Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq152719 118 9e-22
seq388653 109 5e-19
seq6427 93.3 4e-14
>seq152719
Length=2073
Score = 118 bits (130), Expect = 9e-22
Identities = 167/233 (72%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046
||| ||||| | ||||| || || | ||||| || | || || | || || || |
Sbjct 730 CAAGATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACTATCACTCTGGAGGTTGAACC 671
Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106
|| ||||||||| ||| | || ||| ||||| || || || ||||| ||||| ||
Sbjct 670 CAGCGACACCATTGAGAATGTAAAAGCTAAGATCCAGGATAAGGAGGGCATCCCTCCTGA 611
Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGAT 24164
||| ||||| ||||| | | ||||||||| || ||||||| | | | ||||| ||
Sbjct 610 TCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCATGTCAG--AT 553
Query 24165 TATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
|||||||| || |||||||| || || ||| | ||| | | |||||||||||
Sbjct 552 TATAACATCCAGAAAGAATCCACCATCCATCTTGTGCTGCGCTTGAGAGGAGG 500
Score = 89.7 bits (98), Expect = 4e-13
Identities = 123/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 24046 CCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCG 24105
||||||||||||| ||| | |||||| ||||| || || |||||||| ||||| |
Sbjct 443 CCAACGACACCATTGAGAATGTCAAAGCTAAGATCCAGGATAAGGAAGGCATCCCTCCAG 384
Query 24106 ATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATT 24165
| || ||||| || || | | ||||||||| || ||||| | | | | || ||| |
Sbjct 383 ACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCCGACT 324
Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
| ||||| || ||||| || |||||| | || || | ||||||||||
Sbjct 323 ACAACATCCAGAAAGAGTCCTGCATTCATCTGGTCTTGCGGCTGAGAGGAGG 272
>seq388653
Length=382
Score = 109 bits (120), Expect = 5e-19
Identities = 213/312 (68%), Gaps = 2/312 (1%)
Strand=Plus/Minus
Query 132854 CGAATAACTCCCAAGtttttttGATTGTTTTTCTCGTTTACGTTATCTTTATGCAACATG 132913
|||||| ||| || || ||||| || ||| |||| | |||||||| |||||
Sbjct 320 CGAATAGTTCCTAAATTCTTTTGGTTTGATTTACGGTTTGCCGCATCTTTATATAACATA 261
Query 132914 TACGGACCTCCGGTTTCGACCTGAATTTCGATAATTTTTCTGTGAAGATCTAACGCCAAA 132973
|||||| ||| || |||| ||| ||| | |||||| || | || | |
Sbjct 260 TACGGAGTTCCAGTCTCGATTTGAGATTCTAGAATTTT-CTCCCACAATTCATGTGCTTT 202
Query 132974 ATTTGTTCTTTAAACTTGCCCTGAGT-CTCGTAACTTTCGTATAATCGCTCAAATTCTTC 133032
| ||||| || | ||| || | | |||||| ||||| |||||| ||||| |||||
Sbjct 201 AATTGTTTTTCTACCTTTTCCAGCTTTCTCGTAGCTTTCATATAATGCTTCAAACTCTTC 142
Query 133033 GCCATAGCAGTCGTTCAAACCGGGACACTCGTCAGGACACATCAATGACCATTTTTCTCC 133092
||||| |||| ||| || ||||| |||| ||||||||| || | ||| ||| | |
Sbjct 141 ACCATAAACATCGTACAATCCAGGACATTCGTTAGGACACATTAAAGTCCAGTTTCCGTC 82
Query 133093 TGCGCTCACCCTTTTCATGAACAACGAAGGTGTCCACATGGCAAAAAATAAATCGCGAGC 133152
| | || | ||||||||| || || |||||||||||||| |||||||| | ||
Sbjct 81 TTCTTGTACACGTTTCATGAATAAATCAGAAGTCCACATGGCAAAGAATAAATCTCTTGC 22
Query 133153 CTTCATATCTTC 133164
||| |||||
Sbjct 21 ACGCATTTCTTC 10
>seq6427
Length=3314
Score = 93.3 bits (102), Expect = 4e-14
Identities = 117/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086
|| ||| | || || ||| ||| |||||||||||| | ||||| ||||| |||
Sbjct 3298 ATCACCCTGGAGGTTGAGCCCAGCGACACCATCGAAAATGTCAAGGCCAAGATCCAGGAC 3239
Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146
|| |||||||| || || ||||| ||||| ||||| | | ||||||||| || ||||||
Sbjct 3238 AAGGAAGGCATTCCCCCAGATCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGAT 3179
Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187
| | | | | || ||| || ||||| || || || || ||
Sbjct 3178 GGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCAC 3138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427182450972810
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |