Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_009760.1
Length=218948
Score E
Sequences producing significant alignments: (Bits) Value
seq455325 107 3e-18
seq292596 96.9 5e-15
seq297103 93.3 6e-14
seq224785 84.2 3e-11
>seq455325
Length=446
Score = 107 bits (118), Expect = 3e-18
Identities = 124/164 (76%), Gaps = 5/164 (3%)
Strand=Plus/Plus
Query 157430 TGCGCACGAGTGATACCTACATACGCTAGGCGACGTTCTTCTTCTAATTGAACTGTATCA 157489
|| || || || ||||| |||||||||| || || || ||||||| | | || ||||
Sbjct 7 TGTGCTCGCGTAATACCGACATACGCTAAACGTCGCTCCTCTTCTACATTATCTTCATCA 66
Query 157490 GATAGACT-ACGTGAATGCGGGAATAATCCCTCTTCCATACCAATCATAAATACGACTGG 157548
| ||| || ||| || || ||||| || |||||||||||||||||| ||||| ||
Sbjct 67 ---ATACTGACCTGA-TGTGGTAATAAACCTTCTTCCATACCAATCATATATACGTAAGG 122
Query 157549 ATACTCAAGTCCTTTCGAAGTATGAAGCGTCATTAATTGTACTT 157592
| |||| ||||||||||| | ||| | ||||| || |||||||
Sbjct 123 AAACTCTAGTCCTTTCGATGCATGTAAGGTCATCAACTGTACTT 166
>seq292596
Length=2337
Score = 96.9 bits (106), Expect = 5e-15
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 164093 TTTCAACTCTTTACCAGCTTTGAATGCCGGTACTTTTGTTGCAGCAATTTCAATTTCTTC 164152
||| | | |||| ||||||||||| || || | || | |||||||||| ||||||||
Sbjct 1866 TTTTAGCGCTTTGCCAGCTTTGAACGCTGGAATGTTCGCAGCAGCAATTTTAATTTCTTT 1925
Query 164153 ACCAGTTTGTGGGTTACGTCCCTTACGAGCCGCACGGTCACGAGTTTCGAATGTACCAAA 164212
||| |||||||||||||| || |||| | ||||| | ||| ||| |||||||||||
Sbjct 1926 ACCCGTTTGTGGGTTACGGCCAGTACGTTCAGCACGTTGACGTACTTCAAATGTACCAAA 1985
Query 164213 GCC 164215
||
Sbjct 1986 ACC 1988
>seq297103
Length=2678
Score = 93.3 bits (102), Expect = 6e-14
Identities = 104/139 (75%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 164077 ATTATTTTACTGCTGTTTTCAACTCTTTACCAGCTTTGAATGCCGGTACTTTTGTTGCAG 164136
|||| |||||||| ||| | ||||||| ||||| ||||| || | ||| ||||
Sbjct 259 ATTAGTTTACTGCGTCTTTTAGTGCTTTACCTGCTTTAAATGCAGGGATAGTTGCAGCAG 318
Query 164137 CAATTTCAATTTCTTCACCAGTTTGTGGGTTACGTCCCTTACGAGCCGCACGGTCACGAG 164196
|||||| |||| ||| ||||||||||| ||||| || ||| || ||||||||||||
Sbjct 319 CAATTTGAATTGTTTCGCCAGTTTGTGGATTACGGCCTGAACGTGCAGCACGGTCACGAA 378
Query 164197 TTTCGAATGTACCAAAGCC 164215
| || |||||||| ||
Sbjct 379 CTGAAAAAGTACCAAAACC 397
>seq224785
Length=2837
Score = 84.2 bits (92), Expect = 3e-11
Identities = 109/144 (76%), Gaps = 5/144 (3%)
Strand=Plus/Plus
Query 157430 TGCGCACGAGTGATACCTACATACGCTAGGCGACGTTCTTCTTCTAA-TTGAACTGTATC 157488
|| || || ||||| || |||||||| |||||||| ||||| |||| ||| || |||
Sbjct 2276 TGAGCTCGGGTGATCCCAACATACGCAAGGCGACGCTCTTCATCTACGTTGTCCTC-ATC 2334
Query 157489 AGATAGACTACGTGAATGCGGGAATAATCCCTCTTCCATACCAATCATAAATACGACTGG 157548
| ||| ||| ||| ||||| | || |||||||||||||| | |||||| ||| ||
Sbjct 2335 A-ATACT-TACCTGA-TGCGGTAGCAAGCCCTCTTCCATACCCACCATAAACACGTACGG 2391
Query 157549 ATACTCAAGTCCTTTCGAAGTATG 157572
|||||| ||||| || || | |||
Sbjct 2392 ATACTCTAGTCCCTTTGATGCATG 2415
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 695904136327360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |