Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq509954 181 2e-40 seq156338 86.0 1e-11 >seq509954 Length=433 Score = 181 bits (200), Expect = 2e-40 Identities = 288/408 (71%), Gaps = 9/408 (2%) Strand=Plus/Plus Query 119923 TTGCTCAAGACCTCAAGGCAATCCACGGTTTGAATGCAGAAGCAGAACTTGCTAACATTC 119982 ||||||| || | || || | || || ||| | ||||||| ||||||||| || |||| Sbjct 1 TTGCTCAGGATATGAAAGCTGTACATGGCTTGGACGCAGAAGAAGAACTTGCAAATATTC 60 Query 119983 TTTCTACTGAGATCCTTGCGGAAATCAACAGAGAAGTTATCAGAAC--TATCTACAACGT 120040 |||| ||||| || ||||| ||||| ||| | || | || | || ||| | |||| Sbjct 61 TTTCAACTGAAATTCTTGCAGAAATTAACCGTGAGCTAATTCGTACCGTATATGCAACT- 119 Query 120041 AGCAGAGCCTGGTGCTCAAGCAAACGTT--GCTGCTGCTGGAACATTCGACCTTGACACC 120098 ||| | |||||||| ||| | ||| || ||||| | ||||| | ||| Sbjct 120 -GCAAAACCTGGTGCACAAACTG--GTTCAGCAAACGCTGGTATCTTCGATTTAGACGTA 176 Query 120099 GATTCAAACGGTAGATGGTCAGTTGAGAAGTTCAAAGGACTTATCTTCCAGATCGAGCGT 120158 ||| |||| ||| | |||||||| || || |||||||||||||| ||||| || || ||| Sbjct 177 GATGCAAATGGTCGCTGGTCAGTAGAAAAATTCAAAGGACTTATGTTCCAAATTGAACGT 236 Query 120159 GATGCCAACGCTATCGCACAAAGAACTCGTCGTGGAAAGGGTAACATGATCCTTTGTTCC 120218 ||||| ||| ||||| || ||| | ||||| || |||||| | || | ||||| Sbjct 237 GATGCTAACCAAATCGCTAAAGAAACCAGACGTGGTAAAGGTAACTTTATTATCTGTTCA 296 Query 120219 GCAGACGTTGCTTCTGCTCTAACAATGGCTGGTGTTCTCGATTACACTCCTGCACTTAAC 120278 | ||||| |||||||| | | ||||| | || |||| | | ||||| | Sbjct 297 TCTGACGTAGCTTCTGCATTGGCTGCTGCTGGAATCCTTGATTTCGCACCTGCTATCTCT 356 Query 120279 GCTAACCT-TAATGTAGATGATACAGGCAATACATTTGCTGGTATTCT 120325 || || || || ||||||||||| || ||||||||||||||| |||| Sbjct 357 GCAAATCTACAAAGTAGATGATACCGGTAATACATTTGCTGGTGTTCT 404 >seq156338 Length=1650 Score = 86.0 bits (94), Expect = 1e-11 Identities = 120/168 (71%), Gaps = 3/168 (2%) Strand=Plus/Minus Query 188374 ATGGTATATCTTAATGATGTTGAAGAAGGTGGTGAGACAGAATTTCTTTATCAACAGaaa 188433 ||| | || || |||||||||||||| || ||||| || || ||| ||||||||| Sbjct 855 ATGTTTTACCTGAATGATGTTGAAGAGGGCGGTGAAACGGAGTTTTATTATCAACAACGT 796 Query 188434 aaaaTAAAACCAAAGAAAGGCACTGTTGTTATTTGGCCAGGTGGGTTTACTCATATGCAT 188493 ||||||| || || ||||||||| | || ||| |||| || |||||||||| ||| Sbjct 795 AAAATAAGCCCTAAAAAAGGCACTATGGTGATTGCTCCAGCGGGTTTTACTCATAGCCAT 736 Query 188494 AGAGGTAATCCTCCAAT---GGATGATAAGTATATTGTTACTGGTTGG 188538 | || ||| || || | ||||| ||||||| ||| |||| Sbjct 735 CGTGGCAATGTGCCCATTAGTAACGATAAATATATTGCGACTTCTTGG 688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 802250551591120