Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq44246 172 1e-37 >seq44246 Length=4029 Score = 172 bits (190), Expect = 1e-37 Identities = 602/926 (65%), Gaps = 18/926 (2%) Strand=Plus/Plus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450 ||||| | |||||| ||||| ||||||||| ||||| || | | | || Sbjct 286 TTCGGCTTCAAGACGCTGGAGCGATCCTACCTGCTGAAGATCAACGGCAAAGTGGCGGAG 345 Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510 || |||||||| ||| | ||| | || | | || ||||| ||||| | || ||| Sbjct 346 CGGCCGCAGCACATGCTCATGAGGGTGTCGGTCGGAATCCACAAGACGGATATCGACGCC 405 Query 363511 GCGATTGAAACATATAAGCT--TCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACAA 363568 || || || || || || || ||| | | ||| ||||| |||||| | || || Sbjct 406 GCCATCGAGACCTACAACCTGCTCTCGGAGAA-GTGG-TTCACCCACGCCTCCCCCACGC 463 Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628 | | ||| || ||||| || ||| | || ||||| || || | ||||||| Sbjct 464 TCTTCAACGCAGGAACCAACCGGCCTCAGCTCTCCAGCTGCTTCCTGCTCACCATGAAGG 523 Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688 |||| ||||||||| |||| ||||| || ||| | ||||| || || |||||| | Sbjct 524 ACGACAGCATCGAGGGCATCTACGACACGCTGAAGCAGTGTGCACTCATCTCCAAGTCGG 583 Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATGTTCG-TGCACAGAACAGTTACATTCGCGGC 363747 |||| ||||| ||||| | || | | || | ||| | || ||||| |||| Sbjct 584 CAGGAGGAATCGGTGTGGCCGTCAGCTGCATCCGATCCACCG-GGAGCTACATCGCCGGC 642 Query 363748 ACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGG 363807 || || |||| || |||||||| |||||||| | || | |||| || || | Sbjct 643 ACCAACGGCAACTCCAACGGGCTGGTCCCCATGCTGAGGGTCTACAACAACACAGCACGC 702 Query 363808 TACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCAT 363867 || ||||||||||| || ||||| || || || || ||||| || ||||| Sbjct 703 TATGTCGACCAGGGCGGCAACAAGCGACCCGGCGCCTTCGCCATGTACCTGGAGCCGTGG 762 Query 363868 CATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGT 363927 || || | || || || || ||||| ||| |||||||| || ||||| | | Sbjct 763 CACTTTGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACGGGGAAGGAGGAGCAGAGA 822 Query 363928 GCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG-GC 363986 || | ||||| ||||| | | ||| | | |||| || |||||| | |||||| || Sbjct 823 GCCAGAGATCTCTTCTACGGCTTGTGGATCCCCGACCTGTTCATGAAGAGGGTGGAGAGC 882 Query 363987 AGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGG 364046 | || | ||||| || | || || ||| | || || || ||| ||||| Sbjct 883 A-ACCAGGACTGGTCTCTGATGTGTCCCAGCGAGAGCCCCGGGCTGGACGAGTGCTGGGG 941 Query 364047 TGACGACTAT--GTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAG--- 364101 || || | | | |||||| || || ||||| |||||| || || ||| Sbjct 942 GGAGGAGTTTGAGAAGCTCTACACCCAA--TATGAGCGGGAGGG-CCGGGTC--AAGCGT 996 Query 364102 ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACA 364161 | || ||| || | ||| |||||||| || || |||| ||| | || || Sbjct 997 GTGGTGAAGGCTCAGCAGGTGTGGCACGCCATCATCGAGTCCCAGACGGAGTCGGGCACG 1056 Query 364162 CCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACA 364221 || || ||| |||||||||| | |||||| | ||| |||||||||| |||| || || Sbjct 1057 CCGTACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGAACC 1116 Query 364222 ATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCC 364281 || || |||||||| || || || || |||||||| || | ||| ||| || Sbjct 1117 ATCAAGTGCAGCAACCTCTGCACGGAAATCGTTGAATACTCCAGTGGCGATGAGGTCGCT 1176 Query 364282 GTATGTAACCTTGCGTCGATCGCGCT 364307 || ||||| || || || ||||| || Sbjct 1177 GTGTGTAATCTGGCCTCCATCGCTCT 1202 Score = 84.2 bits (92), Expect = 6e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || || ||||||||||| || || || |||||||| || |||||||||| | |||| | Sbjct 1647 GCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCC 1706 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | || ||||| | || | |||||||| || || ||||| || | | | || || Sbjct 1707 TACACCAGCAACATCTACACCCGCCGGGTCCTGTCAGGAGAGTTCCAGATCGTCAACCCC 1766 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAAC 364923 | || ||||||| || | || | ||||||||||| || ||||||||| Sbjct 1767 CATCTGCTCAAGGACCTGACGGAGAGAGGGCTGTGGGGCGAGGAGATGAAGAAC 1820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1294578127542564