Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_007808.1 Length=49639 Score E Sequences producing significant alignments: (Bits) Value seq417094 122 3e-23 seq521152 116 1e-21 seq520451 105 2e-18 seq76150 98.7 3e-16 seq498376 84.2 7e-12 >seq417094 Length=394 Score = 122 bits (134), Expect = 3e-23 Identities = 211/303 (70%), Gaps = 8/303 (3%) Strand=Plus/Minus Query 19659 GGGCTTGGAGCCCTTGGTTTCCACACCTATCTGCAAGCTAAGATGATCCCACTTGAGTCT 19718 || ||||| || ||||| ||||| || || | || || ||||| | |||| || Sbjct 300 GGTCTTGGTGCTCTTGGATTCCATACATACTTACAGCAAAATATGATTGCGTTTGAATCA 241 Query 19719 TTCGAGGCTCATATGATTAACTTAGAAATCTTC--CAACATCTACA-TGAGGAGGCCACT 19775 ||||| |||||||||| ||||||||||||||| |||||| | | ||||| || | Sbjct 240 TTCGAAGCTCATATGAAGAACTTAGAAATCTTCAAGAACATCAAAAGTGAGG----CATT 185 Query 19776 -CGTGCTACGAAGTGGATGGCAAAAGCTTGGGGTGAACCTGAGTGGTGTAAAGGTTATGG 19834 ||||| | |||||||||| |||| ||||| || || || |||||||| |||||||| Sbjct 184 ACGTGCGTCACAGTGGATGGCTAAAGAGTGGGGCGAGCCAGAATGGTGTAAGGGTTATGG 125 Query 19835 TGTTAGGAACACTCATCTACTTGCTATTGCCCCAAACACATCTTCTGCTCTTATCTGTGG 19894 ||| | || || ||| |||| || |||| || || || ||| || | || ||| Sbjct 124 CGTTCGTAATACACATTTACTAGCACTTGCTCCTAATACTAGTTCAGCATTGATTTGTCA 65 Query 19895 GGGCGTCTCCCAAGGTATTGAGCCGGTGGTTGCAAATCTGTACAATCAACCAACCTCCGC 19954 | || ||||| ||||| || | || || || || |||||||| || || || Sbjct 64 AGCAGTTAGTCAAGGCATTGAACCTATTGTAGCTAACAGTTATAATCAACCTACATCAGC 5 Query 19955 AGG 19957 || Sbjct 4 TGG 2 >seq521152 Length=754 Score = 116 bits (128), Expect = 1e-21 Identities = 239/349 (68%), Gaps = 10/349 (3%) Strand=Plus/Plus Query 18684 AAAGAACTTCAAGCACAAGGTC-TAGTACCTGAATGGATGACTACTGGTGGATGGCAACT 18742 |||||||| ||| ||| |||| || | | | | ||| | |||||||||||||||||| | Sbjct 366 AAAGAACTACAACAACACGGTCATAATCCATCA-TGGGTAACTACTGGTGGATGGCAATT 424 Query 18743 CTTTAAAGAAAAATATTTGTGGGAGGCGAGAGGACTTAAAGACACATACGAACGTATCGC 18802 || ||||||| || || || | || | | ||| |||||||| || Sbjct 425 GTTCAAAGAAAGCTACTTACATGATTCAGTTGGTATGCGCGGTCAATATGAACGTATTGC 484 Query 18803 TAAAACTGCTGCACAACATACTGACGAC--CCTGACAAGTGGGCCGCTAAGTTTTTTGAT 18860 |||||| || |||| || || || || ||||| ||||| | || |||||| Sbjct 485 TAAAACCGCAGCACGTCACAC--ACCACATCCTGAAGCATGGGCAGTGCGCTTCTTTGAT 542 Query 18861 GTTCTTTGGCGCGGCTGGCTTGCTGCCTCTACTCC--TGTTCTTAGTAACATGGGCACAA 18918 || | ||| || ||| | ||| |||||| |||| | | |||||||| |||| Sbjct 543 GTAATGTGGAATGGTTGGTTAGCTTGTAGTACTCCAGTGTTATCA--AACATGGGTACAA 600 Query 18919 TCAAAGGTATGCCGGTAAGCTGCTCTGGTCAGTATATTGAGGACTCTATTGATGGATTCT 18978 |||||||||||| || || || ||||| ||| ||||| || ||| |||| |||| Sbjct 601 ACAAAGGTATGCCAGTTAGTTGTTCTGGCGCGTACATTGATGATAGTATCCATGGTTTCT 660 Query 18979 ACTCAGCCTACCACGAAACGGCTATGCTTACAAAGAATGGCTTCGGCAC 19027 | | || || || || ||||||||||||||||||||||| || || Sbjct 661 ATACTGCTAGACATGATACTGCTATGCTTACAAAGAATGGCTTTGGTAC 709 Score = 96.9 bits (106), Expect = 1e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 17840 CGTATTGTTGATATGATTTTTGAGAAGGGTGAAATGGAAGGCATCACTGCTGAACAAATG 17899 |||||| |||||||||| || || | ||||| ||| || |||||| ||||||||| Sbjct 69 CGTATTATTGATATGATCTTCGAACACGGTGATATGCCTGGTATCACTAAAGAACAAATG 128 Query 17900 AAAACCTTCGTTAAGTCTCGTGTCAACATCTGTCTTGCTCAGCTT-GGTATTGAACCTGT 17958 ||||| || || ||||||||||| || | ||| || | | || ||||| |||| | Sbjct 129 AAAACGTTTGTAAAGTCTCGTGTGAATTTGTGT-TTACAGAATTTAGGTATGTTACCTAT 187 Query 17959 CTTTGAAGTAAGTAACAATATTGTTGCAGAGTGGTTCTATGATGGTATCAATGGCGTCAT 18018 |||||| || ||||| |||| || ||||||||||| ||||| || Sbjct 188 ATTTGAAATATTCAACAACTCAATTGCTGATTGGTTCTATGACAACATCAACTCAGTACA 247 Query 18019 GTTCCATGACTTCTTTAGCGGCATTGGTAACAGTTACAATCGTTCCTGGGAT 18070 || || |||||||||| || || ||| ||||| || || ||||||| Sbjct 248 ATTACACGACTTCTTTACTGGTATCGGTTCAAGTTATAACCGCGACTGGGAT 299 >seq520451 Length=342 Score = 105 bits (116), Expect = 2e-18 Identities = 174/244 (71%), Gaps = 8/244 (3%) Strand=Plus/Plus Query 19293 GGTGATGTAGACGCTG-TACAACGCTTCCAGAGAGCAATGTATGTTAAGGCTATCACTGG 19351 |||||| |||| || |||| || ||||| | | ||| | || ||||| | ||||| Sbjct 103 GGTGATATAGATGCACATACA-CGTTTCCAACGTTCGATGAAAGTAAAGGCAGTAACTGG 161 Query 19352 TAAGGGTTATTTCTT--TAAGCCTGACACAGTGAACGCTATGAACCCACAGGTGTATAAA 19409 ||| ||||||| ||| ||| | |||| |||||| | | ||||| |||| ||| Sbjct 162 TAAAGGTTATTACTTACTAATC--GACAACGTGAACCGTTTATCACCACAAATGTACAAA 219 Query 19410 GACAGGGGGCTTGAA-GTTAAAGCCTCTAACCTTTGCACTGAGATTACATTGTTTAGTGA 19468 |||| ||| |||||| || ||||| |||||| | || | || || | ||||||||||| Sbjct 220 GACATGGG-CTTGAAAGTAAAAGCGTCTAACTTATGTATCGAAATCAACTTGTTTAGTGA 278 Query 19469 CGAAGACCATACCTTCACTTGTGTGCTCTCGTCTATGAATCTGGAGAAGTATGATGAATG 19528 |||||||| || || ||||| | |||||||| | | ||||| |||||||| Sbjct 279 TATCGACCATACGTTTACATGTGTATTGAGTTCTATGAACTTAGCTAAGTACGATGAATG 338 Query 19529 GAAA 19532 |||| Sbjct 339 GAAA 342 >seq76150 Length=1356 Score = 98.7 bits (108), Expect = 3e-16 Identities = 179/257 (70%), Gaps = 5/257 (2%) Strand=Plus/Plus Query 5779 GGCAACACTGTAGTATGTCGTACTTTGCTAAATGCAAACAGTGGTAAGGGTATTGTACTT 5838 ||||| ||||| || ||||||||| ||| | || ||| |||| | || ||||| || Sbjct 997 GGCAATACTGTCGTTTGTCGTACTAAGCTTACTGGTAACTCTGGTGATGGCATTGTTATT 1056 Query 5839 GTAGGGCCAGGTGATGATGAGCTTGTTGATGCACCTCTGTACACTAAGTATGTGCCCAAG 5898 | | || || |||||| | || |||||||| || || |||| || | || Sbjct 1057 GCAACAAAAG-TG--GATGAGTTAGTGGATGCACCACTATATACTATCTACAAGAAGAAA 1113 Query 5899 AAACAAGAGTGGCGAATTCATGTGTTCCGTGGTGAATGTG-TAGATATTCAAAGAAAAGC 5957 ||||||||| || |||||||||| ||| || || | | ||||| | ||||| Sbjct 1114 CAACAAGAGTACCGTGTTCATGTGTTTGATGGC-AAGGTAATCTCTGTTCAACGTAAAGC 1172 Query 5958 ACGTAAGAAAGATGTTCCTGATGACGAAGTGAATTGGAAGATTAGGAACATTGGTGGTGG 6017 |||||||| ||||| ||||| |||| || |||||| || | ||| | | ||||| Sbjct 1173 TCGTAAGAATGATGTAGAAAATGACAAAGTTAACTGGAAGGTTCGTAACCTAGACGGTGG 1232 Query 6018 TTTTATCTTTGCACGTA 6034 ||||||||||| |||| Sbjct 1233 CTTTATCTTTGCTCGTA 1249 >seq498376 Length=1043 Score = 84.2 bits (92), Expect = 7e-12 Identities = 174/259 (67%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 11023 ATGCATATTGGCAACGTAACTGGTCAGTCAAACGTATTGCTGAAGACCAGATAGTTAAGG 11082 |||| || ||| |||| |||||||| | | | ||| ||||| || ||||||||| Sbjct 407 ATGCCTACTGGAAACGAAACTGGTCTCTTACAGCTATAGCTGATGAGTGTATAGTTAAGA 466 Query 11083 TGTGCAATGGAATGAAGTGGTTGTTCAATCCAGTTAGTGGATTCTGGTACAGCTTACGTC 11142 | ||||||||||||| | | || || || || | | |||| |||| | Sbjct 467 ACTCACGTGGAATGAAGTGGCTATGGAACCCTGTAGCTGAACTGTGGTTGTTCTTAAGAG 526 Query 11143 ATGAAAAAGATAGGTTCTCAACACTAAACCAAGGTACGGGAGTTTACTGTTTCGATACAT 11202 ||| |||||||||||||| || ||||||| ||| || ||| || || |||| || Sbjct 527 CTGATAAAGATAGGTTCTCTACCTTAAACCAGTCTACTGGTACTTATTGCTTTGATAGAT 586 Query 11203 GGGTTAGGCACATCCGGGAGGAGCGGCCACAACTCACTGCGCAATTCCATGATGAAGTCG 11262 |||| |||| | | | || ||||| ||||| || |||||||||||||| Sbjct 587 GGGTATTCTACATAATGAAACGTAGACCTCAACTAACTGCACAGTTCCATGATGAAGTTA 646 Query 11263 TCCTATGTATTAGGAAGGG 11281 || || ||| |||||| Sbjct 647 TCTTAGAGCTTAAGAAGGG 665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157732713861324