Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq6427 154 3e-32 seq152719 149 1e-30 seq152718 149 1e-30 seq59938 141 2e-28 seq59939 127 4e-24 seq524514 91.5 3e-13 seq219309 91.5 3e-13 seq232995 84.2 4e-11 >seq6427 Length=3314 Score = 154 bits (170), Expect = 3e-32 Identities = 150/189 (79%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || |||||||| || |||||||| || |||||||| || | |||||||| | Sbjct 3127 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCA 3186 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| ||||| || || || || || || || || ||||||||||||||||| || | Sbjct 3187 GCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGA 3246 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTT 68432 |||| |||||||| ||||||||||| ||| | || || |||| ||||||||| || Sbjct 3247 TCTTGGCCTTGACATTTTCGATGGTGTC-GCTGGGCTCAACCTCCAGGGTGATGGTCTTG 3305 Query 68433 CCCGTGAGG 68441 ||||||||| Sbjct 3306 CCCGTGAGG 3314 >seq152719 Length=2073 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || ||||| |||| || | ||||||||| |||||||| || |||||| Sbjct 272 CCTCCTCTCAGCCGCAAGACCAGATGAATGCAGGACTCTTTCTGGATGTTGTAGTCGGAG 331 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| ||||| || ||||| || || ||||| || || Sbjct 332 AGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGG 391 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| || || ||||| || ||||| ||| |||||||| | ||| || Sbjct 392 ATGCCTTCCTTATCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCGTTGGGTTCAACC 451 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| ||||| || || || ||||||||||| || || ||||| || Sbjct 452 ACCAGAGTGATAGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGAAT 498 Score = 147 bits (162), Expect = 4e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | ||||| | || | || || ||||||||||| |||||||| || |||||| Sbjct 44 CCTCCTCTCAGGCGGAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 103 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| ||||| || || || || || || || || || Sbjct 104 AGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGG 163 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| ||||| || || ||||| || ||||| ||| |||||||| ||| | ||| || Sbjct 164 ATGCCCTCCTTATCCTGGATCTTAGCTTTGACATTCTCAATGGTGTC-GCTGGGTTCAAC 222 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||| || || || |||||||| || || |||||||| Sbjct 223 CTCCAGAGTGATGGACTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 270 Score = 134 bits (148), Expect = 3e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 ||||| ||||| |||||||||||||| || | || | |||||||| | |||||| ||| Sbjct 530 GTGGATTCTTTCTGGATGTTATAATCTGACATGGTGCGACCATCTTCCAGCTGCTTGCCG 589 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 || || || || || || || || || || ||||| ||||| || || ||||| || || Sbjct 590 GCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTATCCTGGATCTTAGCTTTT 649 Query 68385 ACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGT 68443 || ||| |||||||| ||| | ||| || |||| ||||| || || || || ||||| Sbjct 650 ACATTCTCAATGGTGTC-GCTGGGTTCAACCTCCAGAGTGATAGTCTTACCAGTCAGGGT 708 Query 68444 CTTGACGAATATCTGCAT 68461 ||| || || |||||||| Sbjct 709 CTTCACAAAGATCTGCAT 726 >seq152718 Length=3078 Score = 149 bits (164), Expect = 1e-30 Identities = 166/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || ||||| || | || || ||||||||||| |||||| | || |||||||| || | Sbjct 2156 AGCCGCAAGACAAGATGGAGGGTGGACTCTTTCTGGATGCTGTAGTCGGAGAGAGTGCGA 2215 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| ||||| || || || || | || || | || ||||||||| Sbjct 2216 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTGTACTGTTCAGAAGGGATGCCTTCC 2275 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 || || |||||||| | ||||| ||| |||||||| ||| | ||| || |||| || Sbjct 2276 TTATCCTGAATCTTAACTTTGACATTCTCAATGGTGTC-GCTGGGTTCAACCTCCAGAGT 2334 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || || |||||||| || || |||||||| Sbjct 2335 GATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 2373 Score = 113 bits (124), Expect = 8e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || ||||| |||| || || || |||||||| |||||| | || |||||| Sbjct 2375 CCTCCTCTCAGCCGCAAGACCAGATGGAGGGTAGACTCTTTCTGGATGCTGTATTCGGAG 2434 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | | ||||| | | |||| ||| | || |||| || || ||||| | || Sbjct 2435 AGAGTGCGGCTGTCTTCCAGCAGCTTGCCGCCAAAGTTGAGCCTCTGCTGGTCTGTAGGG 2494 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 | |||||||| ||||| ||||| || |||| || |||||||| | ||| || Sbjct 2495 AATCCTTCCTTATCTTGGATCTTGGCTTTGAAATTATCAATGGTGTCACTGGGTTCAACC 2554 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| | || || || || ||||||||||| || || ||||| || Sbjct 2555 TCCAGAGCTATAGTCTTCCCTGTGAGGGTCTTCACAAAGATCTGAAT 2601 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 68262 AGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTC 68321 || ||||| || |||| | |||| || |||||| | |||| ||||| || | ||| || Sbjct 1946 AGGGTGGATTCCTTTTTGCTGTTGTAGTCGGAGGGAGTCCGGCCATCATCCAGCTGTTTG 2005 Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || |||| || || || || || || || | ||||||| ||| || |||||||| Sbjct 2006 CCCTCGAAGATCAGGCTCTGCTGCTCTGGATGGATGCCTTTCTTATCCTGAATCTTGTAT 2065 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||| |||||||||||| || || | || | ||| |||| || | | ||| Sbjct 2066 TTGACATTCTCGATGGTGTCACTGGACTCAATCTCAAGAGTGGTGGTCTTAGCAATCAGG 2125 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||| || || ||||| || Sbjct 2126 GTCTTCACAAAGATCTGGAT 2145 >seq59938 Length=2926 Score = 141 bits (156), Expect = 2e-28 Identities = 148/191 (77%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 68262 AGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTC 68321 || |||||||| || |||||||| || ||||| || | |||||||| | ||||| Sbjct 2739 AGGGTGGACTCCTTCTGGATGTTGTATA--GAGAGGGTGCGGCCATCTTCCGAATGCTTG 2796 Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||| || || || || || || || || ||||||||||||||||| || ||||| ||| Sbjct 2797 CCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCC 2856 Query 68382 TTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 ||||| || |||||||| ||| | || || |||| ||||||||| || || ||||| Sbjct 2857 TTGACATTTTCAATGGTGTC-GCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAG 2915 Query 68441 GGTCTTGACGA 68451 ||||||||||| Sbjct 2916 GGTCTTGACGA 2926 >seq59939 Length=800 Score = 127 bits (140), Expect = 4e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| ||||| || || || || || || || || |||||||||||| Sbjct 8 CCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 67 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| |||||||| ||||| ||||| | || || || | |||| Sbjct 68 TTGTCCTGGATCTTGGCCTTGACATTTTCGATTGTGTCACTAGGCTCAACCTCGAGGGTG 127 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || |||||||||||||| || || |||||||| Sbjct 128 ATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 165 >seq524514 Length=249 Score = 91.5 bits (100), Expect = 3e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 268534 CTTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTT 268593 |||||||||||||||| |||| ||| |||| || || || || ||||| ||||| || Sbjct 7 CTTTTGAGGGATTTCTTTCACTTCACCATAGAGTTCAGAAGTAGAAGCTTGATAGAATTT 66 Query 268594 TGTTGTTTTTTCGAGACCGCAGATTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCC 268653 ||| | ||||| | ||| | | || || || || | ||||| | || ||||| | Sbjct 67 AGTTTTCTTTTCTAAACCTAAAAAACGTATAGCTTCTAATAAACGTAATGTGCCCATTGC 126 Query 268654 ATCCACGTCCGCTGTATACTCCGGCATCTCGAATGACACCTGGACATGGCTCTGGGCGCC 268713 ||| ||||| || || || || || ||| || || || ||||| ||| || || Sbjct 127 ATCTACGTCTGCGGTGTATTCTGGACACTCAAACGAAACGGCAACATGCGACTGAGCACC 186 Query 268714 CAGGTTATAAACCTCATCCGGTT 268736 || ||||| || ||||| |||| Sbjct 187 CAAATTATATACTTCATCAGGTT 209 >seq219309 Length=251 Score = 91.5 bits (100), Expect = 3e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 268403 GGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAG 268462 ||||||||||||||||| ||||| |||||| ||||||||||| || ||||| ||| || Sbjct 228 GGGCTCTCGTGGTTGAACAGGATCCCGTTGACGGCGAACATGCCGTAGGCCTCTCGGAAG 169 Query 268463 TTCACGACCGTCCAGTATGCAAACATCTTTGCA 268495 ||||| || ||||||| ||| | | ||| ||| Sbjct 168 TTCACCACGATCCAGTAAGCATAAAGCTTCGCA 136 >seq232995 Length=1990 Score = 84.2 bits (92), Expect = 4e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||||||| | |||||||||| || || ||| |||||||||| ||| ||||| Sbjct 1640 CATGACGCCCATCCTCTGGTACTCGCCCACACGCTTCTCAAAGAAGTTGGTCTTTCCCTC 1699 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 || || ||| |||||||||||| ||||||||||| Sbjct 1700 CAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTCTC 1735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915568469819440