Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq152719 93.3 3e-14 seq459 89.7 4e-13 >seq152719 Length=2073 Score = 93.3 bits (102), Expect = 3e-14 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||||||| || ||||| ||||| || ||| ||| ||||| |||||||| || | Sbjct 43 ACCTCCTCTCAGGCGGAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGA 102 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || || |||| |||| |||||||||||||| ||||| | ||||||||| Sbjct 103 GAGAGTG-CGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATC 156 Score = 87.8 bits (96), Expect = 1e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||||||||||| |||||||| ||||| | ||| || ||||| ||||| ||||||| Sbjct 499 ACCTCCTCTCAAGCGCAGCACAAGATGGATGGTGGATTCTTTCTGGATGTTATAATCTGA 558 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || || || | || |||| |||||||||||||| ||||| | ||||||||| Sbjct 559 C-ATGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATC 612 >seq459 Length=1892 Score = 89.7 bits (98), Expect = 4e-13 Identities = 75/88 (85%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 115528 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGG 115584 || |||||||| ||||| ||||| |||| |||||||||||||| |||| |||| |||| Sbjct 258 TGGCATGTATTAGCTCTGGAATTGCCACAGTTATCCAAGTAACGTGAGAGCGATCAAAGG 199 Query 115585 AACCAAAACTGATATATTGAGCCATTCG 115612 ||||| ||||||| || ||||||||||| Sbjct 198 AACCATAACTGATTTAATGAGCCATTCG 171 Score = 89.7 bits (98), Expect = 4e-13 Identities = 75/88 (85%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 114331 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGG 114387 || |||||||| ||||| ||||| |||| |||||||||||||| |||| |||| |||| Sbjct 258 TGGCATGTATTAGCTCTGGAATTGCCACAGTTATCCAAGTAACGTGAGAGCGATCAAAGG 199 Query 114388 AACCAAAACTGATATATTGAGCCATTCG 114415 ||||| ||||||| || ||||||||||| Sbjct 198 AACCATAACTGATTTAATGAGCCATTCG 171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394519391772604