Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq44246 206 3e-48 seq496362 100 3e-16 seq54337 95.1 1e-14 seq231358 93.3 5e-14 seq504380 89.7 6e-13 >seq44246 Length=4029 Score = 206 bits (228), Expect = 3e-48 Identities = 897/1395 (64%), Gaps = 53/1395 (4%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| |||||||||||| Sbjct 1723 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 1664 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || |||||||| || |||| || |||||||| | | || | | || ||| Sbjct 1663 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCC 1604 Query 114062 TTGAGGGCGTCCCAGTC------GTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAAC 114115 || || | |||||| || | || || | |||||| |||| || || Sbjct 1603 TTCAGCAGCTTCCAGTCCCACAGGTCGGTGGGCGTCTTCTCCC------ACATGTCGTAC 1550 Query 114116 TGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCC 114175 |||||||| || | | | | || || || || | || ||||| |||||| | | Sbjct 1549 TGGAGGATGCCCTTGCTGACGGGGGAGCC-TCGTACGTGTCGTAGGGGCCCAGCTCGGCG 1491 Query 114176 GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTC 114235 |||| |||| |||| ||||| ||||| |||| || || |||||||| || | ||| Sbjct 1490 GCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTC 1431 Query 114236 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGA 114295 | || ||||||| | ||||| | | || || || || | || || || Sbjct 1430 AGCAGCTGGGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCAGG 1371 Query 114296 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---C 114352 || ||||| |||| || || || | || | | | || |||| || ||| ||| | Sbjct 1370 CCCTGGACGCCGATACCGATCGGCCTGTGGCGCTTGTTGGACT---GATCGGCCTCGGGC 1314 Query 114353 ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT 114412 || || || || || | || || | | | || || || || || || || || | Sbjct 1313 ACCGGGTAGAAGTTAATCTCTATGATCTTGTTCAGGTTCTTCACGATCACTTTGGTCACA 1254 Query 114413 TCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCG 114472 | || || | | | |||||| | || ||| |||| ||| | || ||| Sbjct 1253 GACTCCAGTTTCTTGAAGTCAAAAGTCCG---CTCGGGGGTGACGTACATGTTGAGAGCG 1197 Query 114473 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTA 114532 || || |||||||||||||||| | |||||| | | ||| || | |||||||| Sbjct 1196 ATGGAGGCCAGATTACACACAGCGACCTCATCGCCACTGGAGTATTCAACGATTTCCGTG 1137 Query 114533 CACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 114592 || | || | ||| ||||| |||| ||||| || || ||| |||| || || Sbjct 1136 CAGAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCG 1077 Query 114593 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 114652 || ||||| |||||||| ||||| |||| |||||| ||||||| || || || | ||| Sbjct 1076 TCTTTGTACAGCATGTACGGCGTGCCCGACTCCGTCTGGGACTCGATGATGGCGTGCCAC 1017 Query 114653 ACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAG 114711 || | | | | || || || ||| | || |||||| ||| || | |||||||| Sbjct 1016 ACCTGCTGAGCCTTCACCACACGC-TTGACCCGGCCCTCCCGCTCATATTGGGTGTAGAG 958 Query 114712 GGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG-CAGAAGA 114770 |||||||| || ||| | ||| ||||| || || | ||||| || | | Sbjct 957 CTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCC-GGGGCTCTCGCTGGGACACATCA 899 Query 114771 GAGACCATTGACCACCCT--CCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGC 114828 ||||||| | || | ||| || | ||||||||| ||||| |||||||| | ||| Sbjct 898 GAGACCA--GTCCTGGTTGCTCTCCACCCTCTTCATGAACAGGTCGGGGATCCACA-AGC 842 Query 114829 TG-AGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAA 114886 | |||||||||| | | | ||| || | ||||| || || || ||||| Sbjct 841 CGTAGAAGAGATCTCTGGCTCTCTGCTCCTCCTTCCCCGTG-TTCTTCTTCAGCTCCAGG 783 Query 114887 AAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC------CTTA 114940 ||||| | | || ||||||||| |||||||||| |||| | || ||| Sbjct 782 AAGTCGAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGTCGCTT- 724 Query 114941 CGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATG 115000 | | || |||||| ||||| | |||||| || | || | ||||| || | Sbjct 723 -GTTG-CCGCCCTGGTCGACATAGCGTGCTGTGTTGTTGTAGACCCTCAGCATGGGGACC 666 Query 115001 ATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGA--CATCAT 115058 | || | || | ||| || || || || | ||| || || || | Sbjct 665 AGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTGGATCGGATGCAGC-- 608 Query 115059 GGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGC 115118 || | || ||| || || |||||| |||| ||||| | || |||| | | || || Sbjct 607 TGACGGCCACACCGATTCCTCCTGCCGACTTGGAGATGAGTGCACACTGCTTCAGCGTGT 548 Query 115119 CGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTG 115178 ||||||| || ||||| ||| |||| | | || ||||||||||| || | || | Sbjct 547 CGTAGATGCCCTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGAGAGCTGAG 488 Query 115179 GCC--TTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGG 115235 ||| ||| || || ||||||||||| || || | |||||| ||||| || | | | Sbjct 487 GCCGGTTG--GTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAAC-CACTTCTCCG 431 Query 115236 ACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGA 115295 | | | | ||||||||| | | ||||| || || | ||| || |||| ||| | Sbjct 430 AGAGCAGGTTGTAGGTCTCGATGGCGGCGTCGATATCCGTCTTGTGGATTCCGACCGACA 371 Query 115296 CCCGCATAAACATGT 115310 ||| ||| | ||||| Sbjct 370 CCCTCATGAGCATGT 356 >seq496362 Length=882 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| | ||| |||||||| || || | ||| || ||||| || ||||||||| | ||| Sbjct 619 GTGAACACCTTCGTCACGAGAAATCAATTCGTTTGAGAATGTCAATCCTGGCATCAAACC 560 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 || || |||||||||||||| | |||||| | ||| |||||||| ||||| ||||| Sbjct 559 TCGTTTTTTCAACCAGAAAATGGAACAAAAAGCACCTGAGAAGAAAATTCCTTCCACTGC 500 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGA 126207 || || |||| | ||||| || || || Sbjct 499 TGCAAAAGCAATCAATCGCTCTGCGAAAGA 470 >seq54337 Length=1748 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| ||||||| | |||||||||| |||| ||| ||||| ||||| Sbjct 1338 TAGATGTTGCTGGTGTACGGCTCAATGGACTCATTGTTGCCCAGGATCTGGGCAGTGGAA 1279 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 |||||||||||||| |||| || || ||||| Sbjct 1278 GCTGTGGGCATGGGGGCCAACAGCAGACTGTT 1247 >seq231358 Length=2322 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| ||||| |||||| ||| || ||||| || || | ||||| Sbjct 628 CCTCGTCTCTGCTGATGAGCTCATTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 687 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 ||| |||||| || ||| || || || |||||||||||||||||||| Sbjct 688 TCAGCCAGAAGATGGCAGCGAAGGACCCAGAGAAGAAGATTCCCTCCAC 736 >seq504380 Length=601 Score = 89.7 bits (98), Expect = 6e-13 Identities = 218/325 (67%), Gaps = 14/325 (4%) Strand=Plus/Plus Query 10874 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGC- 10932 ||||| |||||||| || ||| | ||| || | || || || || |||||||| | Sbjct 14 TCAAAACCATCCATTTCGACCAATAATTGGTTCAGTGTCTGCTCACGCTCATCATTACCA 73 Query 10933 --GGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 10990 | ||||||| ||| | || |||||| || ||||||||||| || || | | Sbjct 74 CCGCCCATACCAGAGCCAC---GATGACGACCGACCGCATCAATTTCATCAATAAAGATG 130 Query 10991 ATACACGGTTGA---TTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCG 11047 ||||| || |||| | || ||| || ||||| || || | ||||||| Sbjct 131 ATACAAGGCGCGCTCTTTTTA---GCCTGTTCGAACATATCGCGTACACGTGAGGCACCG 187 Query 11048 ACACCCACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGA 11106 ||||| |||||||| || ||||||| | | | | |||| || ||| || || || | Sbjct 188 ACACCGACAAACATCTCAACAAAATCAGAACCTG-AGATTGAGAAGAACGGCACTTTAGC 246 Query 11107 TTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAG 11166 |||||| || ||||||| ||| | | ||| || || || || || ||| | | | Sbjct 247 TTCACCAGCAATGGCTCTGGCTAACAAGGTTTTACCGGTACCTGGAGGACCTACCATTAA 306 Query 11167 GGCACCACGTGGGATCCTGGCACCA 11191 | ||||||||| ||| | |||||| Sbjct 307 GATACCACGTGGAATCGTCGCACCA 331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593429718606160