Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq44246 230 2e-55 seq103378 113 4e-20 seq152719 89.7 5e-13 >seq44246 Length=4029 Score = 230 bits (254), Expect = 2e-55 Identities = 973/1512 (64%), Gaps = 51/1512 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||| ||| ||||| || | || || || || || | ||| ||| ||| Sbjct 1762 TTGACGATCTGGAACTCTCCTGACAGGACCCGGCGGGTGTAGATGTTGCTGGTGTAGGCC 1703 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || | |||||||| ||||||||||| || ||||| | || |||||||| |||| | Sbjct 1702 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGC 1643 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || | || ||||||||| ||| | ||||| ||| ||| ||||| Sbjct 1642 AGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCAC 1583 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || || ||| || ||||||||||||||||| | ||||||| |||| ||||| | Sbjct 1582 AGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGGGAG 1523 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG--GCGAGCTCGCAACTCGCCTCCAGAG 145355 ||| | | | | ||| |||| || | | || || ||||| || |||||||| | Sbjct 1522 CCTCGTACGTGTC-GTAGGGGCCC--AGCTCGGCGGCCAGTTCGCAGCTGGCCTCCAGGG 1466 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415 || || | || || ||||| || || |||| |||||| || || ||| || Sbjct 1465 CGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCCTCGGGGCTTTCAA 1406 Query 145416 ACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCC 145475 | || |||| ||| | || || ||||| || ||||| | || | ||||| |||| Sbjct 1405 AGGGGTAACGCATCAGGATGAAGGCGTCGGCCAGGCCCTGGACGCCGATACCGATCGGCC 1346 Query 145476 GATGTTTCATGTTG--CTCATC---CTCGCCGACTCGATAGGATATCGATTACGGTCGAT 145530 || | ||||| || ||| |||| || | ||| | ||| || || Sbjct 1345 TGTGGCGCTTGTTGGACTGATCGGCCTCGGGCACCGGGTAGAAG-----TTAATCTCTAT 1291 Query 145531 AATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAA 145590 || || |||| ||| ||| | || || || | | || || | |||||||| Sbjct 1290 GATCTTGTTCAGGTTCTTCACGATCACTTTGGTCACAGACTCCAGTTTCTTGAAGTCAAA 1231 Query 145591 ---CCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAAC 145647 ||| |||| ||| ||| | |||| ||||| || |||| |||||| || Sbjct 1230 AGTCCG---CTCGGGGGTGACGT-ACA--TGTTGAGAGCGATGGAGGCCAGATTACACAC 1177 Query 145648 TGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGAT 145707 || ||| ||| | | ||||| ||||| || | ||| | ||||| || ||||| Sbjct 1176 AGCGACCTCATCGCCACTGGAGTATTCAACGATTTCCGTGCAGAGGTTGCTGCACTTGAT 1117 Query 145708 GGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 ||||||||| || ||||| || || ||||||||||| ||||| ||||| ||||||||||| Sbjct 1116 GGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGG 1057 Query 145768 TCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGC---GCACGCAC 145824 ||| | |||| ||| | || |||| | |||| | ||||| || ||| Sbjct 1056 CGTGCCCGACTCCGTCTGGGACT---CGATGATGGCGTGCCACACCTGCTGAGCCTTCAC 1000 Query 145825 CTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACC 145884 | ||| | |||||||| || |||| ||||||||| ||||||| | || Sbjct 999 CACACGCTTGACCCGGCCCTCCCGCTCATATTGGGTGTAGAGCTTCTCAAACTCCTCCCC 940 Query 145885 GTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGC 145944 |||| ||| ||| ||||| | || | ||||||||||||| ||||| | |||| Sbjct 939 CCAGCACTCGTCCAGCCCGGGGCTCTCGCTGGGACACATCAGAGACCAGTCCTGGTTGCT 880 Query 145945 GTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCGCT 146002 | || | || ||| |||| || || | ||||| |||| | | || | || || Sbjct 879 CTCCACCCTCTTCATGAACAGGTCGGGGATCCACAAGCCGTAGAAGAGATCTCTGGCTCT 820 Query 146003 TTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGC 146062 ||| ||||| ||| |||| ||||| | || | | | ||| |||| Sbjct 819 CTGC--TCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCAAAGTGC 762 Query 146063 CACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACGTGA 146119 ||||| || | || | ||||| ||| || ||| ||||| |||||||| || | Sbjct 761 CACGGCTCCAGGTACATGGCGAAGGCGCCGGGTCGCTTGTTGCCGCCCTGGTCGACATAG 702 Query 146120 CGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTA 146179 ||| | ||||||| |||| | || |||||| | | ||| ||| |||||| || Sbjct 701 CGTGCTGTGTTGTTGTAGACCCTCAGCATGGGGACCAGCCCGTTGGAGTTGCCGTTGGTG 642 Query 146180 GAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC-GCC 146238 | || | | ||| ||| || | ||| || ||| |||| || || ||| Sbjct 641 CCGGCGATGTAGCTCCCGGTGGATCGGATGCAGCTGACGGCCACACCGATTCCTCCTGCC 582 Query 146239 GTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG-- 146296 | ||||||| || || || | ||||| ||||||||||| || ||||| ||| Sbjct 581 G-ACTTGGAGATGAGTGCACACTGCTTCAGCGTGTCGTAGATGCCCTCGATGCTGTCGTC 523 Query 146297 CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGG--CGTCCCCGCCGAGA 146354 |||| ||| |||||| ||||| | | | ||| | | ||| || || || || Sbjct 522 CTTC--ATGGTGAGCAGGAAGCAGCTGGAGAGCTGAGGC--CGGTTGGTTCCTGCGTTGA 467 Query 146355 ACAACGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGATA 146413 | | ||| ||| ||||| || || || || || | | || || || ||||| Sbjct 466 AGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCCG-AGAGCAGGTTGTAGGTCTCGATG 408 Query 146414 GCGTCTTGAATGT-CGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGG 146472 ||| | | || | |||| || || || | | || | |||||||||||| || || Sbjct 407 GCGGCGTCGATATCCGTC-TTGTGGATTCCGACCGACACCCTCATGAGCATGTGCTGCGG 349 Query 146473 CCGCTCCGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATCC 146532 |||||||||||||| || ||||| | || ||| |||||| || ||| | || Sbjct 348 CCGCTCCGCCACTTTGCCGTTGATCTTCAGCAGGTAGGATCGCTCCAGCGTCTTGAAGCC 289 Query 146533 GAAAAATTTGTA 146544 ||| || ||||| Sbjct 288 GAAGAAGTTGTA 277 >seq103378 Length=1867 Score = 113 bits (124), Expect = 4e-20 Identities = 85/100 (85%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | || ||||| | ||||| |||||| ||||||||||||||||||| ||||| | Sbjct 1784 TGTACTCCACTATCTCTGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGT 1725 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 | || |||| |||||| ||||||||||||||||||||||| Sbjct 1724 TGCTCTTCCCGTTGCAGGCGTCCTTGTAGAGCATGTACGG 1685 >seq152719 Length=2073 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | ||| |||||||| | ||| ||||| || || || || ||||| ||||| | Sbjct 500 CCTCCTCTCAAGCGCAGCACAAGATGGATGGTGGATTCTTTCTGGATGTTATAATCTGAC 559 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 |||||||| || || ||||||||||| || |||| | | |||||| || |||||| Sbjct 560 ATGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGG 619 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||| || || | | ||| | || ||| ||| || | Sbjct 620 ATGCCCTCCTTATCCTGGATCTTAGCTTTTACATTCTCAATGGTGTCGCTGGGTTCAACC 679 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || ||||| || || || || || || |||||||| Sbjct 680 TCCAGAGTGATAGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 726 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || ||||| | ||| | ||| ||||| || || |||||||| ||| | ||||| | Sbjct 56 CGGAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCG 115 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||||||||| || |||| | | |||||| || |||||||| || || || Sbjct 116 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTA 175 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || |||| | ||| | || ||| ||| || | || | || | | Sbjct 176 TCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATG 235 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | ||||| || || || || || || |||||||| Sbjct 236 GACTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468912254119680