Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1160 131 1e-25 seq17837 125 5e-24 seq12925 95.1 8e-15 seq392608 87.8 1e-12 >seq1160 Length=1464 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 1166 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 1225 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 1226 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 1260 >seq17837 Length=4639 Score = 125 bits (138), Expect = 5e-24 Identities = 131/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 ||||||| || | ||| || || ||||| ||||||||||| ||||||||| |||||||| Sbjct 3514 ACCCGACCAAGTTTTTTGGTTGTGAACTCGGCGCTCAGACCCAGTTTGATTCCAAAAACG 3455 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | || |||||||| |||||||| || | | |||| |||||||| | ||||| || | Sbjct 3454 ACCGTTTCATCGTCAACGGATCCCACGAGGCGAACAAGTTGCAGGACATGCTTGATGGGT 3395 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || | || ||||||||||| || ||||| ||||| || || || || Sbjct 3394 TCATCAGAAAATTTGTGCTGTGCACCGAGTGCGAAAACCCTGAAACTGATCT 3343 >seq12925 Length=554 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| Sbjct 445 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCGACTATCGGTCTCGT 386 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 385 GCCGGTATTTAGCCTTA 369 >seq392608 Length=818 Score = 87.8 bits (96), Expect = 1e-12 Identities = 70/84 (83%), Gaps = 3/84 (4%) Strand=Plus/Minus Query 19943 ATTTCTCTC---TCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCG 19999 ||||| ||| | |||| |||||||||| ||||||||||||||||| |||| |||||| Sbjct 148 ATTTCACTCCGTTATTCACGGTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCG 89 Query 20000 GTCTCGCGGTAATATTTAGCCTTA 20023 ||||| | | | |||||||||||| Sbjct 88 GTCTCTCAGGAGTATTTAGCCTTA 65 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 332802012026162