Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_007804.2 Length=39104 Score E Sequences producing significant alignments: (Bits) Value seq24926 95.1 3e-15 seq498858 93.3 1e-14 seq519417 80.6 7e-11 >seq24926 Length=5984 Score = 95.1 bits (104), Expect = 3e-15 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 2864 GCAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCCAACTGAGCTAA 2923 |||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||| Sbjct 5826 GCAGGATTCGAACCTGCGACCACCCGCTTAGAAGGCGGGTGCTCTATCCAACTGAGCTAC 5767 Query 2924 TG 2925 || Sbjct 5766 TG 5765 >seq498858 Length=398 Score = 93.3 bits (102), Expect = 1e-14 Identities = 110/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 30363 GCGACATCGTTGAGATAACTGCGTTTACTAATTGGGCTTCATAACCTAGCGTGCCGTTCA 30422 ||||| | | ||| ||||| ||||| || || || |||||||| || ||||| ||| | | Sbjct 111 GCGACTT-GATGAAATAACAGCGTTAACAAACTGCGCTTCATAGCCAAGCGTTCCGCTAA 169 Query 30423 CAACATGGGTTTTCTGAGCCACGGCAAACGGGTTCATTCCCCACTGCGCAGCCTGCATTG 30482 |||| || || || || | || || ||||| |||||| ||| || |||| ||||| Sbjct 170 CAACGTGAGTCTTTTGCCCAACTGCGAACGGATTCATTTTCCATTGAGCAGATTGCATCA 229 Query 30483 CCACGGCCATGCAATCAGCTGGTTTCCC 30510 | | ||||||||||| ||||| || || Sbjct 230 CGATAGCCATGCAATCGGCTGGATTGCC 257 >seq519417 Length=265 Score = 80.6 bits (88), Expect = 7e-11 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 542 ATCCTCaaaaaaaTTAAATGGCCTGACAAGGTGAAGAACCTCGAACTGATTGGTAAGCAC 601 ||| | || ||||| || |||||||||||||| |||||||| || | |||||||||| Sbjct 95 ATCATTAAGAAAATCAAGTGGCCTGACAAGGTTAAGAACCTAGAGTTACTTGGTAAGCAT 154 Query 602 GTCGACGTCAACGCATTCAAAGAA 625 | | ||| ||||||||||||||| Sbjct 155 GCCAGCGTTAACGCATTCAAAGAA 178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124231088076984