Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq44246 172 1e-37
>seq44246
Length=4029
Score = 172 bits (190), Expect = 1e-37
Identities = 602/926 (65%), Gaps = 18/926 (2%)
Strand=Plus/Plus
Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450
||||| | |||||| ||||| ||||||||| ||||| || | | | ||
Sbjct 286 TTCGGCTTCAAGACGCTGGAGCGATCCTACCTGCTGAAGATCAACGGCAAAGTGGCGGAG 345
Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510
|| |||||||| ||| | ||| | || | | || ||||| ||||| | || |||
Sbjct 346 CGGCCGCAGCACATGCTCATGAGGGTGTCGGTCGGAATCCACAAGACGGATATCGACGCC 405
Query 363511 GCGATTGAAACATATAAGCT--TCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACAA 363568
|| || || || || || || ||| | | ||| ||||| |||||| | || ||
Sbjct 406 GCCATCGAGACCTACAACCTGCTCTCGGAGAA-GTGG-TTCACCCACGCCTCCCCCACGC 463
Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628
| | ||| || ||||| || ||| | || ||||| || || | |||||||
Sbjct 464 TCTTCAACGCAGGAACCAACCGGCCTCAGCTCTCCAGCTGCTTCCTGCTCACCATGAAGG 523
Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688
|||| ||||||||| |||| ||||| || ||| | ||||| || || |||||| |
Sbjct 524 ACGACAGCATCGAGGGCATCTACGACACGCTGAAGCAGTGTGCACTCATCTCCAAGTCGG 583
Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATGTTCG-TGCACAGAACAGTTACATTCGCGGC 363747
|||| ||||| ||||| | || | | || | ||| | || ||||| ||||
Sbjct 584 CAGGAGGAATCGGTGTGGCCGTCAGCTGCATCCGATCCACCG-GGAGCTACATCGCCGGC 642
Query 363748 ACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGG 363807
|| || |||| || |||||||| |||||||| | || | |||| || || |
Sbjct 643 ACCAACGGCAACTCCAACGGGCTGGTCCCCATGCTGAGGGTCTACAACAACACAGCACGC 702
Query 363808 TACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCAT 363867
|| ||||||||||| || ||||| || || || || ||||| || |||||
Sbjct 703 TATGTCGACCAGGGCGGCAACAAGCGACCCGGCGCCTTCGCCATGTACCTGGAGCCGTGG 762
Query 363868 CATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGT 363927
|| || | || || || || ||||| ||| |||||||| || ||||| | |
Sbjct 763 CACTTTGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACGGGGAAGGAGGAGCAGAGA 822
Query 363928 GCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG-GC 363986
|| | ||||| ||||| | | ||| | | |||| || |||||| | |||||| ||
Sbjct 823 GCCAGAGATCTCTTCTACGGCTTGTGGATCCCCGACCTGTTCATGAAGAGGGTGGAGAGC 882
Query 363987 AGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGG 364046
| || | ||||| || | || || ||| | || || || ||| |||||
Sbjct 883 A-ACCAGGACTGGTCTCTGATGTGTCCCAGCGAGAGCCCCGGGCTGGACGAGTGCTGGGG 941
Query 364047 TGACGACTAT--GTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAG--- 364101
|| || | | | |||||| || || ||||| |||||| || || |||
Sbjct 942 GGAGGAGTTTGAGAAGCTCTACACCCAA--TATGAGCGGGAGGG-CCGGGTC--AAGCGT 996
Query 364102 ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACA 364161
| || ||| || | ||| |||||||| || || |||| ||| | || ||
Sbjct 997 GTGGTGAAGGCTCAGCAGGTGTGGCACGCCATCATCGAGTCCCAGACGGAGTCGGGCACG 1056
Query 364162 CCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACA 364221
|| || ||| |||||||||| | |||||| | ||| |||||||||| |||| || ||
Sbjct 1057 CCGTACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGAACC 1116
Query 364222 ATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCC 364281
|| || |||||||| || || || || |||||||| || | ||| ||| ||
Sbjct 1117 ATCAAGTGCAGCAACCTCTGCACGGAAATCGTTGAATACTCCAGTGGCGATGAGGTCGCT 1176
Query 364282 GTATGTAACCTTGCGTCGATCGCGCT 364307
|| ||||| || || || ||||| ||
Sbjct 1177 GTGTGTAATCTGGCCTCCATCGCTCT 1202
Score = 84.2 bits (92), Expect = 6e-11
Identities = 123/174 (71%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809
|| || ||||||||||| || || || |||||||| || |||||||||| | |||| |
Sbjct 1647 GCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCC 1706
Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869
| || ||||| | || | |||||||| || || ||||| || | | | || ||
Sbjct 1707 TACACCAGCAACATCTACACCCGCCGGGTCCTGTCAGGAGAGTTCCAGATCGTCAACCCC 1766
Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAAC 364923
| || ||||||| || | || | ||||||||||| || |||||||||
Sbjct 1767 CATCTGCTCAAGGACCTGACGGAGAGAGGGCTGTGGGGCGAGGAGATGAAGAAC 1820
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1294578127542564
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |