Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq238054 95.1 2e-14 seq192246 95.1 2e-14 seq138847 95.1 2e-14 seq253432 93.3 9e-14 seq41456 93.3 9e-14 seq140745 91.5 3e-13 seq113143 91.5 3e-13 seq444848 89.7 1e-12 seq238055 89.7 1e-12 seq3370 89.7 1e-12 seq89923 86.0 1e-11 seq52696 86.0 1e-11 seq8517 86.0 1e-11 seq2548 86.0 1e-11 >seq238054 Length=789 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 647 ATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 706 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 707 AGCCCCACGTTGGGC 721 >seq192246 Length=1030 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 879 ATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 938 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 939 AGCCCCACGTTGGGC 953 >seq138847 Length=925 Score = 95.1 bits (104), Expect = 2e-14 Identities = 72/84 (86%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 142493 GTGGTGAGATA-GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTC 142551 |||| |||| | |||||| |||||||||||||||||| ||||||||||||| |||| Sbjct 767 GTGGCGAGACAAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTC 826 Query 142552 GTGGGTTCGAGCCCCACATCGGGC 142575 ||||||||||||||||| | |||| Sbjct 827 GTGGGTTCGAGCCCCACGTTGGGC 850 >seq253432 Length=930 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || ||||||| |||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 151 GACAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 92 Query 142560 GAGCCCCACATCGGGC 142575 ||||||||| | |||| Sbjct 91 GAGCCCCACGTTGGGC 76 >seq41456 Length=1434 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 149 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 90 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 89 GCCCCACGTTGGGC 76 >seq140745 Length=1021 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 150 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 91 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 90 CCCCACGTTGGGC 78 >seq113143 Length=821 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 152 ATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 93 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 92 AGCCCCACGTTGGGC 78 >seq444848 Length=522 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 148 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 89 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 88 CCCACGTTGGGC 77 >seq238055 Length=523 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 375 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 434 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 435 CCCACGTTGGGC 446 >seq3370 Length=3486 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 149 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 90 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 89 CCCACGTTGGGC 78 >seq89923 Length=1497 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 1 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 60 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 61 TCCCGGCAGAGA 72 >seq52696 Length=3658 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 2486 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 2545 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 2546 TCCCGGCAGAGA 2557 >seq8517 Length=384 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGT-CGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| ||||||||| ||||||||||||| |||||||||||||| Sbjct 152 AGCCCGGCTAGCTCAGTTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 211 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 212 GCCCCACGTTGGGC 225 >seq2548 Length=522 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGT-CGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| ||||||||| ||||||||||||| |||||||||||||| Sbjct 84 AGCCCGGCTAGCTCAGTTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 143 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 144 GCCCCACGTTGGGC 157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1020916380607182