCATCTTCGACCTTGATGTTGATTCAAATGGTCGTTGGTCTGTTG 80431
||| || |||||||| |||||||| | || || ||| |||||||||| ||||| || |
Sbjct 142 GTTCAGCAAACGCTGGTATCTTCGATTTAGACGTAGATGCAAATGGTCGCTGGTCAGTAG 201
Query 80432 AAAAGTTCAAGGGTCTTCTATTCCAAGTTGAGCGTGATGCTAACGCAATCGCACAAGAGA 80491
|||| ||||| || ||| | |||||| |||| |||||||||||| |||||| |||| |
Sbjct 202 AAAAATTCAAAGGACTTATGTTCCAAATTGAACGTGATGCTAACCAAATCGCTAAAGAAA 261
Query 80492 CTCGTAGAGGCAAGGGTAACTTCCTAATCTGCTCTGCTGACGTTGCTTCAGCA 80544
| | | || || |||||||| | ||||| || ||||||| ||||| |||
Sbjct 262 CCAGACGTGGTAAAGGTAACTTTATTATCTGTTCATCTGACGTAGCTTCTGCA 314
>seq449735
Length=3187
Score = 87.8 bits (96), Expect = 2e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 114515 ATATTCTAGAAGGTATTCGTTTTTATGTATCATTTGCATGTTCATTTGCATTTGGTGAGA 114574
||||| |||||| |||||||||||||| ||||| || || ||||| |||| ||||
Sbjct 2370 ATATTTTAGAAGCGATTCGTTTTTATGTCAGCTTTGCCTGCTCGTTTGCGTTTGCTGAGC 2429
Query 114575 ATAAATTGATGGAAGGTAATGCGAAAATTATTTCTCTCATTGCAAGAGATGAA 114627
| |||||||||||||||| || ||||| || || ||||| | ||||||
Sbjct 2430 GTGAATTGATGGAAGGTAACGCTAAAATAATCAAGCTTATTGCCCGCGATGAA 2482
>seq326422
Length=2068
Score = 87.8 bits (96), Expect = 2e-12
Identities = 75/93 (81%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 118756 AACTATTCTGGGAGGATTTCCGAGTGGTTAAAGGAATCTGACTGTAAATCAGACGGCTCT 118815
|| ||| ||| || || ||||| || ||||| ||| ||||||||||| ||||||||
Sbjct 543 AATTATCGTGGAGGGGTTCCCGAGCGGCCAAAGGGATCAGACTGTAAATCTGACGGCTCA 484
Query 118816 GCCTTCGCAGGTTCGAATCCTGCTCCTCCCACC 118848
|||||||| ||||||||||| ||||| |||||
Sbjct 483 GCCTTCGCTGGTTCGAATCCAGCTCCCTCCACC 451
>seq258675
Length=1951
Score = 86.0 bits (94), Expect = 8e-12
Identities = 67/80 (84%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 164824 CGCGGGATGGAACAGTCTGGTAGTTCAGCGGTCTCATAAGCCGCAGGTCGTGGGTTCAAA 164883
||||||||||| ||||||||||| || ||| ||||||| ||| ||||||| ||||||||
Sbjct 143 CGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAA 202
Query 164884 TCCCACTCCCGCTCCCATTT 164903
||| ||||||| ||| ||
Sbjct 203 TCCGGCTCCCGCAACCAATT 222
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 164824 CGCGGGATGGAACAGTCTGGTAGTTCAGCGGTCTCATAAGCCGCAGGTCGTGGGTTCAAA 164883
||||||||||| ||||||||||| || ||| ||||||| ||| ||||||| ||||||||
Sbjct 393 CGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAA 452
Query 164884 TCCCACTCCCGC 164895
||| |||||||
Sbjct 453 TCCGGCTCCCGC 464
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 623843019500800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |