Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq44246 407 2e-108 seq388653 118 1e-21 seq231358 111 2e-19 seq28532 105 8e-18 seq103378 96.9 4e-15 >seq44246 Length=4029 Score = 407 bits (450), Expect = 2e-108 Identities = 1160/1779 (65%), Gaps = 12/1779 (1%) Strand=Plus/Minus Query 62319 AGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTA 62378 || ||||| || || || | || || ||||| |||| || | || ||||| || || Sbjct 1774 AGCAGATGGGGGTTGACGATCTGGAACTCTCCTGACAGGACCCGGCGGGTGTAGATGTTG 1715 Query 62379 CTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 62438 ||||| || | || | ||||| || || |||| || || || || || || || ||| Sbjct 1714 CTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGC 1655 Query 62439 ATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGT 62498 || || |||| || | || || || | |||| | ||| || || || || | Sbjct 1654 ATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGC 1595 Query 62499 TCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGT 62556 | ||| | ||| || || | || | | | || || || || | Sbjct 1594 TTCCAGTCCCACAGGTCGGTGGG--CGTCTTCTCCCACATGTCGTACTGGAGGATGCCCT 1537 Query 62557 TACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAAC 62616 | ||| || || ||| | || || ||||| || || || | || ||||| || | Sbjct 1536 TGCTGACGGGGGAGCCT-CGTACGTGTCGTAGGGGCCCAGCTCGGCGGCCAGTTCGCAGC 1478 Query 62617 TCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTT 62676 | ||||| | || |||| || ||||| || ||||||| | || || || || | Sbjct 1477 TGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCCT 1418 Query 62677 CCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAA 62736 | |||| ||||| || ||| | || || || ||||| || | || || || || | Sbjct 1417 CGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCAGGCCCTGGACGCCGA 1358 Query 62737 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62796 ||||||| || || || | ||| || || || || || || | || || | |||| Sbjct 1357 TACCGATCGGCCTGTGGCGCTTGTTGGACTGATCGGCCTCGGGCACCGGGTAGAAGTTAA 1298 Query 62797 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62856 | ||||| || || || || || | || || |||||| |||| || |||||| | Sbjct 1297 TCTCTATGATCTTGTTCAGGTTCTTCACGATCACTTTGGTCACAGACTCCAGTTTCTTGA 1238 Query 62857 AATCAAATCGCCCATCTA---TTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAA 62913 | ||||| || || | || ||||||| | || | || ||||||||||| | Sbjct 1237 AGTCAAAAGTCCGCTCGGGGGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACACA 1178 Query 62914 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 62973 | || ||||||| || | |||| | || || ||||| || || || ||||||| Sbjct 1177 CAGCGACCTCATCGCCACTGGAGTATTCAACGATTTCCGTGCAGAGGTTGCTGCACTTGA 1118 Query 62974 TAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 63033 | ||||| | || || || || ||||| |||| || || || || || || ||| | | Sbjct 1117 TGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACG 1058 Query 63034 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTA 63093 | || || | || |||| || || || || || | ||| || ||||||| | | Sbjct 1057 GCGTGCCCGACTCCGTCTGGGACTCGATGATGGCGTGCCACACCTGCTGAGCCTTCACCA 998 Query 63094 TAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCC 63153 | ||| | | || | || ||| | || || | || ||||| || |||| Sbjct 997 CACGCTTGACCCGGCCCTCCCGCTCATATTGGGTGTAGAGCTTCTCAAACTCCTCCCCCC 938 Query 63154 AAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCT 63213 | | ||||| || || | || |||||||||| ||||| || || || Sbjct 937 AGCACTCGTCCAGCCCGGGGCTCTCGCTGGGACACATCAGAGACCAGTCCTGGTTGCTCT 878 Query 63214 TCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTA 63272 ||| | ||||| || || || || ||||| | ||| || || |||||||||| ||| Sbjct 877 CCACCCTCTTCATGAACAGGTCGGGGATCCACA-AGCCGTAGAAGAGATCTCTGGCTCTC 819 Query 63273 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 63332 || ||||| || || || ||||| || || || ||||| | | | ||| | |||||| Sbjct 818 TGCTCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCAAAGTGCCAC 759 Query 63333 GGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 63392 || |||| ||| ||||| | | || || || ||||| || ||||| || | || | Sbjct 758 GGCTCCAGGTACATGGCGAAGGCGCCGGGTCGCTTGTTGCCGCCCTGGTCGACATAGCGT 699 Query 63393 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCG 63452 || ||||| || || || |||| ||| || | | ||||| || | || ||||| ||| Sbjct 698 GCTGTGTTGTTGTAGACCCTCAGCATGGGGACCAGCCCGTTGGAGTTGCCGTTGGTGCCG 639 Query 63453 GAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 63512 | ||| ||||| || ||| || || || | | | ||| ||||| |||||| Sbjct 638 GCGATGTAGCTCCCGGTGGATCGGATGCAGCTGACGGCCACACCGATTCCTCCTGCCGAC 579 Query 63513 TTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATC 63572 || ||||| | ||| || | || | |||||| ||||| ||||| ||||| || || || Sbjct 578 TTGGAGATGAGTGCACACTGCTTCAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTC 519 Query 63573 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 63632 ||| | || || || ||||| || | || | || | ||||| || || || | || Sbjct 518 ATGGTGAGCAGGAAGCAGCTGGAGAGCTGAGGCCGGTTGGTTCCTGCGTTGAAGAGCGTG 459 Query 63633 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT 63692 || || ||||| || ||||| || || || || || ||||| ||||| || || | ||| Sbjct 458 GGGGAGGCGTGGGTGAACCACTTCTCCGAGAGCAGGTTGTAGGTCTCGATGGCGGCGTCG 399 Query 63693 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACG 63752 |||||| | || ||||| || | || | ||| | ||||||||| || | || | Sbjct 398 ATATCCGTCTTGTGGATTCCGACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCCGCC 339 Query 63753 ATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 63812 | ||| ||| || |||| || ||||||| |||| || || || || || ||||| Sbjct 338 ACTTTGCCGTTGATCTTCAGCAGGTAGGATCGCTCCAGCGTCTTGAAGCCGAAGAAGTTG 279 Query 63813 TATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACT 63872 || || || |||| ||| | || || |||||||||| ||||| | | ||| Sbjct 278 TAGGAGAAATCTCTGTCGAAGATGATGGCCGAGTTGAGGCGGTCCTTGTGGGCGAGAACG 219 Query 63873 ATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATA 63931 || || | ||| | ||| || || || || || || | || ||| || | || Sbjct 218 ATGTCGAGGGT-CTCCTTGGAGATCATGGGGGAGTGGCGTCTGTTCAGAGGGTTGATGTA 160 Query 63932 GTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGA 63991 | || | | ||||||||||| ||||| || | || || || |||||||| || || || Sbjct 159 GCTGTACAGGTCCTCCATCACCTCACTGAAAACCTTCTTCGTCTCCTTGTGCAGGTTGGA 100 Query 63992 TACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGC 64051 ||||| || | |||||| || ||||| || ||||| |||| || || ||||| | Sbjct 99 GACGGCGATCCGGGCGGCGAGGATGGCGTAGTCCGGGTGTTTGGTGGTGAGGGTGGCGGT 40 Query 64052 TATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTAC 64090 || || || ||||| ||||||| || || || || || Sbjct 39 GATCTCTGCAGCCAGGGTGTCCAGCTCCACGGTGGTGAC 1 >seq388653 Length=382 Score = 118 bits (130), Expect = 1e-21 Identities = 268/391 (69%), Gaps = 18/391 (5%) Strand=Plus/Minus Query 62908 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA-AAGATT-ACT 62965 |||| || ||||| |||| || | | |||| || ||||| || || ||| || || Sbjct 382 TACACACTGCTACTTCATCAGGAGAGGTGTATTCCATGATCTCTGTACACAAGTTTGACG 323 Query 62966 ACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 63025 | || |||||||||||||| | ||| || || ||| |||||| ||||| | Sbjct 322 A-ACGA-ATAGTTCCTAAATTCTTTTGGTTTGATTTACGGTTTGCCGCATCTTTATATAA 265 Query 63026 AATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC-CAGACGACTC--G 63082 || | ||||| ||||| || || |||||||||| ||| |||| | || | || | Sbjct 264 CATATACGGAGTTCCAGTCTCGATTTGAGATTCTAGAAT---TTTCTCCCACAATTCATG 208 Query 63083 AGCCTTTATTATAGATTTGTATCTCCTTTCT--CTTTCGTATAGTGT--ATACAATCGTT 63138 || || ||| | ||| || || |||| ||||| ||| | ||| ||| || Sbjct 207 TGCTTTAATTGTT--TTTCTACCT--TTTCCAGCTTTCTCGTAGCTTTCATATAATGCTT 152 Query 63139 CGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACC 63198 | ||||| || || |||||| || ||||||||||||||| | |||||||| || | || Sbjct 151 CAAACTCTTCACCATAAACATCGTACAATCCAGGACATTCGTTAGGACACATTAAAGTCC 92 Query 63199 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 63258 | | |||||| || | || |||||||| || | ||||| | |||| | || | |||| Sbjct 91 AGTTTCCGTCTTCTTGTACACGTTTCATGAATAAATCAGAAGTCCACATGGCAAAGAATA 32 Query 63259 GATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63289 |||||| | | ||| || |||||||| Sbjct 31 AATCTCTTGCACGCATTTCTTCTTTTCCTGT 1 >seq231358 Length=2322 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| || || || || ||||| || || || |||||||| ||||| | ||| | Sbjct 628 CCTCGTCTCTGCTGATGAGCTCATTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 687 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || |||| |||||| || ||||| ||||||||||| || || || || |||| Sbjct 688 TCAGCCAGAAGATGGCAGCGAAGGACCCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGG 747 Query 33446 CAATAAGTCTCTCTCC 33461 | | | || |||||| Sbjct 748 CCACCACTCGCTCTCC 763 >seq28532 Length=8763 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| || || ||||| || || ||||| || || || |||||||||| ||| | ||| | Sbjct 1945 CCTCATCCCTGCTAATCAGCTCATTGGAGAAGGTAAGCCCGGGCATTAAGCCTCTCTTCT 1886 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | |||||||| |||| |||||| || || || ||||||||||| || || |||||||| | Sbjct 1885 TCAGCCAAAAGATGGCAGCGAACGAACCGGAGAAGAAGATTCCCTCCACGGCAGCAAAAG 1826 Query 33446 C 33446 | Sbjct 1825 C 1825 >seq103378 Length=1867 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || ||||| || | ||||| || ||||| || ||||| ||||| || || | ||| Sbjct 579 GTGCCGGCATTGAACAGTGTAGGTGAGGCGTGGGTGAACCACTTTTCCGACAGCAAGTTG 520 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 ||||||||||| |||| || || || | || ||||| || || || || | ||||| | Sbjct 519 TACGTCTCAATGGCTGCATCGATGTCTCTTTTGTGAATCCCGACGGCCACTCTCATTAGC 460 Query 63732 ATGTGCTGAGGTCTTTCA 63749 |||||||| ||||| ||| Sbjct 459 ATGTGCTGGGGTCTCTCA 442 Score = 82.4 bits (90), Expect = 9e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 63215 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63274 |||||||||||| ||||| || || ||||| || || | || || ||||||| || || Sbjct 1333 CACTCGTTTCATGAAGAGGTCTGGGATCCACAGGGCGAAGAACAGGTCTCTGGCCCTCTG 1274 Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 ||||| || ||||| ||||| || | || | |||| | | | || |||||||||| Sbjct 1273 CTCCTCTTTACCTGTGTTCTTCTTCATCTCTAAGAACTCAAACACGTCCAAATGCCACGG 1214 Query 63335 TTCCAAGTATATGGC 63349 |||| ||| | ||| Sbjct 1213 CTCCAGGTACACGGC 1199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618855200006320