Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_009760.1 Length=218948 Score E Sequences producing significant alignments: (Bits) Value seq455325 107 3e-18 seq292596 96.9 5e-15 seq297103 93.3 6e-14 seq224785 84.2 3e-11 >seq455325 Length=446 Score = 107 bits (118), Expect = 3e-18 Identities = 124/164 (76%), Gaps = 5/164 (3%) Strand=Plus/Plus Query 157430 TGCGCACGAGTGATACCTACATACGCTAGGCGACGTTCTTCTTCTAATTGAACTGTATCA 157489 || || || || ||||| |||||||||| || || || ||||||| | | || |||| Sbjct 7 TGTGCTCGCGTAATACCGACATACGCTAAACGTCGCTCCTCTTCTACATTATCTTCATCA 66 Query 157490 GATAGACT-ACGTGAATGCGGGAATAATCCCTCTTCCATACCAATCATAAATACGACTGG 157548 | ||| || ||| || || ||||| || |||||||||||||||||| ||||| || Sbjct 67 ---ATACTGACCTGA-TGTGGTAATAAACCTTCTTCCATACCAATCATATATACGTAAGG 122 Query 157549 ATACTCAAGTCCTTTCGAAGTATGAAGCGTCATTAATTGTACTT 157592 | |||| ||||||||||| | ||| | ||||| || ||||||| Sbjct 123 AAACTCTAGTCCTTTCGATGCATGTAAGGTCATCAACTGTACTT 166 >seq292596 Length=2337 Score = 96.9 bits (106), Expect = 5e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 164093 TTTCAACTCTTTACCAGCTTTGAATGCCGGTACTTTTGTTGCAGCAATTTCAATTTCTTC 164152 ||| | | |||| ||||||||||| || || | || | |||||||||| |||||||| Sbjct 1866 TTTTAGCGCTTTGCCAGCTTTGAACGCTGGAATGTTCGCAGCAGCAATTTTAATTTCTTT 1925 Query 164153 ACCAGTTTGTGGGTTACGTCCCTTACGAGCCGCACGGTCACGAGTTTCGAATGTACCAAA 164212 ||| |||||||||||||| || |||| | ||||| | ||| ||| ||||||||||| Sbjct 1926 ACCCGTTTGTGGGTTACGGCCAGTACGTTCAGCACGTTGACGTACTTCAAATGTACCAAA 1985 Query 164213 GCC 164215 || Sbjct 1986 ACC 1988 >seq297103 Length=2678 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 164077 ATTATTTTACTGCTGTTTTCAACTCTTTACCAGCTTTGAATGCCGGTACTTTTGTTGCAG 164136 |||| |||||||| ||| | ||||||| ||||| ||||| || | ||| |||| Sbjct 259 ATTAGTTTACTGCGTCTTTTAGTGCTTTACCTGCTTTAAATGCAGGGATAGTTGCAGCAG 318 Query 164137 CAATTTCAATTTCTTCACCAGTTTGTGGGTTACGTCCCTTACGAGCCGCACGGTCACGAG 164196 |||||| |||| ||| ||||||||||| ||||| || ||| || |||||||||||| Sbjct 319 CAATTTGAATTGTTTCGCCAGTTTGTGGATTACGGCCTGAACGTGCAGCACGGTCACGAA 378 Query 164197 TTTCGAATGTACCAAAGCC 164215 | || |||||||| || Sbjct 379 CTGAAAAAGTACCAAAACC 397 >seq224785 Length=2837 Score = 84.2 bits (92), Expect = 3e-11 Identities = 109/144 (76%), Gaps = 5/144 (3%) Strand=Plus/Plus Query 157430 TGCGCACGAGTGATACCTACATACGCTAGGCGACGTTCTTCTTCTAA-TTGAACTGTATC 157488 || || || ||||| || |||||||| |||||||| ||||| |||| ||| || ||| Sbjct 2276 TGAGCTCGGGTGATCCCAACATACGCAAGGCGACGCTCTTCATCTACGTTGTCCTC-ATC 2334 Query 157489 AGATAGACTACGTGAATGCGGGAATAATCCCTCTTCCATACCAATCATAAATACGACTGG 157548 | ||| ||| ||| ||||| | || |||||||||||||| | |||||| ||| || Sbjct 2335 A-ATACT-TACCTGA-TGCGGTAGCAAGCCCTCTTCCATACCCACCATAAACACGTACGG 2391 Query 157549 ATACTCAAGTCCTTTCGAAGTATG 157572 |||||| ||||| || || | ||| Sbjct 2392 ATACTCTAGTCCCTTTGATGCATG 2415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 695904136327360