Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq44246 392 4e-104 seq496362 168 8e-37 seq388653 111 2e-19 seq103378 96.9 4e-15 >seq44246 Length=4029 Score = 392 bits (434), Expect = 4e-104 Identities = 1157/1779 (65%), Gaps = 12/1779 (1%) Strand=Plus/Minus Query 62174 AGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTA 62233 || ||||| || || || | || || ||||| |||| || | || ||||| || || Sbjct 1774 AGCAGATGGGGGTTGACGATCTGGAACTCTCCTGACAGGACCCGGCGGGTGTAGATGTTG 1715 Query 62234 CTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 62293 ||||| || | || | ||||| || || |||| || || || || || || || ||| Sbjct 1714 CTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGC 1655 Query 62294 ATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGT 62353 || || |||| || | || || || | |||| | ||| || || || || | Sbjct 1654 ATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGC 1595 Query 62354 TCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGT 62411 | ||| | ||| || || | || | | | || || || || | Sbjct 1594 TTCCAGTCCCACAGGTCGGTGGG--CGTCTTCTCCCACATGTCGTACTGGAGGATGCCCT 1537 Query 62412 TACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAAC 62471 | ||| || || ||| | || || ||||| || || || | || ||||| || | Sbjct 1536 TGCTGACGGGGGAGCCT-CGTACGTGTCGTAGGGGCCCAGCTCGGCGGCCAGTTCGCAGC 1478 Query 62472 TCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTT 62531 | ||||| | || |||| || ||||| || ||||||| | || || || || | Sbjct 1477 TGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCCT 1418 Query 62532 CCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAA 62591 | |||| ||||| || ||| | || || || ||||| || | || || || || | Sbjct 1417 CGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCAGGCCCTGGACGCCGA 1358 Query 62592 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62651 ||||||| || || || | ||| || || || || || || | || || | |||| Sbjct 1357 TACCGATCGGCCTGTGGCGCTTGTTGGACTGATCGGCCTCGGGCACCGGGTAGAAGTTAA 1298 Query 62652 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62711 | ||||| || || || || || | || || |||||| |||| || |||||| | Sbjct 1297 TCTCTATGATCTTGTTCAGGTTCTTCACGATCACTTTGGTCACAGACTCCAGTTTCTTGA 1238 Query 62712 AATCAAATCGCCCATCTA---TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAA 62768 | ||||| || || | || ||||||| | || | || ||||||||||| | Sbjct 1237 AGTCAAAAGTCCGCTCGGGGGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACACA 1178 Query 62769 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 62828 | || ||||||| || | |||| | || || ||||| || || || ||||||| Sbjct 1177 CAGCGACCTCATCGCCACTGGAGTATTCAACGATTTCCGTGCAGAGGTTGCTGCACTTGA 1118 Query 62829 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 62888 ||||||| | || || || || ||||| |||| || || || || || || ||| | | Sbjct 1117 TGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACG 1058 Query 62889 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTA 62948 | || || | || |||| || || || || || | ||| || ||||||| | | Sbjct 1057 GCGTGCCCGACTCCGTCTGGGACTCGATGATGGCGTGCCACACCTGCTGAGCCTTCACCA 998 Query 62949 TAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCC 63008 | ||| | || | || ||| | || || | || ||||| || |||| Sbjct 997 CACGCTTGACCCGGCCCTCCCGCTCATATTGGGTGTAGAGCTTCTCAAACTCCTCCCCCC 938 Query 63009 AAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCT 63068 | | |||||| || || | || |||||||||| ||||| || || || Sbjct 937 AGCACTCGTCCAGCCCGGGGCTCTCGCTGGGACACATCAGAGACCAGTCCTGGTTGCTCT 878 Query 63069 TCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTA 63127 ||| | ||||| || || || || ||||| | ||| || || |||||||||| ||| Sbjct 877 CCACCCTCTTCATGAACAGGTCGGGGATCCACA-AGCCGTAGAAGAGATCTCTGGCTCTC 819 Query 63128 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 63187 || ||||| || || || ||||| || || || ||||| | | | ||| | |||||| Sbjct 818 TGCTCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCAAAGTGCCAC 759 Query 63188 GGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 63247 || |||| ||| ||||| | | || || || ||||| || ||||| || | || | Sbjct 758 GGCTCCAGGTACATGGCGAAGGCGCCGGGTCGCTTGTTGCCGCCCTGGTCGACATAGCGT 699 Query 63248 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCT 63307 || ||||| || || || |||| ||| || | | || ||||| | || ||||| || Sbjct 698 GCTGTGTTGTTGTAGACCCTCAGCATGGGGACCAGCCCGTTGGAGTTGCCGTTGGTGCCG 639 Query 63308 GAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 63367 | ||| ||||| || ||| || || || | | | ||| ||||| |||||| Sbjct 638 GCGATGTAGCTCCCGGTGGATCGGATGCAGCTGACGGCCACACCGATTCCTCCTGCCGAC 579 Query 63368 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 63427 || ||||| | ||| || | || | ||| || ||||||||||| || || || ||| || Sbjct 578 TTGGAGATGAGTGCACACTGCTTCAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTC 519 Query 63428 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 63487 ||| | || || || ||||| || | || | || | ||||| || || || | || Sbjct 518 ATGGTGAGCAGGAAGCAGCTGGAGAGCTGAGGCCGGTTGGTTCCTGCGTTGAAGAGCGTG 459 Query 63488 GGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT 63547 || || ||||| || ||||| || || || || || ||||| ||||| || || | ||| Sbjct 458 GGGGAGGCGTGGGTGAACCACTTCTCCGAGAGCAGGTTGTAGGTCTCGATGGCGGCGTCG 399 Query 63548 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACG 63607 |||||| | || ||||| || | || | ||| | ||||||||| || | || | Sbjct 398 ATATCCGTCTTGTGGATTCCGACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCCGCC 339 Query 63608 ATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 63667 | ||| ||| || |||| || ||||||| |||| || || || || || ||||| Sbjct 338 ACTTTGCCGTTGATCTTCAGCAGGTAGGATCGCTCCAGCGTCTTGAAGCCGAAGAAGTTG 279 Query 63668 TATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACT 63727 || || || |||| ||| | || || |||||||||| ||||| | | ||| Sbjct 278 TAGGAGAAATCTCTGTCGAAGATGATGGCCGAGTTGAGGCGGTCCTTGTGGGCGAGAACG 219 Query 63728 ACATCCATGGTAATACTT-GAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATA 63786 | || | ||| | ||| || || || || | || | || ||| |||| || Sbjct 218 ATGTCGAGGGT-CTCCTTGGAGATCATGGGGGAGTGGCGTCTGTTCAGAGGGTTGATGTA 160 Query 63787 GTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGA 63846 | || | | ||||||||||| ||||| || | || || || || ||||| || || || Sbjct 159 GCTGTACAGGTCCTCCATCACCTCACTGAAAACCTTCTTCGTCTCCTTGTGCAGGTTGGA 100 Query 63847 TACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGC 63906 ||||| || | ||||| || ||||| || ||||| |||| || || ||||| | Sbjct 99 GACGGCGATCCGGGCGGCGAGGATGGCGTAGTCCGGGTGTTTGGTGGTGAGGGTGGCGGT 40 Query 63907 TATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTAC 63945 || || || ||||| ||||||| || || || || || Sbjct 39 GATCTCTGCAGCCAGGGTGTCCAGCTCCACGGTGGTGAC 1 >seq496362 Length=882 Score = 168 bits (186), Expect = 8e-37 Identities = 404/597 (68%), Gaps = 22/597 (4%) Strand=Plus/Minus Query 32663 TGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 32722 ||||||||| ||||| | ||| ||||| | | ||| |||||||| || || || | ||| Sbjct 631 TGCGAAATCACAGTGAACACCTTCGTCACGAGAAATCAATTCGTTTGAGAATGTCAATCC 572 Query 32723 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAAT 32782 ||||| | || || ||||| | ||| || ||||| ||| | || || |||||||| Sbjct 571 TGGCATCAAACCTCGTTTTTTCAACCAGAAAATGGAACAAAAAGCACCTGAGAAGAAAAT 512 Query 32783 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCA 32842 |||||| ||||| ||||| ||||| | || |||| | || | ||| || ||||| Sbjct 511 TCCTTCCACTGCTGCAAAAGCAATCAATCGCTCTGCGAAA--GAATCTG-AATCAATCCA 455 Query 32843 CTTTTGA---GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 32899 |||| ||||| || || |||||||| | | ||| | |||| || || || Sbjct 454 ---TTGAATTGCCCAGTCCGCTTTCTTTTTGATAGCAGGAAAAACTTCTAATGCGTTGAA 398 Query 32900 GAGATAGtttttttCATTACT--ATCTTTAACATATGTATCAATCAAAAGACTATACATT 32957 | || | ||| || | || ||||| ||||| || || || || | |||| || Sbjct 397 TAAATCGGCTTTCTC--TGCTTCGTCTTTTACATAAGTGTCGATTAACAAGGAATACGTT 340 Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG-AAGCATCTAGCCTCGGTAAT 33016 || ||||| ||||| || ||||| || || ||| ||| || | || || | | Sbjct 339 TCGCTGTGAATATTTTCCATCATGATTTGGAAACCATAGAAAGAATTTCGCTTCAGCATA 280 Query 33017 CTGTACTTC-TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 33075 || ||||| | |||||| | ||| || | ||||||||| || |||||||| || | Sbjct 279 TTGCACTTCATTTACAAAGT-TTTCAGCAAGATTTTCATTTACAATTCCGTCTGAAGCGG 221 Query 33076 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT--AGT--TTATTC 33131 | ||||| || || | ||||| ||||| |||| ||||||| | || | | |||||| Sbjct 220 CGAAAAATGCTAAAATGTGTTTGATAAAGTATTGTTCGTCT-TTATTCAACTTGTTATTC 162 Query 33132 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 || || || | ||||| || | ||| | |||||| | ||||| || | ||| Sbjct 161 CAGTCGTTTAAATCTTGTGACAAATCAATTTCTTCGGCAGTCCAGAA-ACTCGCTCCATG 103 Query 33192 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAttt 33248 |||||| | | ||| || || || | | || |||||||| ||||| | |||| Sbjct 102 GATTTATAAAATTCCCAAATATCTTGGTGCTTGATCGGAAAAATGACAAAACGATTT 46 >seq388653 Length=382 Score = 111 bits (122), Expect = 2e-19 Identities = 264/389 (68%), Gaps = 14/389 (4%) Strand=Plus/Minus Query 62763 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA-AAGATT-ACT 62820 |||| || ||||| |||| || | | |||| || ||||| || || ||| || || Sbjct 382 TACACACTGCTACTTCATCAGGAGAGGTGTATTCCATGATCTCTGTACACAAGTTTGACG 323 Query 62821 ACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 62880 | || || ||||||||||| | ||| || || ||| |||||| ||||| | Sbjct 322 A-ACGA-ATAGTTCCTAAATTCTTTTGGTTTGATTTACGGTTTGCCGCATCTTTATATAA 265 Query 62881 AATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC-CAGACGACTC--G 62937 || | ||||| ||||| || || |||||||||| ||| |||| | || | || | Sbjct 264 CATATACGGAGTTCCAGTCTCGATTTGAGATTCTAGAAT---TTTCTCCCACAATTCATG 208 Query 62938 AGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGT--ATACAATCGTTCG 62995 || || ||| | ||| || || || ||||| ||| | ||| ||| ||| Sbjct 207 TGCTTTAATTGTT--TTTCTACCTTTTCCAGCTTTCTCGTAGCTTTCATATAATGCTTCA 150 Query 62996 AACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCAC 63055 ||||| || || |||||| || || |||||||||||| | |||||||| || | ||| Sbjct 149 AACTCTTCACCATAAACATCGTACAATCCAGGACATTCGTTAGGACACATTAAAGTCCAG 90 Query 63056 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA 63115 | |||||| || | || |||||||| || | ||||| | |||| | || | |||| | Sbjct 89 TTTCCGTCTTCTTGTACACGTTTCATGAATAAATCAGAAGTCCACATGGCAAAGAATAAA 30 Query 63116 TCTCTGGTTCTATGTTCCTCGTTTCCTGT 63144 ||||| | | ||| || |||||||| Sbjct 29 TCTCTTGCACGCATTTCTTCTTTTCCTGT 1 >seq103378 Length=1867 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || ||||| || | ||||| || ||||| || ||||| ||||| || || | ||| Sbjct 579 GTGCCGGCATTGAACAGTGTAGGTGAGGCGTGGGTGAACCACTTTTCCGACAGCAAGTTG 520 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 ||||||||||| |||| || || || | || ||||| || || || || | ||||| | Sbjct 519 TACGTCTCAATGGCTGCATCGATGTCTCTTTTGTGAATCCCGACGGCCACTCTCATTAGC 460 Query 63587 ATGTGCTGAGGTCTTTCA 63604 |||||||| ||||| ||| Sbjct 459 ATGTGCTGGGGTCTCTCA 442 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 62800 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 62859 |||||| ||||| ||||| || | ||||||||||| | ||| || || || ||||| Sbjct 1774 TATCTCTGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGTTGCTCTTCCC 1715 Query 62860 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 62919 ||| || || ||||| || || ||| | || ||||| |||||| |||| || || || || Sbjct 1714 GTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTTTCAGTCTGTGACTCGATGAT 1655 Query 62920 CGCTTTCCA 62928 || | ||| Sbjct 1654 GGCGTACCA 1646 Score = 82.4 bits (90), Expect = 1e-10 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 63070 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63129 |||||||||||| ||||| || || ||||| || || | || || ||||||| || || Sbjct 1333 CACTCGTTTCATGAAGAGGTCTGGGATCCACAGGGCGAAGAACAGGTCTCTGGCCCTCTG 1274 Query 63130 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 ||||| || ||||| ||||| || | || | |||| | | | || |||||||||| Sbjct 1273 CTCCTCTTTACCTGTGTTCTTCTTCATCTCTAAGAACTCAAACACGTCCAAATGCCACGG 1214 Query 63190 TTCCAAGTATATGGC 63204 |||| ||| | ||| Sbjct 1213 CTCCAGGTACACGGC 1199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629469813959200