Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq1160 131 1e-25
seq17837 125 5e-24
seq12925 95.1 8e-15
seq392608 87.8 1e-12
>seq1160
Length=1464
Score = 131 bits (144), Expect = 1e-25
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 1166 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 1225
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 1226 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 1260
>seq17837
Length=4639
Score = 125 bits (138), Expect = 5e-24
Identities = 131/172 (76%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378
||||||| || | ||| || || ||||| ||||||||||| ||||||||| ||||||||
Sbjct 3514 ACCCGACCAAGTTTTTTGGTTGTGAACTCGGCGCTCAGACCCAGTTTGATTCCAAAAACG 3455
Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438
| || |||||||| |||||||| || | | |||| |||||||| | ||||| || |
Sbjct 3454 ACCGTTTCATCGTCAACGGATCCCACGAGGCGAACAAGTTGCAGGACATGCTTGATGGGT 3395
Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490
| || | || ||||||||||| || ||||| ||||| || || || ||
Sbjct 3394 TCATCAGAAAATTTGTGCTGTGCACCGAGTGCGAAAACCCTGAAACTGATCT 3343
>seq12925
Length=554
Score = 95.1 bits (104), Expect = 8e-15
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct 445 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCGACTATCGGTCTCGT 386
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 385 GCCGGTATTTAGCCTTA 369
>seq392608
Length=818
Score = 87.8 bits (96), Expect = 1e-12
Identities = 70/84 (83%), Gaps = 3/84 (4%)
Strand=Plus/Minus
Query 19943 ATTTCTCTC---TCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCG 19999
||||| ||| | |||| |||||||||| ||||||||||||||||| |||| ||||||
Sbjct 148 ATTTCACTCCGTTATTCACGGTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCG 89
Query 20000 GTCTCGCGGTAATATTTAGCCTTA 20023
||||| | | | ||||||||||||
Sbjct 88 GTCTCTCAGGAGTATTTAGCCTTA 65
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 332802012026162
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |