Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq152719 118 9e-22 seq388653 109 5e-19 seq6427 93.3 4e-14 >seq152719 Length=2073 Score = 118 bits (130), Expect = 9e-22 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | ||||| || || | ||||| || | || || | || || || | Sbjct 730 CAAGATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACTATCACTCTGGAGGTTGAACC 671 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || ||||||||| ||| | || ||| ||||| || || || ||||| ||||| || Sbjct 670 CAGCGACACCATTGAGAATGTAAAAGCTAAGATCCAGGATAAGGAGGGCATCCCTCCTGA 611 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGAT 24164 ||| ||||| ||||| | | ||||||||| || ||||||| | | | ||||| || Sbjct 610 TCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCATGTCAG--AT 553 Query 24165 TATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| || |||||||| || || ||| | ||| | | ||||||||||| Sbjct 552 TATAACATCCAGAAAGAATCCACCATCCATCTTGTGCTGCGCTTGAGAGGAGG 500 Score = 89.7 bits (98), Expect = 4e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 24046 CCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCG 24105 ||||||||||||| ||| | |||||| ||||| || || |||||||| ||||| | Sbjct 443 CCAACGACACCATTGAGAATGTCAAAGCTAAGATCCAGGATAAGGAAGGCATCCCTCCAG 384 Query 24106 ATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATT 24165 | || ||||| || || | | ||||||||| || ||||| | | | | || ||| | Sbjct 383 ACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCCGACT 324 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 | ||||| || ||||| || |||||| | || || | |||||||||| Sbjct 323 ACAACATCCAGAAAGAGTCCTGCATTCATCTGGTCTTGCGGCTGAGAGGAGG 272 >seq388653 Length=382 Score = 109 bits (120), Expect = 5e-19 Identities = 213/312 (68%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 132854 CGAATAACTCCCAAGtttttttGATTGTTTTTCTCGTTTACGTTATCTTTATGCAACATG 132913 |||||| ||| || || ||||| || ||| |||| | |||||||| ||||| Sbjct 320 CGAATAGTTCCTAAATTCTTTTGGTTTGATTTACGGTTTGCCGCATCTTTATATAACATA 261 Query 132914 TACGGACCTCCGGTTTCGACCTGAATTTCGATAATTTTTCTGTGAAGATCTAACGCCAAA 132973 |||||| ||| || |||| ||| ||| | |||||| || | || | | Sbjct 260 TACGGAGTTCCAGTCTCGATTTGAGATTCTAGAATTTT-CTCCCACAATTCATGTGCTTT 202 Query 132974 ATTTGTTCTTTAAACTTGCCCTGAGT-CTCGTAACTTTCGTATAATCGCTCAAATTCTTC 133032 | ||||| || | ||| || | | |||||| ||||| |||||| ||||| ||||| Sbjct 201 AATTGTTTTTCTACCTTTTCCAGCTTTCTCGTAGCTTTCATATAATGCTTCAAACTCTTC 142 Query 133033 GCCATAGCAGTCGTTCAAACCGGGACACTCGTCAGGACACATCAATGACCATTTTTCTCC 133092 ||||| |||| ||| || ||||| |||| ||||||||| || | ||| ||| | | Sbjct 141 ACCATAAACATCGTACAATCCAGGACATTCGTTAGGACACATTAAAGTCCAGTTTCCGTC 82 Query 133093 TGCGCTCACCCTTTTCATGAACAACGAAGGTGTCCACATGGCAAAAAATAAATCGCGAGC 133152 | | || | ||||||||| || || |||||||||||||| |||||||| | || Sbjct 81 TTCTTGTACACGTTTCATGAATAAATCAGAAGTCCACATGGCAAAGAATAAATCTCTTGC 22 Query 133153 CTTCATATCTTC 133164 ||| ||||| Sbjct 21 ACGCATTTCTTC 10 >seq6427 Length=3314 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086 || ||| | || || ||| ||| |||||||||||| | ||||| ||||| ||| Sbjct 3298 ATCACCCTGGAGGTTGAGCCCAGCGACACCATCGAAAATGTCAAGGCCAAGATCCAGGAC 3239 Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146 || |||||||| || || ||||| ||||| ||||| | | ||||||||| || |||||| Sbjct 3238 AAGGAAGGCATTCCCCCAGATCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGAT 3179 Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 | | | | | || ||| || ||||| || || || || || Sbjct 3178 GGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCAC 3138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427182450972810