Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_007023.1
Length=180500
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 203 4e-47
seq506238 152 6e-32
seq508109 116 4e-21
seq128994 111 2e-19
seq522862 93.3 5e-14
>seq449735
Length=3187
Score = 203 bits (224), Expect = 4e-47
Identities = 393/575 (68%), Gaps = 14/575 (2%)
Strand=Plus/Plus
Query 41798 TACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGCGTAG 41857
|||||||||| |||||||| ||||| ||||| || || || |||||| | || |||
Sbjct 35 TACCTACGCCAATTATGGCAGGTGTTCGTACGCCAACACGCCAGTTTAGCTCGTGTGTAT 94
Query 41858 TGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCTGCGATCGTGAAGT 41917
| || || | || || || | ||| | || || | ||||| || || || |
Sbjct 95 TAATAGAGTGTGGCGACAGCCTTGATTCAATTAACGCCACCTCGTCTGCAATTGTTAAAT 154
Query 41918 ATATTTCACAACGCGCGGGTATCGGTGTTAATGCTGGACACATTCGCGCAATGGGTTCTA 41977
| | || ||||| || || || || |||| || || | |||||| ||| |||||
Sbjct 155 ACGTATCGCAACGTGCCGGCATTGGCATTAACGCAGGTCGCATTCGTGCACTGGGTAGCC 214
Query 41978 AAATCCGTGGTGGTGAAGCAGTAC-ATACAGGCGTGATCCCGTTCTGGAAACATATTCAG 42036
| || || ||| ||||| |||| |||| || || || || | || || ||||
Sbjct 215 ACATTCGCAATGGCGAAGC-GTACCATACGGGTTGTATTCCTTTTTATAAGCACTTTCAA 273
Query 42037 ACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTGTATTAT 42096
|||||||||||| |||||| ||||| || || ||||| || || ||||| |||| ||
Sbjct 274 ACAGCGGTTAAAAGCTGTTCGCAAGGCGGTGTACGTGGCGGCGCAGCAACCTTGTTCTAC 333
Query 42097 CCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTGAG 42156
||| | |||||||| ||||| ||||||||| | || || ||||| ||| || |||||
Sbjct 334 CCGCTTTGGCATTTAGAAGTAGAAAACCTGTTAGTACTTAAAAATAACCGCGGGGTTGAT 393
Query 42157 AATAACCGTATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATGTATAAGCGT 42216
| ||||| | ||||| | ||||| ||||| ||| |||| | | ||||| ||||
Sbjct 394 GACAACCGCGTGCGTCATTTAGATTACGGCGTACAGTTTAATAAACTAATGTACTCGCGT 453
Query 42217 TTAATCAATAACGATTACATCACACTGTTCAGCC---CTGACGTTGCAAATGATCGCCTG 42273
||||| || |||| ||||| || |||| |||| |||| || || ||||
Sbjct 454 TTAATTAAAGACGACTACATTACCTTGTTTAGCCCCTCTGATGTGCCA------GGCCTT 507
Query 42274 TATGATGCTTTCTATCAAGCTGATCAGACTGAGTTCGAAGAACTCTATACCAGTTTGGAA 42333
|| ||||| || | | ||| | |||| ||||| || | || ||| | | |||
Sbjct 508 TACGATGCATTTTTTGAAGACCA--AGAC-GAGTTTGACGCGCTTTATGTAAAATACGAA 564
Query 42334 AAAGACCCAACGGTACGCAAGAAACGCATTAAAGC 42368
||||| | | | || || ||||||||||||||
Sbjct 565 CAAGACGAATCAATTCGTAAAAAACGCATTAAAGC 599
>seq506238
Length=275
Score = 152 bits (168), Expect = 6e-32
Identities = 144/184 (78%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 51923 GAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGGAAGATGCTGTG 51982
|||||||| || || |||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 221 GAAGGTGGTCAACATTTAAACGTGAATGTGTTACGTCGTGAAACATTGGAAGATGCTGTT 162
Query 51983 AAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGCTTT 52042
||||| ||||| || || ||||| ||||| || || || |||||||| ||||| || |||
Sbjct 161 AAACACCCTGAAAAATATCCACAATTAACTATTCGTGTATCAGGTTACGCAGTGCGTTTT 102
Query 52043 AATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAGCATG 52102
|| || | || ||||||||||||| ||||| | | | || ||||| |||| ||
Sbjct 101 AACTCATTAACACCAGAACAACAGCAAGACGTATTAACACGTACATTTACAGAAACATTG 42
Query 52103 TAAT 52106
||||
Sbjct 41 TAAT 38
>seq508109
Length=334
Score = 116 bits (128), Expect = 4e-21
Identities = 211/306 (69%), Gaps = 2/306 (1%)
Strand=Plus/Minus
Query 93170 CCGCGTCCCTTTTGTTTCAGACCCAGGAACACGATCGCATTGACTTGTTTCAGGCGTGGA 93229
||||| |||||||| |||| | |||||| || ||||| || | | |||||
Sbjct 305 CCGCGACCCTTTTGCTTCAATGATAAGAACACAATAGCATTTACATTAGCTAATCGTGGG 246
Query 93230 TCGTTACGCACGGCATCAACAACGGTAAACGCATCATCA-TAGGTCTTTGAGCTAACCAT 93288
|| | || || ||| || ||| ||||||| ||| ||| | | || | |||
Sbjct 245 TCAGTTTTCATAGCTTCAGTTACAGTATACGCATCTTCAATAGTACGACCA-CTGATCAT 187
Query 93289 GAAATGTAGGTTGATTTGCTGTTGTCCTGCTTCTGCCAGGTTCGCTACGGAATCGAAAGC 93348
|| |||||||||||||||| ||| || || | | | ||| || || || ||
Sbjct 186 AAAGTGTAGGTTGATTTGCTTTTGACCAGCAGCGGTTAAACGCGCAACACTGTCAAACGC 127
Query 93349 AACATCGAAGCCAGCATGTTTATACACCGATACCGCAACAGCCCCAGCAACCGCCGCTAA 93408
||||| || ||||| |||||||| || ||||| |||| ||| |||||||| | |||||
Sbjct 126 TACATCAAAACCAGCGTGTTTATAAACTGATACAGCAATAGCACCAGCAACTGATGCTAA 67
Query 93409 ACGCGCTGCAACGTCTTTTGATACATCAGCAATGGTAAGGTTCGGCACAATGCCTTTAGA 93468
|| ||||| |||| ||| ||||||||||| || || || || | ||| |||| ||
Sbjct 66 TTTAGCAGCAACTTCTTCTGACACATCAGCAATTGTTAGATTTGGGATAATACCTTGTGA 7
Query 93469 ACGCGC 93474
||| ||
Sbjct 6 ACGAGC 1
>seq128994
Length=861
Score = 111 bits (122), Expect = 2e-19
Identities = 204/297 (69%), Gaps = 4/297 (1%)
Strand=Plus/Minus
Query 44089 TATCTGTGTATGCACGCTGTCAACGCTCTGGAAGCGATTCGTTTCTATGTCTCGTTTACC 44148
||| |||| ||| | ||||| || | ||||||||||| ||||||||| ||| ||
Sbjct 472 TATTTGTGCATGATGTCAGTCAATGCCTTAGAAGCGATTCGCTTCTATGTCAGTTTTGCC 413
Query 44149 TTTACGTTCAACTTTGCCGAACAGGGCAAGATGGAAGGTAACGCAAAGATCATGCGTCTG 44208
| | |||| |||||| |||| | ||||||||||| || || || || || |
Sbjct 412 TGTTCGTTTGCCTTTGCTGAACGTCGTGTTATGGAAGGTAATGCTAAAATTATTCGCTTA 353
Query 44209 ATTGCCCGTGATGAAGCACTTCATCAGAAAGGTACTCAAAGCAAGATCCGACTCTG--GC 44266
||||||||||||||||| | || | || |||| ||| || | ||||| ||
Sbjct 352 ATTGCCCGTGATGAAGCCTTACACCTCAATAGTACACAA--CACATTTTAGCTCTGATGC 295
Query 44267 AGATGGGTAAAGATGACCCAGAAATGGCAGAAATCGCGTATCAGTACGAAGAAGAAGCAA 44326
|| |||||||| ||||||||||||| |||||| || | ||| | |||||||
Sbjct 294 AGGGTGGTAAAGACGACCCAGAAATGGGAGAAATTGCTGCTGAGTGTAAGCAAGAAGCGT 235
Query 44327 CACAGATTTTCCTCGAAGTTTACGAGCAGGAAAAAGAATGGGCTGAACACTTATTCA 44383
| | ||| || ||| || || |||||||||||||| | |||||||||
Sbjct 234 ATGACTTATTCGTCAAAGCGGCGGAACAAGAAAAAGAATGGGCCAAGTACTTATTCA 178
>seq522862
Length=256
Score = 93.3 bits (102), Expect = 5e-14
Identities = 123/168 (73%), Gaps = 12/168 (7%)
Strand=Plus/Plus
Query 43696 TCTAACCTGCAATATCAAACCCTGTTAGATACCATTCAGGGACGTGGCCCTAACCTGGCG 43755
|| |||||| |||||||||| || ||||| | || ||||| ||| | |||||| ||||
Sbjct 2 TCAAACCTGAAATATCAAACACTATTAGACTCGATACAGGGTCGTAGTCCTAACATGGCA 61
Query 43756 TTTCTCCCGATTG---CCT---CTGATGTTTCAATGGAAACGTGGATCGAAACATGGGCT 43809
|| || ||||| | ||| |||| ||| || || ||||||||||| ||| |
Sbjct 62 TTACTTCCGATCGTATCCTTACCTGA-GTTA-----GAGACATGGATCGAAACCTGGTCC 115
Query 43810 TTCAGTGAAACAATTCATAGCCGCAGTTATACACACATTCAGCGTAAC 43857
|||||||| || || || |||| || || ||||| |||| ||||||
Sbjct 116 TTCAGTGAGACTATCCACAGCCAGAGCTACACACATATTCTTCGTAAC 163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 573678716363200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |