Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq44246 407 2e-108
seq388653 118 1e-21
seq231358 111 2e-19
seq28532 105 8e-18
seq103378 96.9 4e-15
>seq44246
Length=4029
Score = 407 bits (450), Expect = 2e-108
Identities = 1160/1779 (65%), Gaps = 12/1779 (1%)
Strand=Plus/Minus
Query 62319 AGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTA 62378
|| ||||| || || || | || || ||||| |||| || | || ||||| || ||
Sbjct 1774 AGCAGATGGGGGTTGACGATCTGGAACTCTCCTGACAGGACCCGGCGGGTGTAGATGTTG 1715
Query 62379 CTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 62438
||||| || | || | ||||| || || |||| || || || || || || || |||
Sbjct 1714 CTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGC 1655
Query 62439 ATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGT 62498
|| || |||| || | || || || | |||| | ||| || || || || |
Sbjct 1654 ATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGC 1595
Query 62499 TCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGT 62556
| ||| | ||| || || | || | | | || || || || |
Sbjct 1594 TTCCAGTCCCACAGGTCGGTGGG--CGTCTTCTCCCACATGTCGTACTGGAGGATGCCCT 1537
Query 62557 TACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAAC 62616
| ||| || || ||| | || || ||||| || || || | || ||||| || |
Sbjct 1536 TGCTGACGGGGGAGCCT-CGTACGTGTCGTAGGGGCCCAGCTCGGCGGCCAGTTCGCAGC 1478
Query 62617 TCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTT 62676
| ||||| | || |||| || ||||| || ||||||| | || || || || |
Sbjct 1477 TGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCCT 1418
Query 62677 CCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAA 62736
| |||| ||||| || ||| | || || || ||||| || | || || || || |
Sbjct 1417 CGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCAGGCCCTGGACGCCGA 1358
Query 62737 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62796
||||||| || || || | ||| || || || || || || | || || | ||||
Sbjct 1357 TACCGATCGGCCTGTGGCGCTTGTTGGACTGATCGGCCTCGGGCACCGGGTAGAAGTTAA 1298
Query 62797 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62856
| ||||| || || || || || | || || |||||| |||| || |||||| |
Sbjct 1297 TCTCTATGATCTTGTTCAGGTTCTTCACGATCACTTTGGTCACAGACTCCAGTTTCTTGA 1238
Query 62857 AATCAAATCGCCCATCTA---TTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAA 62913
| ||||| || || | || ||||||| | || | || ||||||||||| |
Sbjct 1237 AGTCAAAAGTCCGCTCGGGGGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACACA 1178
Query 62914 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 62973
| || ||||||| || | |||| | || || ||||| || || || |||||||
Sbjct 1177 CAGCGACCTCATCGCCACTGGAGTATTCAACGATTTCCGTGCAGAGGTTGCTGCACTTGA 1118
Query 62974 TAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 63033
| ||||| | || || || || ||||| |||| || || || || || || ||| | |
Sbjct 1117 TGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACG 1058
Query 63034 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTA 63093
| || || | || |||| || || || || || | ||| || ||||||| | |
Sbjct 1057 GCGTGCCCGACTCCGTCTGGGACTCGATGATGGCGTGCCACACCTGCTGAGCCTTCACCA 998
Query 63094 TAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCC 63153
| ||| | | || | || ||| | || || | || ||||| || ||||
Sbjct 997 CACGCTTGACCCGGCCCTCCCGCTCATATTGGGTGTAGAGCTTCTCAAACTCCTCCCCCC 938
Query 63154 AAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCT 63213
| | ||||| || || | || |||||||||| ||||| || || ||
Sbjct 937 AGCACTCGTCCAGCCCGGGGCTCTCGCTGGGACACATCAGAGACCAGTCCTGGTTGCTCT 878
