Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_008515.1
Length=165890
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 176 5e-39
seq506238 138 1e-27
seq487923 114 1e-20
seq509673 105 7e-18
seq351952 100 3e-16
seq326422 89.7 5e-13
>seq449735
Length=3187
Score = 176 bits (194), Expect = 5e-39
Identities = 492/742 (66%), Gaps = 25/742 (3%)
Strand=Plus/Minus
Query 138466 TTTGTTGGAATAGCAATTTCACAGCACAAGTTACTCTGACGAATAGGTGCCTTTTCACGA 138525
|| ||||| | |||||||| | || || ||| || |||||||||||| || | |
Sbjct 755 TTAGTTGGTAATGCAATTTCTAAACATAAATTAGATTGGCGAATAGGTGCCACTTTAGCA 696
Query 138526 ATAAACGGAGTATAGTTATTCGTATTATCAATGAACTGCACATAAATCCTTGCTGTTCCT 138585
|| ||||| | | |||| | |||| | || | ||||| | | || | |
Sbjct 695 ATGAACGGGCTGTGCGTATTACAGTGGTCAACGTTTTGTAAGTAAATACGACCGGTACTT 636
Query 138586 GAACGTTCAGTCATGAGCAA---TTCA-AATAGTTCACGGGCTTTAATACGCTTTTTGCG 138641
| |||||| || |||| || | || |||||| |||||||| || ||||| ||
Sbjct 635 GCACGTTCT----TGCGCAAACATTGAGAACAGTTCAATAGCTTTAATGCGTTTTTTACG 580
Query 138642 AAT--ATTAGGGTCTTTTTCTGCTGCTTCGTATAATTCACGG-AAACG-GTCTTGGTCTT 138697
||| ||| | |||| ||| | | | |||| | || |||| |||||||||||
Sbjct 579 AATTGATTCG--TCTTGTTCGTATTTTAC--ATAAAGCGCGTCAAACTCGTCTTGGTCTT 524
Query 138698 TAAAATAAGAATAATAAAGCTCGCCACCCATTTCATGCGGACTGAACAAAGTAATATAAT 138757
|||| | | || ||||| ||| || ||| || || ||||| ||||| || |
Sbjct 523 CAAAAAATGCATCGTAAAG---GCCTGGCACATCAGAGGGGCTAAACAAGGTAATGTAGT 467
Query 138758 CGTTCTTTCCGAATCGTTCCATCATCAAATCATTCAGTTGAACACCATAATCCATATGAC 138817
||| || || || ||| | | ||| | || || || ||||| | |||||
Sbjct 466 CGTCTTTAATTAAACGCGAGTACATTAGTTTATTAAACTGTACGCCGTAATCTAAATGAC 407
Query 138818 GAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCA 138877
| | |||||| || || || || ||||||||| | || | || ||||| ||||| |
Sbjct 406 GCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAGTACTAACAGGTTTTCTACTTCTA 347
Query 138878 AATGCCAAATAGGATA--ATAAGCAGTAGCAGCGCCGCCACGAATTCCACCCTGTGAGCA 138935
||||||||| || || | ||| || || ||||||||||| | || || || || ||
Sbjct 346 AATGCCAAAGCGGGTAGAACAAG--GTTGCTGCGCCGCCACGTACACCGCCTTGCGAACA 289
Query 138936 TGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAATAACACCAGTATGGCGTACTTC 138995
|||||| || || ||||| || || ||||||||||| ||| |||||| ||||
Sbjct 288 GCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAATACAACCCGTATGGTACGCTTC 229
Query 138996 ACCCATGCCAATCTTAGAACCTTCGGCACGAATCATACCAACGTTAATACCAATTCCAGC 139055
|| ||| ||| | ||| |||||||| ||| ||||||| ||||| || ||
Sbjct 228 GCCATTGCGAATGTGGCTACCCAGTGCACGAATGCGACCTGCGTTAATGCCAATGCCGGC 169
Query 139056 GCGTTTAGAGATATATTCAACAATTGAAGCGGAAGCCTTATTGATAGACTTCAATG-AAT 139114
|||| || | |||| |||||||| || || | || || || |||| | |
Sbjct 168 ACGTTGCGATACGTATTTAACAATTGCAGACGAGGTGGCGTTAATTGA-ATCAAGGCTGT 110
Query 139115 CTCCTGCCTCAATAACAACACATGAACTAAACTGTCGAGTTGGAGTACGACAACCAGCCA 139174
| || ||| || | ||||| || |||||||| || ||||| |||||| ||| ||||
Sbjct 109 CGCCACACTCTATTAATACACACGAGCTAAACTGGCGTGTTGGCGTACGAACACCTGCCA 50
Query 139175 TAATAGGAGTTGGCAATGAAAT 139196
|||| || || || | ||||||
Sbjct 49 TAATTGGCGTAGGTAGTGAAAT 28
>seq506238
Length=275
Score = 138 bits (152), Expect = 1e-27
Identities = 141/184 (77%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 60615 ATTACAAACTCTCGGTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 60674
||||||| | || || || ||||| | | ||||| |||| ||||| || || | |
Sbjct 38 ATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATG 97
Query 60675 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 60734
||||||| || ||||| ||||| |||||||| || || | || ||||||||||| || |
Sbjct 98 AGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGT 157
Query 60735 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 60794
| ||||| |||||||||| ||||||||||| | || || ||||| | ||||||||||
Sbjct 158 GTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCAC 217
Query 60795 CTTC 60798
||||
Sbjct 218 CTTC 221
>seq487923
Length=1072
Score = 114 bits (126), Expect = 1e-20
Identities = 288/429 (67%), Gaps = 23/429 (5%)
Strand=Plus/Minus
Query 23025 ATACTAATTTATCTAATACGTATTTTTGCCATGCATAATCATTACGGAATCCGAAGACCA 23084
||| |||||||| |||| || || |||||||| ||||||||| |||||||| ||
Sbjct 528 ATAGTAATTTAT---ATACATACTTATGCCATGCTAAATCATTACCAAATCCGAATACTG 472
Query 23085 CGTCATTTGAGCGCATGTTAACAACCGCATTGATT---TTCTTGTCACGAATCAGATACT 23141
||||| ||||||| || |||| || |||| || || |||||||| | |||||
Sbjct 471 CGTCACATGAGCGCTGATTGACAAT---ATAGATTAATTTATTATCACGAATAA-ATACT 416
Query 23142 -GTACGGTATTCGTACACATGAAATCTGACATGCCATCTTTATTGTAGTCAAACTGCATA 23200
| || |||| ||||| || ||||||||||| ||| |||| | ||| || |||
Sbjct 415 TGAACATTATTAGTACAAATAAAATCTGACATTTCATTAGTATTCCATTCACTTTGAATA 356
Query 23201 GATGGACGAGTATAAATCATGATACCACGTCGAGAATCAGGATTTTGACCAAGTTCAGCT 23260
|| || | |||||||||||| || | || | || || || | | || |||
Sbjct 355 GAAGGTCTAGTATAAATCATAATTGCTTTACGTGTATTTTTATCTTTAAGTAATT--GCT 298
Query 23261 AA---ACACATGTCATATTGAGCATAGTTATCTTCTGACCAGATAGCCCAACCATAATTC 23317
| || | | |||||||| || ||| | | | ||| ||||||||||||
Sbjct 297 CACGCGCAGACG-CATATTGATAATTATTAGCAGCACTAAAAATACACCAACCATAATTT 239
Query 23318 GAGTTAATTTCACCTTTAGAAGATGCTACCTGCTGCCAAATCTTCGG---TGTTTCACCT 23374
|||||||||| ||||| | || ||| | | ||||||||| || | | ||||
Sbjct 238 GAGTTAATTTTACCTTCTGTGCTTGATACATCTTCCCAAATCTTTGGAATAGGTGCACC- 180
Query 23375 GGAATATCTTTAACAAACAGACTTTGAGACTTATACCATTCAAGTTCACGCTGAATGTAT 23434
|||||||| ||||| || |||||| ||||||| | ||| | |||| |||
Sbjct 179 --CATATCTTTTACAAATAGTGATTGAGAACGATACCATAATAATTCTTTCCGAATATAT 122
Query 23435 TCATCATTA 23443
|| | ||||
Sbjct 121 TCTTTATTA 113
>seq509673
Length=441
Score = 105 bits (116), Expect = 7e-18
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 138796 TGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 138855
|| || || |||||||||||||| | ||||| ||||| ||||| |||||||||||
Sbjct 228 TGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATTTTTCAGT 287
Query 138856 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 138915
|| | | |||||||| |||||||| | || ||| | || || || ||||||
Sbjct 288 ACCAATAATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGCACCGCCA 347
Query 138916 CGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAATA 138975
|| | || || |||||||| ||||||||||||| || || |||| | || || |||
Sbjct 348 CGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAATGGGATA 407
Query 138976 ACACCAGTATG 138986
||| |||||
Sbjct 408 CAACCCGTATG 418
>seq351952
Length=416
Score = 100 bits (110), Expect = 3e-16
Identities = 126/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 60629 GTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 60688
|| |||||||| | ||| || || ||| ||||| | ||| | |||||||| || |||
Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTACT 93
Query 60689 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 60748
|| ||||| |||||||| || || | || ||||| || || |||| | | ||||||
Sbjct 94 GCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATCC 153
Query 60749 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 60801
| ||||||| || || |||||||| | ||||||||||||||||||
Sbjct 154 AATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCAAT 206
>seq326422
Length=2068
Score = 89.7 bits (98), Expect = 5e-13
Identities = 91/115 (79%), Gaps = 4/115 (3%)
Strand=Plus/Plus
Query 68555 GCGCTCTACCAAACTGAGCTACAC--GGAGTAAATTAAATTGGAGCGGATAATGAGAATC 68612
|||||||||||| |||||||| | | | | |||| |||||||| | | |||||
Sbjct 291 GCGCTCTACCAA-CTGAGCTATATCAGCATCACCATAAACTGGAGCGGGCAGCGGGAATC 349
Query 68613 GAACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GCCATTATACGATATCCGC 68666
|||| | ||||||||| ||||||| |||||||||| ||||||||||||| ||||
Sbjct 350 GAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 527233819732000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |