Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq44246 556 2e-153 seq54337 127 4e-24 seq231358 123 5e-23 seq103378 118 2e-21 seq178408 98.7 2e-15 seq232995 93.3 8e-14 seq28532 93.3 8e-14 >seq44246 Length=4029 Score = 556 bits (616), Expect = 2e-153 Identities = 1059/1534 (69%), Gaps = 53/1534 (3%) Strand=Plus/Minus Query 244074 CCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGA 244133 ||| || ||| || ||| || | ||| |||||||| ||||| || ||||| ||||| Sbjct 1779 CCTTGAGCAGATGGGGGTTGACGATCTGGAACTCTCCTGACAGGACCCGGCGGGTGTAGA 1720 Query 244134 GGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAG 244193 ||||||| || | ||||||| ||| |||||||||| ||||| || ||| || | Sbjct 1719 TGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCG 1660 Query 244194 TCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGA 244253 | ||||| || | || |||||| |||||||||||||||||| | ||| | | Sbjct 1659 TGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCA 1600 Query 244254 GCTCGTTCCAGTCCCACATGCCCGAGAG-GTCCTCGCGTTTGAGGCCCCACATGTCAAAC 244312 || ||||||||||||| | | | | | ||| || | ||||||||| || Sbjct 1599 GCAGCTTCCAGTCCCACAGGTCGGTGGGCGTCTTCTC----------CCACATGTCGTAC 1550 Query 244313 TGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTG- 244371 || || | ||||||||||||||| ||| ||||| || |||||| || || | | Sbjct 1549 TGGAGGATGCCCTTGCTGACGGGGGAGCC-TCGTACGTGTCGTAGGGGCCCA-GCTCGGC 1492 Query 244372 GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTT 244431 |||||| | ||||| | || ||||||||||||||||||||||| |||||| |||| Sbjct 1491 GGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTT 1432 Query 244432 CATGTCGC-GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCA 244490 || | || |||||| | || |||||| | ||||| |||||| ||||||||| Sbjct 1431 CA-GCAGCTGGGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCA 1373 Query 244491 GTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCA 244550 | ||||| |||||||| ||||| || ||||| ||||||||||| | ||| ||||||| Sbjct 1372 GGCCCTGGACGCCGATACCGATCGGCCTGTGGCGCTTGTTGGACTGATCGGCCTCGGGCA 1313 Query 244551 CGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA-TGCGGACGACG 244609 | ||||| ||||| || || | |||||| ||||| ||||| | || | | Sbjct 1312 CCGGGTAGAAGTTAATCTCTATGATCTTGTTCAGGTTCTTCACGATCACTTTGGTCACAG 1253 Query 244610 TCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAAC 244669 | |||| || ||||| | || | ||||| | || || || Sbjct 1252 ACT-CCAGTTTCTTGAAGTCAAAA--GTCCG----CTCGGGGGTG---------ACGTAC 1209 Query 244670 TCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGG 244729 |||||| |||| | |||||| || || || || ||||| || ||| ||| | Sbjct 1208 ATGTTGAGAGCGATGGAGGCCAGATTACACACAGCGACCTCATCGCCACTGGAGTATTCA 1149 Query 244730 ACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTG 244789 || || || ||||||||||| |||||||||||||| ||||||| ||| || ||| ||| Sbjct 1148 ACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTC 1089 Query 244790 GCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGG 244849 |||||||||||| ||||| |||||| | ||| || | ||| ||||| ||| | Sbjct 1088 CTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCCGACTCCGTCTGGGACTCGATG 1029 Query 244850 ACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAG-CCTTGCCCTCTGCCTCGTA 244908 | | || ||| | | | |||||| ||| | || | || |||||| ||| || Sbjct 1028 ATGGCGTGCCACACCTGCTGAGCCTTCACCACAC-GCTTGACCCGGCCCTCCCGCTCATA 970 Query 244909 GCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGC 244968 ||||||| || ||| ||||| |||||| |||||| || ||||||| | ||| Sbjct 969 TTGGGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCTCT-CGC 