Query 63214 TCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTA 63272
||| | ||||| || || || || ||||| | ||| || || |||||||||| |||
Sbjct 877 CCACCCTCTTCATGAACAGGTCGGGGATCCACA-AGCCGTAGAAGAGATCTCTGGCTCTC 819
Query 63273 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 63332
|| ||||| || || || ||||| || || || ||||| | | | ||| | ||||||
Sbjct 818 TGCTCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCAAAGTGCCAC 759
Query 63333 GGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 63392
|| |||| ||| ||||| | | || || || ||||| || ||||| || | || |
Sbjct 758 GGCTCCAGGTACATGGCGAAGGCGCCGGGTCGCTTGTTGCCGCCCTGGTCGACATAGCGT 699
Query 63393 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCG 63452
|| ||||| || || || |||| ||| || | | ||||| || | || ||||| |||
Sbjct 698 GCTGTGTTGTTGTAGACCCTCAGCATGGGGACCAGCCCGTTGGAGTTGCCGTTGGTGCCG 639
Query 63453 GAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 63512
| ||| ||||| || ||| || || || | | | ||| ||||| ||||||
Sbjct 638 GCGATGTAGCTCCCGGTGGATCGGATGCAGCTGACGGCCACACCGATTCCTCCTGCCGAC 579
Query 63513 TTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATC 63572
|| ||||| | ||| || | || | |||||| ||||| ||||| ||||| || || ||
Sbjct 578 TTGGAGATGAGTGCACACTGCTTCAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTC 519
Query 63573 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 63632
||| | || || || ||||| || | || | || | ||||| || || || | ||
Sbjct 518 ATGGTGAGCAGGAAGCAGCTGGAGAGCTGAGGCCGGTTGGTTCCTGCGTTGAAGAGCGTG 459
Query 63633 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT 63692
|| || ||||| || ||||| || || || || || ||||| ||||| || || | |||
Sbjct 458 GGGGAGGCGTGGGTGAACCACTTCTCCGAGAGCAGGTTGTAGGTCTCGATGGCGGCGTCG 399
Query 63693 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACG 63752
|||||| | || ||||| || | || | ||| | ||||||||| || | || |
Sbjct 398 ATATCCGTCTTGTGGATTCCGACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCCGCC 339
Query 63753 ATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 63812
| ||| ||| || |||| || ||||||| |||| || || || || || |||||
Sbjct 338 ACTTTGCCGTTGATCTTCAGCAGGTAGGATCGCTCCAGCGTCTTGAAGCCGAAGAAGTTG 279
Query 63813 TATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACT 63872
|| || || |||| ||| | || || |||||||||| ||||| | | |||
Sbjct 278 TAGGAGAAATCTCTGTCGAAGATGATGGCCGAGTTGAGGCGGTCCTTGTGGGCGAGAACG 219
Query 63873 ATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATA 63931
|| || | ||| | ||| || || || || || || | || ||| || | ||
Sbjct 218 ATGTCGAGGGT-CTCCTTGGAGATCATGGGGGAGTGGCGTCTGTTCAGAGGGTTGATGTA 160
Query 63932 GTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGA 63991
| || | | ||||||||||| ||||| || | || || || |||||||| || || ||
Sbjct 159 GCTGTACAGGTCCTCCATCACCTCACTGAAAACCTTCTTCGTCTCCTTGTGCAGGTTGGA 100
Query 63992 TACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGC 64051
||||| || | |||||| || ||||| || ||||| |||| || || ||||| |
Sbjct 99 GACGGCGATCCGGGCGGCGAGGATGGCGTAGTCCGGGTGTTTGGTGGTGAGGGTGGCGGT 40
Query 64052 TATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTAC 64090
|| || || ||||| ||||||| || || || || ||
Sbjct 39 GATCTCTGCAGCCAGGGTGTCCAGCTCCACGGTGGTGAC 1
>seq388653
Length=382
Score = 118 bits (130), Expect = 1e-21
Identities = 268/391 (69%), Gaps = 18/391 (5%)
Strand=Plus/Minus
Query 62908 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA-AAGATT-ACT 62965
|||| || ||||| |||| || | | |||| || ||||| || || ||| || ||
Sbjct 382 TACACACTGCTACTTCATCAGGAGAGGTGTATTCCATGATCTCTGTACACAAGTTTGACG 323
Query 62966 ACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 63025
| || |||||||||||||| | ||| || || ||| |||||| ||||| |
Sbjct 322 A-ACGA-ATAGTTCCTAAATTCTTTTGGTTTGATTTACGGTTTGCCGCATCTTTATATAA 265
Query 63026 AATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC-CAGACGACTC--G 63082
|| | ||||| ||||| || || |||||||||| ||| |||| | || | || |
Sbjct 264 CATATACGGAGTTCCAGTCTCGATTTGAGATTCTAGAAT---TTTCTCCCACAATTCATG 208
Query 63083 AGCCTTTATTATAGATTTGTATCTCCTTTCT--CTTTCGTATAGTGT--ATACAATCGTT 63138
|| || ||| | ||| || || |||| ||||| ||| | ||| ||| ||
Sbjct 207 TGCTTTAATTGTT--TTTCTACCT--TTTCCAGCTTTCTCGTAGCTTTCATATAATGCTT 152
Query 63139 CGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACC 63198
| ||||| || || |||||| || ||||||||||||||| | |||||||| || | ||
Sbjct 151 CAAACTCTTCACCATAAACATCGTACAATCCAGGACATTCGTTAGGACACATTAAAGTCC 92
Query 63199 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 63258
| | |||||| || | || |||||||| || | ||||| | |||| | || | ||||
Sbjct 91 AGTTTCCGTCTTCTTGTACACGTTTCATGAATAAATCAGAAGTCCACATGGCAAAGAATA 32
Query 63259 GATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63289
|||||| | | ||| || ||||||||
Sbjct 31 AATCTCTTGCACGCATTTCTTCTTTTCCTGT 1
>seq231358
Length=2322
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||||||||| || || || || ||||| || || || |||||||| ||||| | ||| |
Sbjct 628 CCTCGTCTCTGCTGATGAGCTCATTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 687
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| || |||| |||||| || ||||| ||||||||||| || || || || ||||
Sbjct 688 TCAGCCAGAAGATGGCAGCGAAGGACCCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGG 747
Query 33446 CAATAAGTCTCTCTCC 33461
| | | || ||||||
Sbjct 748 CCACCACTCGCTCTCC 763
>seq28532
Length=8763
Score = 105 bits (116), Expect = 8e-18
Identities = 96/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| || || ||||| || || ||||| || || || |||||||||| ||| | ||| |
Sbjct 1945 CCTCATCCCTGCTAATCAGCTCATTGGAGAAGGTAAGCCCGGGCATTAAGCCTCTCTTCT 1886
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| |||||||| |||| |||||| || || || ||||||||||| || || |||||||| |
Sbjct 1885 TCAGCCAAAAGATGGCAGCGAACGAACCGGAGAAGAAGATTCCCTCCACGGCAGCAAAAG 1826
Query 33446 C 33446
|
Sbjct 1825 C 1825
>seq103378
Length=1867
Score = 96.9 bits (106), Expect = 4e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671
|| || ||||| || | ||||| || ||||| || ||||| ||||| || || | |||
Sbjct 579 GTGCCGGCATTGAACAGTGTAGGTGAGGCGTGGGTGAACCACTTTTCCGACAGCAAGTTG 520
Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731
||||||||||| |||| || || || | || ||||| || || || || | ||||| |
Sbjct 519 TACGTCTCAATGGCTGCATCGATGTCTCTTTTGTGAATCCCGACGGCCACTCTCATTAGC 460
Query 63732 ATGTGCTGAGGTCTTTCA 63749
|||||||| ||||| |||
Sbjct 459 ATGTGCTGGGGTCTCTCA 442
Score = 82.4 bits (90), Expect = 9e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 63215 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63274
|||||||||||| ||||| || || ||||| || || | || || ||||||| || ||
Sbjct 1333 CACTCGTTTCATGAAGAGGTCTGGGATCCACAGGGCGAAGAACAGGTCTCTGGCCCTCTG 1274
Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334
||||| || ||||| ||||| || | || | |||| | | | || ||||||||||
Sbjct 1273 CTCCTCTTTACCTGTGTTCTTCTTCATCTCTAAGAACTCAAACACGTCCAAATGCCACGG 1214
Query 63335 TTCCAAGTATATGGC 63349
|||| ||| | |||
Sbjct 1213 CTCCAGGTACACGGC 1199
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618855200006320
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