Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq152719 147 2e-30 seq152718 114 1e-20 seq6427 104 2e-17 seq59938 82.4 6e-11 >seq152719 Length=2073 Score = 147 bits (162), Expect = 2e-30 Identities = 176/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 ||| |||||||| || ||||| || || | || ||||| || ||||||| || || || Sbjct 733 TGTCAAGATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACTATCACTCTGGAGGTTGA 674 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 | ||| ||| ||| | || || | ||| || || || || |||||||| || || || Sbjct 673 ACCCAGCGACACCATTGAGAATGTAAAAGCTAAGATCCAGGATAAGGAGGGCATCCCTCC 614 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 ||||| || | || || ||||||||||| ||| | || ||| |||||| | || || Sbjct 613 TGATCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCATGTCAGA 554 Query 22392 TTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTTC 22450 ||| ||||| || |||||||||||||| ||| | || |||| ||| | |||||| ||| Sbjct 553 TTATAACATCCAGAAAGAATCCACCATCCATCTTGTGCTGCGCTTGAGAGGAGGTATTC 495 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || ||||| | ||||||| || || ||| ||| | Sbjct 270 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGTCCATCACTCTGGAGGTTGAACCCAGC 211 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| || || || || |||||||| || || || ||||| Sbjct 210 GACACCATTGAGAATGTCAAAGCTAAGATCCAGGATAAGGAGGGCATCCCTCCTGATCAG 151 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| | || || |||||| ||||||| |||||| Sbjct 150 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCCGACTACAAC 91 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| |||||| | ||| | || | || || | |||||| Sbjct 90 ATCCAGAAAGAGTCCACCCTCCATCTTGTGCTCCGCCTGAGAGGAGGT 43 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 || || || ||||| || || | || || || || ||||||| | || ||| ||| | Sbjct 498 ATTCAGATCTTTGTGAAGACCCTCACAGGCAAGACTATCACTCTGGTGGTTGAACCCAAC 439 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| || || || || ||||| || || || || || || Sbjct 438 GACACCATTGAGAATGTCAAAGCTAAGATCCAGGATAAGGAAGGCATCCCTCCAGACCAG 379 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| | || || |||||| ||||||| |||||| Sbjct 378 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCCGACTACAAC 319 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| ||| ||| ||| | || ||||| || | |||||| Sbjct 318 ATCCAGAAAGAGTCCTGCATTCATCTGGTCTTGCGGCTGAGAGGAGGT 271 >seq152718 Length=3078 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || ||||| || ||||||| || || ||| ||| | Sbjct 2373 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACTCTGGAGGTTGAACCCAGC 2314 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| || ||||| || ||||| || || || | || || Sbjct 2313 GACACCATTGAGAATGTCAAAGTTAAGATTCAGGATAAGGAAGGCATCCCTTCTGAACAG 2254 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 | | || || ||||||||||| ||| | || ||| ||||| ||||||| |||| | Sbjct 2253 TACAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACTCTCTCCGACTACAGC 2194 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| |||||| | ||| | || ||||| || | ||||| Sbjct 2193 ATCCAGAAAGAGTCCACCCTCCATCTTGTCTTGCGGCTGAGAAGAGGT 2146 >seq6427 Length=3314 Score = 104 bits (114), Expect = 2e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| || || || || ||| ||| ||| | || || |||| Sbjct 3310 ACGGGCAAGACCATCACCCTGGAGGTTGAGCCCAGCGACACCATCGAAAATGTCAAGGCC 3251 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||| || ||||| || ||||| || | || || ||||||||||| Sbjct 3250 AAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAGAGGCTGATCTTTGCCGGCAAG 3191 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | || ||| ||||||| ||||||| |||||||| || || || |||||| | ||| Sbjct 3190 CAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAT 3131 >seq59938 Length=2926 Score = 82.4 bits (90), Expect = 6e-11 Identities = 123/174 (71%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| || || || || ||| ||| ||| | || || |||| Sbjct 2912 ACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGCGACACCATTGAAAATGTCAAGGCC 2853 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||| || ||||| || ||||| || | || || ||||||||||| Sbjct 2852 AAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAGAGGCTGATCTTTGCCGGCAAG 2793 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 || | || ||| ||||||| |||| |||||||| || || || |||||| Sbjct 2792 CATTCGGAAGATGGCCGCACCCTCTC--TATACAACATCCAGAAGGAGTCCACC 2741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417039828676630