Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_009821.1
Length=164270
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 156 4e-33
seq509673 123 3e-23
seq351952 98.7 1e-15
seq506238 91.5 2e-13
>seq449735
Length=3187
Score = 156 bits (172), Expect = 4e-33
Identities = 319/467 (68%), Gaps = 8/467 (2%)
Strand=Plus/Minus
Query 135748 GGACTAAACAGAGTAATGTAATCCCGTTTAAGGAATCGCTCTACCATCAGGTTATTAATC 135807
|| ||||||| |||||||| || ||||| || ||| ||| || ||||||| |
Sbjct 488 GGGCTAAACAAGGTAATGTAGTCGTCTTTAATTAAACGCGAGTACATTAGTTTATTAAAC 429
Query 135808 TGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACCCCCTTATTGTTCTTTAAC 135867
||||||||||| || | ||| || | |||||| || || ||||| || || || |
Sbjct 428 TGTACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAGT 369
Query 135868 ACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGTCGCCGCCCCGCCA 135927
|| | ||| |||| | ||||||||||| | ||||| | | || || || ||||||
Sbjct 368 ACTAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAGGTTGCTGCGCCGCCA 309
Query 135928 CGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTTCCAGAATGGGATA 135987
|| | ||||||||| || || ||||| || || ||||| || || | || || |||
Sbjct 308 CGTACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAATA 249
Query 135988 ACGCCAGTATG--ACGAACTTCACCATGCCCGATCTTAGATCCTTCCGCGCGAATCATGC 136045
|| ||||| ||| |||| |||| | || | || || ||||| |
Sbjct 248 CAACCCGTATGGTACG--CTTCGCCATTGCGAATGTGGCTACCCAGTGCACGAATGCGAC 191
Query 136046 CAGCGTTGATACCGATACCAGCACGCTTGCTA-ATATACTTGATGATTGCATTTGCTGTT 136104
| ||||| || || || || ||||| |||| | | || || | |||||| | ||
Sbjct 190 CTGCGTTAATGCCAATGCCGGCACG-TTGCGATACGTATTTAACAATTGCAGACGAGGTG 132
Query 136105 TCGTTGATGCCCTGCAATG-AGTCATCACTTTCAATCACCACACACGAACTAAATTGGCG 136163
|||| || | ||| | ||| ||| || || | |||||||| ||||| |||||
Sbjct 131 GCGTTAATTGAAT-CAAGGCTGTCGCCACACTCTATTAATACACACGAGCTAAACTGGCG 73
Query 136164 TGTTGGGGTACGCACACCTGCCATAATCGGAGTAGGCAGAGAGATTT 136210
|||||| ||||| |||||||||||||| || ||||| || || ||||
Sbjct 72 TGTTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAGTGAAATTT 26
>seq509673
Length=441
Score = 123 bits (136), Expect = 3e-23
Identities = 152/204 (75%), Gaps = 8/204 (4%)
Strand=Plus/Plus
Query 135799 TTATTAATCTGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACCCCC---TTA 135855
||||| | |||||||||||| || | ||| || | ||||| |||||||| || |||
Sbjct 219 TTATTTAACTGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTA 278
Query 135856 TTGTTCTTTAACAC-AATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGT 135914
|| ||| || || ||| |||| ||| ||||||||||| | ||||||| | | ||
Sbjct 279 TTTTTCAGTACCAATAAT--GACT--CAACTTCTAAATGCCATAATGGGTAAAACAACGT 334
Query 135915 CGCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTT 135974
||| || |||||||| | |||||||||||||| | ||||| ||||| || || ||||
Sbjct 335 CGCTGCACCGCCACGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTT 394
Query 135975 CCAGAATGGGATAACGCCAGTATG 135998
||||||||||| || |||||
Sbjct 395 ATAGAATGGGATACAACCCGTATG 418
>seq351952
Length=416
Score = 98.7 bits (108), Expect = 1e-15
Identities = 126/171 (74%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 53331 GTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTA-TTGAAGCGCAC 53389
||||||||||| | ||| || || ||| || |||| ||| | || | || || || ||
Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTA-ACGAGTTAAATCGTAC 92
Query 53390 CGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGCGTC 53449
|||||||| || || |||||||| | || || ||||| || |||| ||| | || ||
Sbjct 93 TGCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATC 152
Query 53450 CAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGACCACCTTC 53500
|| |||||||| || || ||| ||||| || || || |||||||||||
Sbjct 153 CAATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTC 203
>seq506238
Length=275
Score = 91.5 bits (100), Expect = 2e-13
Identities = 134/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 53311 TGAAAAATTAGAGAGATTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAG 53370
||||| |||| | | ||| ||||| ||||| | | ||||| |||| || ||||| |
Sbjct 32 TGAAATATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTG 91
Query 53371 TCAGACTATTGAAGCGCACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCT 53430
| | || || ||||| |||||||| || || ||||| || | || || || || |
Sbjct 92 TTAATGAGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTT 151
Query 53431 CAGGATGTTCAACAGCGTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCT 53490
|||| |||| |||||| || ||| |||| || || || || || || ||||| |
Sbjct 152 CAGGGTGTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTT 211
Query 53491 GACCACCTTC 53500
||||||||||
Sbjct 212 GACCACCTTC 221
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 522083872261600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |