Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_009821.1 Length=164270 Score E Sequences producing significant alignments: (Bits) Value seq449735 156 4e-33 seq509673 123 3e-23 seq351952 98.7 1e-15 seq506238 91.5 2e-13 >seq449735 Length=3187 Score = 156 bits (172), Expect = 4e-33 Identities = 319/467 (68%), Gaps = 8/467 (2%) Strand=Plus/Minus Query 135748 GGACTAAACAGAGTAATGTAATCCCGTTTAAGGAATCGCTCTACCATCAGGTTATTAATC 135807 || ||||||| |||||||| || ||||| || ||| ||| || ||||||| | Sbjct 488 GGGCTAAACAAGGTAATGTAGTCGTCTTTAATTAAACGCGAGTACATTAGTTTATTAAAC 429 Query 135808 TGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACCCCCTTATTGTTCTTTAAC 135867 ||||||||||| || | ||| || | |||||| || || ||||| || || || | Sbjct 428 TGTACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAGT 369 Query 135868 ACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGTCGCCGCCCCGCCA 135927 || | ||| |||| | ||||||||||| | ||||| | | || || || |||||| Sbjct 368 ACTAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAGGTTGCTGCGCCGCCA 309 Query 135928 CGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTTCCAGAATGGGATA 135987 || | ||||||||| || || ||||| || || ||||| || || | || || ||| Sbjct 308 CGTACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAATA 249 Query 135988 ACGCCAGTATG--ACGAACTTCACCATGCCCGATCTTAGATCCTTCCGCGCGAATCATGC 136045 || ||||| ||| |||| |||| | || | || || ||||| | Sbjct 248 CAACCCGTATGGTACG--CTTCGCCATTGCGAATGTGGCTACCCAGTGCACGAATGCGAC 191 Query 136046 CAGCGTTGATACCGATACCAGCACGCTTGCTA-ATATACTTGATGATTGCATTTGCTGTT 136104 | ||||| || || || || ||||| |||| | | || || | |||||| | || Sbjct 190 CTGCGTTAATGCCAATGCCGGCACG-TTGCGATACGTATTTAACAATTGCAGACGAGGTG 132 Query 136105 TCGTTGATGCCCTGCAATG-AGTCATCACTTTCAATCACCACACACGAACTAAATTGGCG 136163 |||| || | ||| | ||| ||| || || | |||||||| ||||| ||||| Sbjct 131 GCGTTAATTGAAT-CAAGGCTGTCGCCACACTCTATTAATACACACGAGCTAAACTGGCG 73 Query 136164 TGTTGGGGTACGCACACCTGCCATAATCGGAGTAGGCAGAGAGATTT 136210 |||||| ||||| |||||||||||||| || ||||| || || |||| Sbjct 72 TGTTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAGTGAAATTT 26 >seq509673 Length=441 Score = 123 bits (136), Expect = 3e-23 Identities = 152/204 (75%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 135799 TTATTAATCTGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACCCCC---TTA 135855 ||||| | |||||||||||| || | ||| || | ||||| |||||||| || ||| Sbjct 219 TTATTTAACTGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTA 278 Query 135856 TTGTTCTTTAACAC-AATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGT 135914 || ||| || || ||| |||| ||| ||||||||||| | ||||||| | | || Sbjct 279 TTTTTCAGTACCAATAAT--GACT--CAACTTCTAAATGCCATAATGGGTAAAACAACGT 334 Query 135915 CGCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTT 135974 ||| || |||||||| | |||||||||||||| | ||||| ||||| || || |||| Sbjct 335 CGCTGCACCGCCACGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTT 394 Query 135975 CCAGAATGGGATAACGCCAGTATG 135998 ||||||||||| || ||||| Sbjct 395 ATAGAATGGGATACAACCCGTATG 418 >seq351952 Length=416 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 53331 GTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTA-TTGAAGCGCAC 53389 ||||||||||| | ||| || || ||| || |||| ||| | || | || || || || Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTA-ACGAGTTAAATCGTAC 92 Query 53390 CGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGCGTC 53449 |||||||| || || |||||||| | || || ||||| || |||| ||| | || || Sbjct 93 TGCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATC 152 Query 53450 CAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGACCACCTTC 53500 || |||||||| || || ||| ||||| || || || ||||||||||| Sbjct 153 CAATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTC 203 >seq506238 Length=275 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 53311 TGAAAAATTAGAGAGATTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAG 53370 ||||| |||| | | ||| ||||| ||||| | | ||||| |||| || ||||| | Sbjct 32 TGAAATATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTG 91 Query 53371 TCAGACTATTGAAGCGCACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCT 53430 | | || || ||||| |||||||| || || ||||| || | || || || || | Sbjct 92 TTAATGAGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTT 151 Query 53431 CAGGATGTTCAACAGCGTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCT 53490 |||| |||| |||||| || ||| |||| || || || || || || ||||| | Sbjct 152 CAGGGTGTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTT 211 Query 53491 GACCACCTTC 53500 |||||||||| Sbjct 212 GACCACCTTC 221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 522083872261600