Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_007023.1 Length=180500 Score E Sequences producing significant alignments: (Bits) Value seq449735 203 4e-47 seq506238 152 6e-32 seq508109 116 4e-21 seq128994 111 2e-19 seq522862 93.3 5e-14 >seq449735 Length=3187 Score = 203 bits (224), Expect = 4e-47 Identities = 393/575 (68%), Gaps = 14/575 (2%) Strand=Plus/Plus Query 41798 TACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGCGTAG 41857 |||||||||| |||||||| ||||| ||||| || || || |||||| | || ||| Sbjct 35 TACCTACGCCAATTATGGCAGGTGTTCGTACGCCAACACGCCAGTTTAGCTCGTGTGTAT 94 Query 41858 TGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCTGCGATCGTGAAGT 41917 | || || | || || || | ||| | || || | ||||| || || || | Sbjct 95 TAATAGAGTGTGGCGACAGCCTTGATTCAATTAACGCCACCTCGTCTGCAATTGTTAAAT 154 Query 41918 ATATTTCACAACGCGCGGGTATCGGTGTTAATGCTGGACACATTCGCGCAATGGGTTCTA 41977 | | || ||||| || || || || |||| || || | |||||| ||| ||||| Sbjct 155 ACGTATCGCAACGTGCCGGCATTGGCATTAACGCAGGTCGCATTCGTGCACTGGGTAGCC 214 Query 41978 AAATCCGTGGTGGTGAAGCAGTAC-ATACAGGCGTGATCCCGTTCTGGAAACATATTCAG 42036 | || || ||| ||||| |||| |||| || || || || | || || |||| Sbjct 215 ACATTCGCAATGGCGAAGC-GTACCATACGGGTTGTATTCCTTTTTATAAGCACTTTCAA 273 Query 42037 ACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTGTATTAT 42096 |||||||||||| |||||| ||||| || || ||||| || || ||||| |||| || Sbjct 274 ACAGCGGTTAAAAGCTGTTCGCAAGGCGGTGTACGTGGCGGCGCAGCAACCTTGTTCTAC 333 Query 42097 CCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTGAG 42156 ||| | |||||||| ||||| ||||||||| | || || ||||| ||| || ||||| Sbjct 334 CCGCTTTGGCATTTAGAAGTAGAAAACCTGTTAGTACTTAAAAATAACCGCGGGGTTGAT 393 Query 42157 AATAACCGTATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATGTATAAGCGT 42216 | ||||| | ||||| | ||||| ||||| ||| |||| | | ||||| |||| Sbjct 394 GACAACCGCGTGCGTCATTTAGATTACGGCGTACAGTTTAATAAACTAATGTACTCGCGT 453 Query 42217 TTAATCAATAACGATTACATCACACTGTTCAGCC---CTGACGTTGCAAATGATCGCCTG 42273 ||||| || |||| ||||| || |||| |||| |||| || || |||| Sbjct 454 TTAATTAAAGACGACTACATTACCTTGTTTAGCCCCTCTGATGTGCCA------GGCCTT 507 Query 42274 TATGATGCTTTCTATCAAGCTGATCAGACTGAGTTCGAAGAACTCTATACCAGTTTGGAA 42333 || ||||| || | | ||| | |||| ||||| || | || ||| | | ||| Sbjct 508 TACGATGCATTTTTTGAAGACCA--AGAC-GAGTTTGACGCGCTTTATGTAAAATACGAA 564 Query 42334 AAAGACCCAACGGTACGCAAGAAACGCATTAAAGC 42368 ||||| | | | || || |||||||||||||| Sbjct 565 CAAGACGAATCAATTCGTAAAAAACGCATTAAAGC 599 >seq506238 Length=275 Score = 152 bits (168), Expect = 6e-32 Identities = 144/184 (78%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 51923 GAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGGAAGATGCTGTG 51982 |||||||| || || |||||||||||||| ||||||| ||||| ||||||||||||| Sbjct 221 GAAGGTGGTCAACATTTAAACGTGAATGTGTTACGTCGTGAAACATTGGAAGATGCTGTT 162 Query 51983 AAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGCTTT 52042 ||||| ||||| || || ||||| ||||| || || || |||||||| ||||| || ||| Sbjct 161 AAACACCCTGAAAAATATCCACAATTAACTATTCGTGTATCAGGTTACGCAGTGCGTTTT 102 Query 52043 AATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAGCATG 52102 || || | || ||||||||||||| ||||| | | | || ||||| |||| || Sbjct 101 AACTCATTAACACCAGAACAACAGCAAGACGTATTAACACGTACATTTACAGAAACATTG 42 Query 52103 TAAT 52106 |||| Sbjct 41 TAAT 38 >seq508109 Length=334 Score = 116 bits (128), Expect = 4e-21 Identities = 211/306 (69%), Gaps = 2/306 (1%) Strand=Plus/Minus Query 93170 CCGCGTCCCTTTTGTTTCAGACCCAGGAACACGATCGCATTGACTTGTTTCAGGCGTGGA 93229 ||||| |||||||| |||| | |||||| || ||||| || | | ||||| Sbjct 305 CCGCGACCCTTTTGCTTCAATGATAAGAACACAATAGCATTTACATTAGCTAATCGTGGG 246 Query 93230 TCGTTACGCACGGCATCAACAACGGTAAACGCATCATCA-TAGGTCTTTGAGCTAACCAT 93288 || | || || ||| || ||| ||||||| ||| ||| | | || | ||| Sbjct 245 TCAGTTTTCATAGCTTCAGTTACAGTATACGCATCTTCAATAGTACGACCA-CTGATCAT 187 Query 93289 GAAATGTAGGTTGATTTGCTGTTGTCCTGCTTCTGCCAGGTTCGCTACGGAATCGAAAGC 93348 || |||||||||||||||| ||| || || | | | ||| || || || || Sbjct 186 AAAGTGTAGGTTGATTTGCTTTTGACCAGCAGCGGTTAAACGCGCAACACTGTCAAACGC 127 Query 93349 AACATCGAAGCCAGCATGTTTATACACCGATACCGCAACAGCCCCAGCAACCGCCGCTAA 93408 ||||| || ||||| |||||||| || ||||| |||| ||| |||||||| | ||||| Sbjct 126 TACATCAAAACCAGCGTGTTTATAAACTGATACAGCAATAGCACCAGCAACTGATGCTAA 67 Query 93409 ACGCGCTGCAACGTCTTTTGATACATCAGCAATGGTAAGGTTCGGCACAATGCCTTTAGA 93468 || ||||| |||| ||| ||||||||||| || || || || | ||| |||| || Sbjct 66 TTTAGCAGCAACTTCTTCTGACACATCAGCAATTGTTAGATTTGGGATAATACCTTGTGA 7 Query 93469 ACGCGC 93474 ||| || Sbjct 6 ACGAGC 1 >seq128994 Length=861 Score = 111 bits (122), Expect = 2e-19 Identities = 204/297 (69%), Gaps = 4/297 (1%) Strand=Plus/Minus Query 44089 TATCTGTGTATGCACGCTGTCAACGCTCTGGAAGCGATTCGTTTCTATGTCTCGTTTACC 44148 ||| |||| ||| | ||||| || | ||||||||||| ||||||||| ||| || Sbjct 472 TATTTGTGCATGATGTCAGTCAATGCCTTAGAAGCGATTCGCTTCTATGTCAGTTTTGCC 413 Query 44149 TTTACGTTCAACTTTGCCGAACAGGGCAAGATGGAAGGTAACGCAAAGATCATGCGTCTG 44208 | | |||| |||||| |||| | ||||||||||| || || || || || | Sbjct 412 TGTTCGTTTGCCTTTGCTGAACGTCGTGTTATGGAAGGTAATGCTAAAATTATTCGCTTA 353 Query 44209 ATTGCCCGTGATGAAGCACTTCATCAGAAAGGTACTCAAAGCAAGATCCGACTCTG--GC 44266 ||||||||||||||||| | || | || |||| ||| || | ||||| || Sbjct 352 ATTGCCCGTGATGAAGCCTTACACCTCAATAGTACACAA--CACATTTTAGCTCTGATGC 295 Query 44267 AGATGGGTAAAGATGACCCAGAAATGGCAGAAATCGCGTATCAGTACGAAGAAGAAGCAA 44326 || |||||||| ||||||||||||| |||||| || | ||| | ||||||| Sbjct 294 AGGGTGGTAAAGACGACCCAGAAATGGGAGAAATTGCTGCTGAGTGTAAGCAAGAAGCGT 235 Query 44327 CACAGATTTTCCTCGAAGTTTACGAGCAGGAAAAAGAATGGGCTGAACACTTATTCA 44383 | | ||| || ||| || || |||||||||||||| | ||||||||| Sbjct 234 ATGACTTATTCGTCAAAGCGGCGGAACAAGAAAAAGAATGGGCCAAGTACTTATTCA 178 >seq522862 Length=256 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/168 (73%), Gaps = 12/168 (7%) Strand=Plus/Plus Query 43696 TCTAACCTGCAATATCAAACCCTGTTAGATACCATTCAGGGACGTGGCCCTAACCTGGCG 43755 || |||||| |||||||||| || ||||| | || ||||| ||| | |||||| |||| Sbjct 2 TCAAACCTGAAATATCAAACACTATTAGACTCGATACAGGGTCGTAGTCCTAACATGGCA 61 Query 43756 TTTCTCCCGATTG---CCT---CTGATGTTTCAATGGAAACGTGGATCGAAACATGGGCT 43809 || || ||||| | ||| |||| ||| || || ||||||||||| ||| | Sbjct 62 TTACTTCCGATCGTATCCTTACCTGA-GTTA-----GAGACATGGATCGAAACCTGGTCC 115 Query 43810 TTCAGTGAAACAATTCATAGCCGCAGTTATACACACATTCAGCGTAAC 43857 |||||||| || || || |||| || || ||||| |||| |||||| Sbjct 116 TTCAGTGAGACTATCCACAGCCAGAGCTACACACATATTCTTCGTAAC 163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573678716363200