911 Query 244969 CGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGA 245027 ||| ||||| ||| ||| || | | || ||||||| |||||| |||||||||| Sbjct 910 TGGGACACATCAGAGACCAGTCCTGGTTGCTCTCCACCCTCTTCATGAACAGGTCGGGGA 851 Query 245028 TCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCA 245087 |||| | | | | |||||| || |||| |||||||| ||| || ||||||||| ||| Sbjct 850 TCCACAAGCCGTAGAAGAGATCTCTGGCTCTCTGCTCCTCCTTCCCCGTGTTCTTCTTCA 791 Query 245088 GCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGG 245147 |||||| ||||| || ||||| | |||||| ||||||| ||| | |||| |||||||| Sbjct 790 GCTCCAGGAAGTCGAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGG 731 Query 245148 GCCGCTTGTTGCCTCCCTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTA 245206 | ||||||||||| |||||||| || | | | | | |||| ||| | ||| | Sbjct 730 GTCGCTTGTTGCCGCCCTGGTCGACATAGCGTGCTGTG-TTGTTGTAGACCCTCAGCATG 672 Query 245207 GGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGG 245266 || || | ||||| |||| |||||||||||| ||||||| || || | || | Sbjct 671 GGGACCAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTGGATCGGATG 612 Query 245267 TTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATG 245326 ||||| || || || | ||| || || |||||||||||| || || ||| | Sbjct 611 CAGCTGACGGCCACACCGATTCCTCCTGCCGACTTGGAGATGAGTGCACACTGCTTCAGC 552 Query 245327 GTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGC 245386 ||||| |||||||| |||||||| ||||||| ||||||| |||||| ||| ||| Sbjct 551 GTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGAGAGC 492 Query 245387 TGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCT- 245445 || ||| | | | | | |||||| || |||||| ||||||||| || | | || Sbjct 491 TGAGGCCGGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCA-CTTCTC 433 Query 245446 CGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGT-TGTCGCCGTGGA-TCTGCAGG 245503 |||||| | ||| |||| || |||||||| | ||| ||||| || | | Sbjct 432 CGAGAGCAGGTTGTAGGTCTCGATGGCGGCGTCGATATCCGTC-TTGTGGATTCCGACCG 374 Query 245504 GCGCACCTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCT----CGGGTCCCTTGAG 245559 | | ||||||||| ||||||| ||| || | | | || || ||| || Sbjct 373 ACAC-CCTCATGAGCATGTGCTGCGGC----CGCTCCGCCACTTTGCCGTTGATCTTCAG 319 Query 245560 CATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593 || |||||| ||||| ||||||||||| || ||| Sbjct 318 CAGGTAGGATCGCTCCAGCGTCTTGAAGCCGAAG 285 >seq54337 Length=1748 Score = 127 bits (140), Expect = 4e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 |||||||||||||| || ||||| | ||| ||||| ||||||| || |||||| ||| Sbjct 1371 ACCTGAAACTCTCCAGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGGCTCAATG 1312 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||||||||| ||||| || ||| || || |||||||| | || ||||||| Sbjct 1311 GACTCATTGTTGCCCAGGATCTGGGCAGTGGAAGCTGTGGGCATGGGGGCCAACAGCAGA 1252 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 |||||||| ||||||||||| Sbjct 1251 CTGTTCCTTACGCCGTGCCT 1232 Score = 95.1 bits (104), Expect = 2e-14 Identities = 155/217 (71%), Gaps = 10/217 (5%) Strand=Plus/Minus Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTA 244381 ||||||||||| || ||| ||||||| || | ||| || || |||| | Sbjct 940 CCCTTGCTGACAGGAGAGCCGGCGTAGGTTTCATAAGCGCCGAACTCCTCTGCGAGCTCA 881 Query 244382 CAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC-G 244440 ||||| | || ||||| |||||||||||||||||||||||| |||| | || || | Sbjct 880 CAGCTGGCCTCCAGGGCAGCGTAGTAGATGGTCTCGAAGATCTGAATGTTGA-GTAGCTG 822 Query 244441 GGCCTTGCCGCAGG---TGAAGGGGAT-GCCCATCATCATGAAGACGTCGGCCAGTCCCT 244496 ||||| ||| || | || |||| | ||| | |||||| | || ||||| |||| Sbjct 821 GGCCT--CCG--GGCTTTCAAACGGATAACGCATAAGGATGAAGGCATCAGCCAGACCCT 766 Query 244497 GCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA 244533 |||| ||||| || || || ||||| ||| ||||||| Sbjct 765 GCACACCGATTCCAATCGGCCTGTGACGCCTGTTGGA 729 >seq231358 Length=2322 Score = 123 bits (136), Expect = 5e-23 Identities = 105/127 (83%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| ||||| ||||||| ||||| ||||||||||| || ||||||| ||||||||| Sbjct 753 TGGTGGCCTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGGTCCTTCGCTGCCATCTTCT 694 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| | ||||||||| || |||||||| || || ||||||||||| Sbjct 693 GGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAATGAGCTCATCAGCAGA 635 Query 42825 GACGAGG 42831 ||||||| Sbjct 634 GACGAGG 628 Score = 89.7 bits (98), Expect = 1e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 |||||| | ||||||||| ||||| ||||||||||| ||||||||||| ||||| Sbjct 1139 TTCATGCAGGAGGTGCAGGTGACGGAGGCCCGCTGCTTCTATGGCTTCCAGATCGCCATG 1080 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCC 42593 |||||| | ||||| ||| ||||| | || || ||||||||||| ||| ||| Sbjct 1079 GAGAACATCCACTCGGAGATGTACAGCCTCCTCATCGACACGTACATCAGGGAGCCC 1023 >seq103378 Length=1867 Score = 118 bits (130), Expect = 2e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 |||||||||||| |||||||| ||||| ||| ||||| |||| ||||||||| || Sbjct 1324 CATGAAGAGGTCTGGGATCCACAGGGCGAAGAACAGGTCTCTGGCCCTCTGCTCCTCTTT 1265 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 || ||||||||| ||| ||| || || ||||| ||||| | ||||| ||||||| ||| Sbjct 1264 ACCTGTGTTCTTCTTCATCTCTAAGAACTCAAACACGTCCAAATGCCACGGCTCCAGGTA 1205 Query 245131 GACAGCGAGGGCGCCGGG 245148 || |||| ||| ||||| Sbjct 1204 CACGGCGAAGGCCCCGGG 1187 Score = 100 bits (110), Expect = 5e-16 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| || | ||||||||| || ||||| ||||| || || ||| | |||||||| Sbjct 1801 CACCTCATCTTTGCTGGTGTACTCCACTATCTCTGTGCACAGATTGCTGGATTTGATGGT 1742 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGC 244822 ||||| | ||| || ||| ||| |||||||||||||||||||||||||| | ||| Sbjct 1741 TCCCAGATTCTGCTGGTTGCTCTTCCCGTTGCAGGCGTCCTTGTAGAGCATGTACGGC 1684 >seq178408 Length=3085 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 242955 GACAGGACCACTCCGATCGGACAGATGATCAACTCGTACCTGCTCAACAAGAGCGATCTG 243014 ||||||| ||| ||||||||||| |||||| | | ||||||| || |||||||| ||| Sbjct 503 GACAGGAGCACCACGATCGGACAGCTGATCAGCGCCTACCTGCAGAAGAAGAGCGACCTG 444 Query 243015 GACGATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGA 243058 || || ||| || ||||| |||||||| |||||||| ||||| Sbjct 443 GAGGACCACACGGTTCACCTGCTGTTCTCTGCCAACCGCTGGGA 400 >seq232995 Length=1990 Score = 93.3 bits (102), Expect = 8e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 1730 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 1671 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 1670 TGTGGGCGAGTACCAG 1655 >seq28532 Length=8763 Score = 93.3 bits (102), Expect = 8e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || || ||| | ||||| ||||| ||||||||||| || | ||||| ||||||| ||| Sbjct 1822 GTGGCTTTTGCTGCCGTGGAGGGAATCTTCTTCTCCGGTTCGTTCGCTGCCATCTTTTGG 1881 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 || ||| ||| | | |||||||| || |||||||| || || || || |||||||| Sbjct 1882 CTGAAGAAGAGAGGCTTAATGCCCGGGCTTACCTTCTCCAATGAGCTGATTAGCAGGGAT 1941 Query 42828 GAGG 42831 |||| Sbjct 1942 GAGG 1945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 938136048271520